Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Reverse (-)

6697079 .. 6698237

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1080400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAATATATCACCATCACAATGCAATAGTGGGTGTGAATCTGGATGGACAAGTTACCTAGATGAGTCCTCCTATCTTTCTCAAAGTCAGTTCCAAAAACCTGGGGGTTTTGCTGATTATGTGGAGACAAAAGAAGAAGAAGAAGAAGATCTGTCGATGGTGTCCGATGCTTCTTCTGGACCTCCACATTACCACGAATTCGATGAAGACTGCGTGTACGAAAACAGGTCTTCCTTTTCGGTTTCGTGGGGTTCCAAGTTGGGAAAGAAGAGCAAGAAGAAAAGCAAAGGAATTGGCAGCCGAGAACAACACCTTGATGACACTGCTAGCTCCCCAGTCCTCAACTACTCCAAGAAGAAGTTAAGTGTTAATTTCCCAAAGGATGAATCTTCAATGCAGAATGTATTGGATTACTCTGAGGGTTTTTCTGCAACAAATATAAAGGGAAAATCTGTATTGCTGCAGCACTTTGGTTTCTTCAAGTCATCTCTAGCCAAAAGTCCAGCTTCACAAAAACCAGGTGATTTCCAAGGCGGCAGTTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.1

Weight (kDa)

5.29

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	393, 481
AjnI	CCWGG	2 cut(s)	100, 517
AluBI	AGCT	2 cut(s)	330, 506
AluI	AGCT	2 cut(s)	330, 506
Alw26I	GTCTC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	297, 460, 463
ApoI	RAATTY	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	3, 533
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	213, 222
BbvI	GCAGC	3 cut(s)	309, 447, 475
BccI	CCATC	3 cut(s)	22, 39, 151
BciT130I	CCWGG	2 cut(s)	102, 519
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	3 cut(s)	59, 327, 491
BfmI	CTRYAG	1 cut(s)	461
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	4 cut(s)	298, 461, 464, 535
BlsI	GCNGC	4 cut(s)	299, 462, 465, 536
Bme1390I	CCNGG	2 cut(s)	102, 519
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	102, 519
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	157
BmtI	GCTAGC	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	2 cut(s)	213, 222
BsaJI	CCNNGG	2 cut(s)	101, 529
Bse1I	ACTGG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	102, 519
BseDI	CCNNGG	2 cut(s)	101, 529
BseGI	GGATG	2 cut(s)	50, 388
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	309, 447, 475
BsmAI	GTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	534
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	465
BspOI	GCTAGC	1 cut(s)	330
BspQI	GCTCTTC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	101, 529
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	529
Bst2UI	CCWGG	2 cut(s)	102, 519
Bst6I	CTCTTC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	50, 388
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	148
BstNI	CCWGG	2 cut(s)	102, 519
BstSCI	CCNGG	2 cut(s)	100, 517
BstSFI	CTRYAG	1 cut(s)	461
BstV1I	GCAGC	3 cut(s)	309, 447, 475
BstV2I	GAAGAC	2 cut(s)	213, 222
BstX2I	RGATCY	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	50, 388
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	217
CviJI	RGCY	4 cut(s)	300, 330, 494, 506
CviKI_1	RGCY	4 cut(s)	300, 330, 494, 506
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	100, 517
EcoT14I	CCWWGG	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	529
FaiI	YATR	3 cut(s)	8, 120, 440
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
Fnu4HI	GCNGC	4 cut(s)	298, 461, 464, 535
FokI	GGATG	2 cut(s)	57, 395
Fsp4HI	GCNGC	4 cut(s)	298, 461, 464, 535
FspBI	CTAG	3 cut(s)	59, 327, 491
GluI	GCNGC	4 cut(s)	298, 461, 464, 535
HinfI	GANTC	3 cut(s)	38, 65, 386
HphI	GGTGA	2 cut(s)	3, 533
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	166, 418
Hpy188III	TCNNGA	2 cut(s)	42, 177
Hpy8I	GTNNAC	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	24, 397, 431, 463
HpyF3I	CTNAG	1 cut(s)	417
Kzo9I	GATC	1 cut(s)	148
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	9 cut(s)	27, 87, 114, 162, 211, 348, 504, 516, 531
Lsp1109I	GCAGC	3 cut(s)	309, 447, 475
LweI	GCATC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	517
MaeI	CTAG	3 cut(s)	59, 327, 491
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	3 cut(s)	197, 291, 370
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	79, 192, 350, 412
MseI	TTAA	2 cut(s)	362, 369
MslI	CAYNNNNRTG	2 cut(s)	19, 315
MspR9I	CCNGG	2 cut(s)	102, 519
MvaI	CCWGG	2 cut(s)	102, 519
NdeII	GATC	1 cut(s)	148
NheI	GCTAGC	1 cut(s)	326
NlaIV	GGNNCC	1 cut(s)	253
NmeAIII	GCCGAG	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	38, 386
PkrI	GCNGC	4 cut(s)	299, 462, 465, 536
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	100, 517
PspGI	CCWGG	2 cut(s)	100, 517
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	19, 315
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	362, 369
SatI	GCNGC	4 cut(s)	298, 461, 464, 535
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	102, 519
SetI	ASST	8 cut(s)	60, 103, 184, 230, 315, 332, 508, 523
SexAI	ACCWGGT	1 cut(s)	517
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	461
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	19, 315
Sse9I	AATT	3 cut(s)	197, 291, 370
SsiI	CCGC	1 cut(s)	534
SspMI	CTAG	3 cut(s)	59, 327, 491
StyD4I	CCNGG	2 cut(s)	100, 517
StyI	CCWWGG	1 cut(s)	529
TaqI	TCGA	2 cut(s)	155, 201
TasI	AATT	3 cut(s)	197, 291, 370
TauI	GCSGC	1 cut(s)	537
TfiI	GAWTC	2 cut(s)	38, 386
Tru1I	TTAA	2 cut(s)	362, 369
Tru9I	TTAA	2 cut(s)	362, 369
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	3 cut(s)	297, 460, 463
TspDTI	ATGAA	3 cut(s)	17, 219, 399
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	3 cut(s)	59, 327, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.