Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Forward (+)

66591906 .. 66592749

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG488400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAACATATCACAATCACAATACAATAGTGGGTGTGAATCTGGGTGGACACATTACCTAGATCAGTCGTATCTTTCTGGAAGCCATGGGATTCAAAAAGGTGATGATTATGTAGGAACAAAACCAGAATTTGAAGAGGAAGAAGAGGAGGAGGATCTATCCATGGTGTCTGATGCTTCTTCTGGACCTCCACATTACCAAGAATTATATGAAGATGGGTGTTCGTTTTCTGTTAATTCTTCGGCTTCCAAATTAGGCAAGAAAAAGAAGAGCAAAGAAAGTAGAGGCAAAGAACAACACCACCATCTTGATGACACCGCTAGCTCCTCAGTCTTCAACTACTACTCCAAGAAAAAGATGAGTACTCTTTCCAAGAATGAACCTTCAATGCAGAATGTACTGGAATACTCTGAGGGTTTCTCAACAACACATATGAAGGGAAAATCTGCTTTGCTGCAGCACTTTGGTTACTTGAACTCATCTCTAGCTCCACAAAACCTGGTGATTTTCAAGGAGGAGGCTGGGAGTAATGATTATGATGGGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.43

Weight (kDa)

5.07

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	2 cut(s)	364, 399
AgsI	TTSAA	6 cut(s)	95, 134, 337, 387, 475, 511
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	2 cut(s)	324, 488
AluI	AGCT	2 cut(s)	324, 488
AlwI	GGATC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	454, 457
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	113, 514
AsuNHI	GCTAGC	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	441, 469
BccI	CCATC	3 cut(s)	209, 312, 533
BciT130I	CCWGG	1 cut(s)	500
BfaI	CTAG	3 cut(s)	59, 321, 485
BfmI	CTRYAG	1 cut(s)	455
BisI	GCNGC	2 cut(s)	455, 458
BlsI	GCNGC	2 cut(s)	456, 459
BmcAI	AGTACT	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	325
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BsaJI	CCNNGG	2 cut(s)	85, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse1I	ACTGG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	85, 162
BseMII	CTCAG	2 cut(s)	342, 402
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	4 cut(s)	161, 164, 316, 530
BseXI	GCAGC	2 cut(s)	441, 469
BseYI	CCCAGC	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	61, 154
Bsp19I	CCATGG	2 cut(s)	85, 162
BspACI	CCGC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	341, 403
BspMAI	CTGCAG	1 cut(s)	459
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	85, 162
BssMI	GATC	2 cut(s)	61, 154
BssT1I	CCWWGG	2 cut(s)	85, 162
Bst2UI	CCWGG	1 cut(s)	500
Bst6I	CTCTTC	3 cut(s)	129, 138, 263
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	328, 411
BstDSI	CCRYGG	2 cut(s)	85, 162
BstKTI	GATC	2 cut(s)	64, 157
BstMBI	GATC	2 cut(s)	61, 154
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	455
BstV1I	GCAGC	2 cut(s)	441, 469
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtgI	CCRYGG	2 cut(s)	85, 162
Cac8I	GCNNGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	363, 398
CviAII	CATG	2 cut(s)	86, 163
CviJI	RGCY	5 cut(s)	84, 245, 324, 488, 521
CviKI_1	RGCY	5 cut(s)	84, 245, 324, 488, 521
CviQI	GTAC	2 cut(s)	363, 398
DdeI	CTNAG	2 cut(s)	328, 411
DpnI	GATC	2 cut(s)	63, 156
DpnII	GATC	2 cut(s)	61, 154
Eam1104I	CTCTTC	3 cut(s)	129, 138, 263
EarI	CTCTTC	3 cut(s)	129, 138, 263
Eco130I	CCWWGG	2 cut(s)	85, 162
Eco47I	GGWCC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	2 cut(s)	85, 162
ErhI	CCWWGG	2 cut(s)	85, 162
FaeI	CATG	2 cut(s)	89, 166
FaiI	YATR	9 cut(s)	8, 87, 111, 164, 208, 210, 432, 434, 537
FatI	CATG	2 cut(s)	85, 162
FauNDI	CATATG	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	455, 458
Fsp4HI	GCNGC	2 cut(s)	455, 458
FspBI	CTAG	3 cut(s)	59, 321, 485
GluI	GCNGC	2 cut(s)	455, 458
GsaI	CCCAGC	1 cut(s)	525
Hin1II	CATG	2 cut(s)	89, 166
HinfI	GANTC	2 cut(s)	38, 91
HphI	GGTGA	2 cut(s)	113, 514
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	172, 412
Hpy188III	TCNNGA	3 cut(s)	78, 183, 308
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	393, 430
HpyCH4V	TGCA	2 cut(s)	391, 457
HpyF3I	CTNAG	2 cut(s)	328, 411
Hsp92II	CATG	2 cut(s)	89, 166
Kzo9I	GATC	2 cut(s)	61, 154
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	2 cut(s)	329, 493
LpnPI	CCDG	8 cut(s)	27, 63, 138, 168, 386, 485, 507, 512
Lsp1109I	GCAGC	2 cut(s)	441, 469
LweI	GCATC	1 cut(s)	163
MabI	ACCWGGT	1 cut(s)	498
MaeI	CTAG	3 cut(s)	59, 321, 485
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	2 cut(s)	63, 156
MboI	GATC	2 cut(s)	61, 154
MboII	GAAGA	8 cut(s)	146, 152, 155, 171, 224, 231, 280, 325
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	4 cut(s)	128, 203, 235, 251
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
NcoI	CCATGG	2 cut(s)	85, 162
NdeI	CATATG	1 cut(s)	432
NdeII	GATC	2 cut(s)	61, 154
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	89, 166
PciSI	GCTCTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	38, 91
PkrI	GCNGC	2 cut(s)	456, 459
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	498
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	364, 399
RsaNI	GTAC	2 cut(s)	363, 398
RseI	CAYNNNNRTG	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	455, 458
Sau3AI	GATC	2 cut(s)	61, 154
Sau96I	GGNCC	1 cut(s)	185
ScaI	AGTACT	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	500
SetI	ASST	7 cut(s)	60, 103, 190, 326, 385, 490, 501
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	4 cut(s)	128, 203, 235, 251
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	3 cut(s)	59, 321, 485
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	2 cut(s)	85, 162
TasI	AATT	4 cut(s)	128, 203, 235, 251
TatI	WGTACW	2 cut(s)	362, 397
TfiI	GAWTC	2 cut(s)	38, 91
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseI	GCWGC	2 cut(s)	454, 457
TspDTI	ATGAA	4 cut(s)	17, 225, 393, 449
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	3 cut(s)	59, 321, 485
ZrmI	AGTACT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.