Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002016.1

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Reverse (-)

93216 .. 94164

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002016.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgaatgtgttggcctcggaatgcagtagtggttgtgagtccggttggactctgtacttagagcaatcttttgtttctcaacatccgagtggttcacatagaggtaatagtaatggtttttgtgaggagtataaggaaaaaagaattagctatagtaataaggatgaagaagaagaagaagaccagtcaatggtttctgatgcttcttctgggcctcctcatttcaatgaagatgaggtttacattgatgaaaacaataatgggtatttttgtcctccatccaaagatgttagaacattgaagtttggaggtaaaaagcagaagatcaaagaaaagggtagatgtggtgttcaagatcaacagcaacagcaaccatcttttctagatgacactgctagctccccttttttcaacatttccaagaacaatttgatggtgtccaataatcaggcttcaggtgatagtgtcctggatttctcacaaggtttctcatcaactcattttcaggggagatctgcataccaagaccactatggtttcttacaatctactctacctggaaatccacttcaggatcaaaaccagtggtttgaagggaatgagataacaagatcttcatatcatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.55

Weight (kDa)

4.79

Isoelectric Point (pI)

62.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AclWI	GGATC	1 cut(s)	582
AcuI	CTGAAG	2 cut(s)	438, 554
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	226, 301, 353, 412, 593
AjnI	CCWGG	2 cut(s)	468, 556
AluBI	AGCT	2 cut(s)	150, 399
AluI	AGCT	2 cut(s)	150, 399
AlwI	GGATC	1 cut(s)	582
AoxI	GGCC	2 cut(s)	12, 212
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	470
AsuNHI	GCTAGC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	186
BccI	CCATC	3 cut(s)	286, 382, 427
BciT130I	CCWGG	2 cut(s)	470, 558
BfaI	CTAG	2 cut(s)	383, 396
BfmI	CTRYAG	1 cut(s)	151
BglII	AGATCT	2 cut(s)	512, 611
Bme1390I	CCNGG	2 cut(s)	470, 558
BmgT120I	GGNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	470, 558
BmsI	GCATC	1 cut(s)	190
BmtI	GCTAGC	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	184, 583
BseBI	CCWGG	2 cut(s)	470, 558
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	3 cut(s)	82, 169, 278
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	184, 583
BseRI	GAGGAG	2 cut(s)	140, 207
BshFI	GGCC	2 cut(s)	14, 214
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	14, 214
Bsp143I	GATC	5 cut(s)	324, 355, 512, 574, 611
BspANI	GGCC	2 cut(s)	14, 214
BspOI	GCTAGC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	184, 583
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	5 cut(s)	324, 355, 512, 574, 611
Bst2UI	CCWGG	2 cut(s)	470, 558
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	82, 169, 278
BstKTI	GATC	5 cut(s)	327, 358, 515, 577, 614
BstMBI	GATC	5 cut(s)	324, 355, 512, 574, 611
BstNI	CCWGG	2 cut(s)	470, 558
BstSCI	CCNGG	2 cut(s)	468, 556
BstSFI	CTRYAG	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	512, 611
BstYI	RGATCY	2 cut(s)	512, 611
BsuRI	GGCC	2 cut(s)	14, 214
BtsCI	GGATG	3 cut(s)	82, 169, 278
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	390, 590
Cac8I	GCNNGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	566, 601
CviJI	RGCY	5 cut(s)	14, 150, 214, 399, 452
CviKI_1	RGCY	5 cut(s)	14, 150, 214, 399, 452
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	5 cut(s)	326, 357, 514, 576, 613
DpnII	GATC	5 cut(s)	324, 355, 512, 574, 611
Eco57I	CTGAAG	2 cut(s)	438, 554
EcoRII	CCWGG	2 cut(s)	468, 556
FaiI	YATR	6 cut(s)	99, 132, 153, 520, 534, 619
FokI	GGATG	3 cut(s)	69, 176, 265
FspBI	CTAG	2 cut(s)	383, 396
HaeIII	GGCC	2 cut(s)	14, 214
HapII	CCGG	1 cut(s)	42
HinfI	GANTC	2 cut(s)	38, 49
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	95, 241
Hpy188I	TCNGA	3 cut(s)	19, 87, 199
Hpy188III	TCNNGA	3 cut(s)	353, 383, 572
Hpy8I	GTNNAC	2 cut(s)	95, 241
HpyAV	CCTTC	1 cut(s)	587
HpyCH4V	TGCA	2 cut(s)	24, 518
HpyF3I	CTNAG	1 cut(s)	58
Kzo9I	GATC	5 cut(s)	324, 355, 512, 574, 611
LmnI	GCTCC	1 cut(s)	404
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	383, 396
MalI	GATC	5 cut(s)	326, 357, 514, 576, 613
MboI	GATC	5 cut(s)	324, 355, 512, 574, 611
MboII	GAAGA	9 cut(s)	179, 182, 185, 188, 191, 198, 242, 334, 606
MflI	RGATCY	2 cut(s)	512, 611
MluCI	AATT	2 cut(s)	144, 427
MlyI	GAGTC	2 cut(s)	43, 47
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	8 cut(s)	25, 95, 118, 225, 228, 229, 285, 302
MslI	CAYNNNNRTG	2 cut(s)	87, 225
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	470, 558
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	2 cut(s)	470, 558
NdeII	GATC	5 cut(s)	324, 355, 512, 574, 611
NheI	GCTAGC	1 cut(s)	395
PctI	GAATGC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	468
PleI	GAGTC	2 cut(s)	43, 46
PpsI	GAGTC	2 cut(s)	43, 46
Psp6I	CCWGG	2 cut(s)	468, 556
PspGI	CCWGG	2 cut(s)	468, 556
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	512, 611
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	87, 225
Sau3AI	GATC	5 cut(s)	324, 355, 512, 574, 611
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	2 cut(s)	43, 47
ScrFI	CCNGG	2 cut(s)	470, 558
SetI	ASST	8 cut(s)	106, 152, 240, 313, 401, 460, 487, 559
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	87, 225
Sse9I	AATT	2 cut(s)	144, 427
SspMI	CTAG	2 cut(s)	383, 396
StyD4I	CCNGG	2 cut(s)	468, 556
TasI	AATT	2 cut(s)	144, 427
TatI	WGTACW	1 cut(s)	54
TscAI	CASTG	2 cut(s)	397, 590
TspDTI	ATGAA	5 cut(s)	17, 180, 243, 264, 606
TspRI	CASTG	2 cut(s)	397, 590
Van91I	CCANNNNNTGG	1 cut(s)	190
XbaI	TCTAGA	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XspI	CTAG	2 cut(s)	383, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.