Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Forward (+)

61540005 .. 61540970

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015088

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAATGTGTTGGCCTCGGAATGCAGTAGTGGTTGTGAGTCCGGTTGGACTCTGTACTTAGAGCAATCTTTTGTTTCTCAACATCCAAGTGGCTCACATAGAGGTAATAGTAATGGTTGTTGTGAGGAGTATAAGGAAAAAAGAATTAGCTATAGTAATAAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACCAGTCAATGGTTTCTGATGCTTCTTCTGGGCCTCCTCATTTCAATGAAGATGAGGTTTACTTTGATGAAAACAATAATGGGTATTTTTGTCCTCCATCCAAAGATGTTAGAACATTGAAGTTTGGAGGTAAAAAGCAGAAGATCAAAGAAAAGGGTAGATGTGGTGTTCAAGAACAACAGCAACAGCAACCATCTTTTCTAGATGACACTGCTAGCTCCCCTTTTTTCAACATTTCCAAGAACAATTTCATGGTGTCCAATAATCAAGCTTCAGGTGATAGTGTCCTGGATTTCTCACAAGGTTTCTCATCAACTCATTTTCAGGGGAGATCTGCATACCAAGACCACTATGGTTTCTTACAATCTACTCTACCTGGAAATCAACTTCAGGATCAAAACCAGTGGTTTGAAGGGAATGAGATAACAAGATCTTCATATCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.52

Weight (kDa)

4.54

Isoelectric Point (pI)

72.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	211
AclWI	GGATC	1 cut(s)	603
AcuI	CTGAAG	2 cut(s)	459, 575
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	5 cut(s)	247, 322, 374, 433, 614
AjnI	CCWGG	2 cut(s)	489, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	3 cut(s)	150, 420, 473
AluI	AGCT	3 cut(s)	150, 420, 473
AlwI	GGATC	1 cut(s)	603
AoxI	GGCC	2 cut(s)	12, 233
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	491
AsuNHI	GCTAGC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	207
BccI	CCATC	2 cut(s)	307, 403
BciT130I	CCWGG	2 cut(s)	491, 579
BfaI	CTAG	2 cut(s)	404, 417
BfmI	CTRYAG	1 cut(s)	151
BglII	AGATCT	2 cut(s)	533, 632
Bme1390I	CCNGG	2 cut(s)	491, 579
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	491, 579
BmsI	GCATC	1 cut(s)	211
BmtI	GCTAGC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	205, 604
BseBI	CCWGG	2 cut(s)	491, 579
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	3 cut(s)	82, 169, 299
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	205, 604
BseRI	GAGGAG	2 cut(s)	140, 228
BshFI	GGCC	2 cut(s)	14, 235
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	14, 235
Bsp143I	GATC	4 cut(s)	345, 533, 595, 632
BspANI	GGCC	2 cut(s)	14, 235
BspOI	GCTAGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	205, 604
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	4 cut(s)	345, 533, 595, 632
Bst2UI	CCWGG	2 cut(s)	491, 579
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	82, 169, 299
BstKTI	GATC	4 cut(s)	348, 536, 598, 635
BstMBI	GATC	4 cut(s)	345, 533, 595, 632
BstNI	CCWGG	2 cut(s)	491, 579
BstSCI	CCNGG	2 cut(s)	489, 577
BstSFI	CTRYAG	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	533, 632
BstYI	RGATCY	2 cut(s)	533, 632
BsuRI	GGCC	2 cut(s)	14, 235
BtsCI	GGATG	3 cut(s)	82, 169, 299
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	411, 611
Cac8I	GCNNGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	587, 622
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	6 cut(s)	14, 93, 150, 235, 420, 473
CviKI_1	RGCY	6 cut(s)	14, 93, 150, 235, 420, 473
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	4 cut(s)	347, 535, 597, 634
DpnII	GATC	4 cut(s)	345, 533, 595, 632
Eco57I	CTGAAG	2 cut(s)	459, 575
EcoRII	CCWGG	2 cut(s)	489, 577
FaeI	CATG	1 cut(s)	457
FaiI	YATR	7 cut(s)	99, 132, 153, 455, 541, 555, 640
FatI	CATG	1 cut(s)	453
FokI	GGATG	3 cut(s)	69, 176, 286
FspBI	CTAG	2 cut(s)	404, 417
HaeIII	GGCC	2 cut(s)	14, 235
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	2 cut(s)	38, 49
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	19, 220
Hpy188III	TCNNGA	3 cut(s)	374, 404, 593
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	608
HpyCH4V	TGCA	2 cut(s)	24, 539
HpyF3I	CTNAG	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	345, 533, 595, 632
LmnI	GCTCC	1 cut(s)	425
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	404, 417
MalI	GATC	4 cut(s)	347, 535, 597, 634
MboI	GATC	4 cut(s)	345, 533, 595, 632
MflI	RGATCY	2 cut(s)	533, 632
MluCI	AATT	2 cut(s)	144, 448
MlyI	GAGTC	2 cut(s)	43, 47
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	8 cut(s)	25, 95, 118, 246, 249, 250, 306, 323
MroXI	GAANNNNTTC	1 cut(s)	449
MslI	CAYNNNNRTG	2 cut(s)	87, 246
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	491, 579
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	2 cut(s)	491, 579
NdeII	GATC	4 cut(s)	345, 533, 595, 632
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	1 cut(s)	457
PctI	GAATGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	489
PleI	GAGTC	2 cut(s)	43, 46
PpsI	GAGTC	2 cut(s)	43, 46
Psp6I	CCWGG	2 cut(s)	489, 577
PspGI	CCWGG	2 cut(s)	489, 577
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	533, 632
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	87, 246
Sau3AI	GATC	4 cut(s)	345, 533, 595, 632
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	2 cut(s)	43, 47
ScrFI	CCNGG	2 cut(s)	491, 579
SetI	ASST	9 cut(s)	106, 152, 261, 334, 422, 475, 481, 508, 580
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	87, 246
Sse9I	AATT	2 cut(s)	144, 448
SspMI	CTAG	2 cut(s)	404, 417
StyD4I	CCNGG	2 cut(s)	489, 577
TasI	AATT	2 cut(s)	144, 448
TatI	WGTACW	1 cut(s)	54
TscAI	CASTG	2 cut(s)	418, 611
TspDTI	ATGAA	6 cut(s)	17, 180, 264, 285, 442, 627
TspRI	CASTG	2 cut(s)	418, 611
Van91I	CCANNNNNTGG	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	404, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.