Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Reverse (-)

7681403 .. 7682925

Gene Structure 1523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAATGTGTTGGCCTCGGAATGCAGTAGTGGTTGTGAGTCCGGTTGGACTCTGTACTTAGAGCAATCTTTTGTTTCTCAACATCCGAGTGGTTCACATAGAGGTAATAGTAATGGTTTTTGTGAGGAGTATAAGGAAAAAAGAATTAGCTATAGTAATAAGGATGAAGAAGAAGAAGAAGAAGACCAGTCAATGGTTTCTGATGCTTCTTCTGGGCCTCCTCATTTCAATGAAGATGAGGTTTACTTTGATGAAAACAATAATGGGTATTTTTGTCCTCCATCCAAAGATGTTAGAACATTGAAGTTTGGAGGTAAAAAGCAGAAGATCAAAGAAAAGGGTAGATGTGGTGTTCAAGATCAACAGCAACAGCAACCATCTTTTCTAGATGACACTGCTAGCTCCCCTTTTTTCAACATTTCCAAGAACAATTTGATGGTGTCCAATAATCAGGCTTCAGGTGATAGTGTCCTGGATTTCTCACAAGGTTTCTCATCAACTCATTTTCAGGGCAGATCTGCATACCAAGACCACTATGGTTTCTTACAATCTACTCTACCTGGAAATCCACTTCAGGATCAAAACCAGTGGTTTGAAGGGAATGAGATAACAAGATCTTCATATCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.71

Weight (kDa)

4.74

Isoelectric Point (pI)

64.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AclWI	GGATC	1 cut(s)	585
AcuI	CTGAAG	2 cut(s)	441, 557
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	5 cut(s)	229, 304, 356, 415, 596
AjnI	CCWGG	2 cut(s)	471, 559
AluBI	AGCT	2 cut(s)	150, 402
AluI	AGCT	2 cut(s)	150, 402
AlwI	GGATC	1 cut(s)	585
AoxI	GGCC	2 cut(s)	12, 215
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	473
AsuNHI	GCTAGC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	189
BccI	CCATC	3 cut(s)	289, 385, 430
BciT130I	CCWGG	2 cut(s)	473, 561
BfaI	CTAG	2 cut(s)	386, 399
BfmI	CTRYAG	1 cut(s)	151
BglII	AGATCT	2 cut(s)	515, 614
Bme1390I	CCNGG	2 cut(s)	473, 561
BmgT120I	GGNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	473, 561
BmsI	GCATC	1 cut(s)	193
BmtI	GCTAGC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	187, 586
BseBI	CCWGG	2 cut(s)	473, 561
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	3 cut(s)	82, 169, 281
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseNI	ACTGG	2 cut(s)	187, 586
BseRI	GAGGAG	2 cut(s)	140, 210
BshFI	GGCC	2 cut(s)	14, 217
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	14, 217
Bsp143I	GATC	5 cut(s)	327, 358, 515, 577, 614
BspANI	GGCC	2 cut(s)	14, 217
BspOI	GCTAGC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	585
BsrI	ACTGG	2 cut(s)	187, 586
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	5 cut(s)	327, 358, 515, 577, 614
Bst2UI	CCWGG	2 cut(s)	473, 561
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	82, 169, 281
BstKTI	GATC	5 cut(s)	330, 361, 518, 580, 617
BstMBI	GATC	5 cut(s)	327, 358, 515, 577, 614
BstNI	CCWGG	2 cut(s)	473, 561
BstSCI	CCNGG	2 cut(s)	471, 559
BstSFI	CTRYAG	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	515, 614
BstYI	RGATCY	2 cut(s)	515, 614
BsuRI	GGCC	2 cut(s)	14, 217
BtsCI	GGATG	3 cut(s)	82, 169, 281
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	393, 593
Cac8I	GCNNGC	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	569, 604
CviJI	RGCY	5 cut(s)	14, 150, 217, 402, 455
CviKI_1	RGCY	5 cut(s)	14, 150, 217, 402, 455
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	5 cut(s)	329, 360, 517, 579, 616
DpnII	GATC	5 cut(s)	327, 358, 515, 577, 614
Eco57I	CTGAAG	2 cut(s)	441, 557
EcoRII	CCWGG	2 cut(s)	471, 559
FaiI	YATR	6 cut(s)	99, 132, 153, 523, 537, 622
FokI	GGATG	3 cut(s)	69, 176, 268
FspBI	CTAG	2 cut(s)	386, 399
HaeIII	GGCC	2 cut(s)	14, 217
HapII	CCGG	1 cut(s)	42
HinfI	GANTC	2 cut(s)	38, 49
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	2 cut(s)	95, 244
Hpy188I	TCNGA	3 cut(s)	19, 87, 202
Hpy188III	TCNNGA	3 cut(s)	356, 386, 575
Hpy8I	GTNNAC	2 cut(s)	95, 244
HpyAV	CCTTC	1 cut(s)	590
HpyCH4V	TGCA	2 cut(s)	24, 521
HpyF3I	CTNAG	1 cut(s)	58
Kzo9I	GATC	5 cut(s)	327, 358, 515, 577, 614
LmnI	GCTCC	1 cut(s)	407
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	386, 399
MalI	GATC	5 cut(s)	329, 360, 517, 579, 616
MboI	GATC	5 cut(s)	327, 358, 515, 577, 614
MflI	RGATCY	2 cut(s)	515, 614
MluCI	AATT	2 cut(s)	144, 430
MlyI	GAGTC	2 cut(s)	43, 47
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	8 cut(s)	25, 95, 118, 228, 231, 232, 288, 305
MslI	CAYNNNNRTG	2 cut(s)	87, 228
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	473, 561
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	2 cut(s)	473, 561
NdeII	GATC	5 cut(s)	327, 358, 515, 577, 614
NheI	GCTAGC	1 cut(s)	398
PctI	GAATGC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	471
PleI	GAGTC	2 cut(s)	43, 46
PpsI	GAGTC	2 cut(s)	43, 46
Psp6I	CCWGG	2 cut(s)	471, 559
PspGI	CCWGG	2 cut(s)	471, 559
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	515, 614
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	87, 228
Sau3AI	GATC	5 cut(s)	327, 358, 515, 577, 614
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	2 cut(s)	43, 47
ScrFI	CCNGG	2 cut(s)	473, 561
SetI	ASST	8 cut(s)	106, 152, 243, 316, 404, 463, 490, 562
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	87, 228
Sse9I	AATT	2 cut(s)	144, 430
SspMI	CTAG	2 cut(s)	386, 399
StyD4I	CCNGG	2 cut(s)	471, 559
TasI	AATT	2 cut(s)	144, 430
TatI	WGTACW	1 cut(s)	54
TscAI	CASTG	2 cut(s)	400, 593
TspDTI	ATGAA	5 cut(s)	17, 180, 246, 267, 609
TspRI	CASTG	2 cut(s)	400, 593
Van91I	CCANNNNNTGG	1 cut(s)	193
XbaI	TCTAGA	1 cut(s)	385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XspI	CTAG	2 cut(s)	386, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.