Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Reverse (-)

7827200 .. 7829152

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAATGTGTTGGCCTCGGAATGCAGTAGTGGTTGTGAGTCCGGTTGGACTCTGTACTTAGAGCAATCTTTTGTTTCTCAACATCCGAGTGGTTCACATAGAGGTAATAGTAATGGTTTTTGTGAGGAGTATAAGGAAAAAAGAATTAGCTATAGTAATAAGGATGAAGAAGAAGAAGACCAGTCAATGGTTTCTGATGCTTCTTCTGGGCCTCCTCATTTCAATGAAGATGAGGTTTACTTTGATGAAAACAATAATGGGTATTTTTGTCCTCCATCCAAAGATGTTAGAACATTGAAGTTTGGAGGTAAAAAGCAGAAGATCAAAGAAAAGGGTAGATGTGGTGTTCAAGATCAACAGCAACAGCAACCATCTTTTCTAGATGACACTGCTAGCTCCCCTTTTTTCAACATTTCCAAGAACAATTTGATGGTGTCCAATAATCAGGCTTCAGGTGATAGTGTCCTGGATTTCTCACAAGGTTTCTCATCAACTCATTTTCAGGGGAGATCTGCATACCAAGACCACTATGGTTTCTTACAATCTACTCTACCTGGAAATCCACTTCAGGATCAAAACCAGTGGTTTGAAGGGAATGAGATAACAAGATCTTCATATCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.45

Weight (kDa)

4.85

Isoelectric Point (pI)

62.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	187
AclWI	GGATC	1 cut(s)	579
AcuI	CTGAAG	2 cut(s)	435, 551
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	5 cut(s)	223, 298, 350, 409, 590
AjnI	CCWGG	2 cut(s)	465, 553
AluBI	AGCT	2 cut(s)	150, 396
AluI	AGCT	2 cut(s)	150, 396
AlwI	GGATC	1 cut(s)	579
AoxI	GGCC	2 cut(s)	12, 209
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	467
AsuNHI	GCTAGC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	183
BccI	CCATC	3 cut(s)	283, 379, 424
BciT130I	CCWGG	2 cut(s)	467, 555
BfaI	CTAG	2 cut(s)	380, 393
BfmI	CTRYAG	1 cut(s)	151
BglII	AGATCT	2 cut(s)	509, 608
Bme1390I	CCNGG	2 cut(s)	467, 555
BmgT120I	GGNCC	1 cut(s)	209
BmrFI	CCNGG	2 cut(s)	467, 555
BmsI	GCATC	1 cut(s)	187
BmtI	GCTAGC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	181, 580
BseBI	CCWGG	2 cut(s)	467, 555
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	3 cut(s)	82, 169, 275
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	2 cut(s)	181, 580
BseRI	GAGGAG	2 cut(s)	140, 204
BshFI	GGCC	2 cut(s)	14, 211
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	14, 211
Bsp143I	GATC	5 cut(s)	321, 352, 509, 571, 608
BspANI	GGCC	2 cut(s)	14, 211
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	181, 580
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	5 cut(s)	321, 352, 509, 571, 608
Bst2UI	CCWGG	2 cut(s)	467, 555
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	82, 169, 275
BstKTI	GATC	5 cut(s)	324, 355, 512, 574, 611
BstMBI	GATC	5 cut(s)	321, 352, 509, 571, 608
BstNI	CCWGG	2 cut(s)	467, 555
BstSCI	CCNGG	2 cut(s)	465, 553
BstSFI	CTRYAG	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	509, 608
BstYI	RGATCY	2 cut(s)	509, 608
BsuRI	GGCC	2 cut(s)	14, 211
BtsCI	GGATG	3 cut(s)	82, 169, 275
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	387, 587
Cac8I	GCNNGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	563, 598
CviJI	RGCY	5 cut(s)	14, 150, 211, 396, 449
CviKI_1	RGCY	5 cut(s)	14, 150, 211, 396, 449
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	5 cut(s)	323, 354, 511, 573, 610
DpnII	GATC	5 cut(s)	321, 352, 509, 571, 608
Eco57I	CTGAAG	2 cut(s)	435, 551
EcoRII	CCWGG	2 cut(s)	465, 553
FaiI	YATR	6 cut(s)	99, 132, 153, 517, 531, 616
FokI	GGATG	3 cut(s)	69, 176, 262
FspBI	CTAG	2 cut(s)	380, 393
HaeIII	GGCC	2 cut(s)	14, 211
HapII	CCGG	1 cut(s)	42
HinfI	GANTC	2 cut(s)	38, 49
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	95, 238
Hpy188I	TCNGA	3 cut(s)	19, 87, 196
Hpy188III	TCNNGA	3 cut(s)	350, 380, 569
Hpy8I	GTNNAC	2 cut(s)	95, 238
HpyAV	CCTTC	1 cut(s)	584
HpyCH4V	TGCA	2 cut(s)	24, 515
HpyF3I	CTNAG	1 cut(s)	58
Kzo9I	GATC	5 cut(s)	321, 352, 509, 571, 608
LmnI	GCTCC	1 cut(s)	401
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	380, 393
MalI	GATC	5 cut(s)	323, 354, 511, 573, 610
MboI	GATC	5 cut(s)	321, 352, 509, 571, 608
MboII	GAAGA	8 cut(s)	179, 182, 185, 188, 195, 239, 331, 603
MflI	RGATCY	2 cut(s)	509, 608
MluCI	AATT	2 cut(s)	144, 424
MlyI	GAGTC	2 cut(s)	43, 47
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	8 cut(s)	25, 95, 118, 222, 225, 226, 282, 299
MslI	CAYNNNNRTG	2 cut(s)	87, 222
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	467, 555
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	2 cut(s)	467, 555
NdeII	GATC	5 cut(s)	321, 352, 509, 571, 608
NheI	GCTAGC	1 cut(s)	392
PctI	GAATGC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	465
PleI	GAGTC	2 cut(s)	43, 46
PpsI	GAGTC	2 cut(s)	43, 46
Psp6I	CCWGG	2 cut(s)	465, 553
PspGI	CCWGG	2 cut(s)	465, 553
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	509, 608
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	2 cut(s)	87, 222
Sau3AI	GATC	5 cut(s)	321, 352, 509, 571, 608
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	2 cut(s)	43, 47
ScrFI	CCNGG	2 cut(s)	467, 555
SetI	ASST	8 cut(s)	106, 152, 237, 310, 398, 457, 484, 556
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	87, 222
Sse9I	AATT	2 cut(s)	144, 424
SspMI	CTAG	2 cut(s)	380, 393
StyD4I	CCNGG	2 cut(s)	465, 553
TasI	AATT	2 cut(s)	144, 424
TatI	WGTACW	1 cut(s)	54
TscAI	CASTG	2 cut(s)	394, 587
TspDTI	ATGAA	5 cut(s)	17, 180, 240, 261, 603
TspRI	CASTG	2 cut(s)	394, 587
Van91I	CCANNNNNTGG	1 cut(s)	187
XbaI	TCTAGA	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XspI	CTAG	2 cut(s)	380, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.