Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003210

Physical Location & Seq

Genomic Coordinates Forward (+)

17776492 .. 17777751

Gene Structure 1260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1108100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAATGTGTTGGCCTCAGAATGCAGTAGTGGTTGTGAGTCTGGTTGGACTGTATACTTGGAGCACTCTAATTATCTTTCTCGTAATCAAAGTGCTTCACGCAGTAGAGATAATAATTGCAAGAGCAAGCCTGATTTTTGTGGTAAACAAGTTATTCATGATGAGGAGGGGGATGATGAAGAAGAAGATCAATCAATGGTTTCTGATGCATCTTCTGGGCCTCCACATTTCAATGAAGATGAAATTTACTTGGATGAAAAAAACAACAACAATAATTATGGGTGTTTTTATCCTCCTCAAATATCCAAGGATGCTGGAAATTTGAAGTTTGGAAGAAAAAAGCAGCAGAGAAATAATATCAAAGGAAAAGGTAGGCGCTCATGTGGTGATCAACAACAACCATCTTTATTAGATGACACTGCTAGCTCTCCTGTCTTCAACTACTCCAAGAACAACTTCATTGTGTCAAATAATCAAGCTTTTGGAGACAGTGTTCTGGATTATTCACAAGGTTTCTCATCTACACATTTTCAGGGGAGATCTGCATACCAAGACCACTGTGGTTTCTTAAAATCTACTCCATCTGGAAATAACCAGTGGTTTCAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.72

Weight (kDa)

5.2

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33800 AT4G33800
fragaria_vesca	FvH4_2g03590 FvH4_2g03590 FvH4_2g32900 FvH4_2g32900
malus_domestica	MD05G1102500.v1.1 MD08G1080400.v1.1 MD10G1108100.v1.1 MD15G1067500.v1.1
prunus_persica	Prupe.1G421400_v2.0.a1 Prupe.1G421400_v2.0.a1 Prupe.8G147000_v2.0.a1
pyrus_communis	pycom08g06640 pycom10g09340 pycom15g06400
rosa_chinensis	RchiOBHm_Chr6g0252561 RchiOBHm_Chr6g0309821
rosa_laevigata	RLG00000010533 RLG00000015088
rosa_multiflora	Rmu_sc0002016.1_g000030 Rmu_ssc0000373.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159150 Rroxscaffold_7G00212580
rosa_rugosa	Rorug05G0536900 Rorug06G0375000 Rorug06G0375100
rosa_samantha	Rh6AG053300 Rh6AG488400 Rh6BG047100 Rh6BG498000 Rh6CG045800 Rh6CG502800 Rh6DG041500 Rh6DG488900
rosa_wichuraiana	Rw6G004780 Rw6G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	243, 319
AgsI	TTSAA	4 cut(s)	232, 325, 439, 605
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AloI	GAACNNNNNNTCC	2 cut(s)	477, 509
AluBI	AGCT	2 cut(s)	426, 479
AluI	AGCT	2 cut(s)	426, 479
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	480
AoxI	GGCC	2 cut(s)	12, 218
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	2 cut(s)	243, 319
Asp700I	GAANNNNTTC	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	398
AsuNHI	GCTAGC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	409, 589
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	379
BglII	AGATCT	1 cut(s)	539
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	218
BmsI	GCATC	3 cut(s)	196, 218, 301
BmtI	GCTAGC	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	427
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bse1I	ACTGG	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	3 cut(s)	178, 259, 316
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	2 cut(s)	179, 285
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	2 cut(s)	14, 220
BsiHKAI	GWGCWC	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	14, 220
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	187, 388, 539
BspANI	GGCC	2 cut(s)	14, 220
BspCNI	CTCAG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	3 cut(s)	187, 388, 539
BssNAI	GTATAC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	306
Bst1107I	GTATAC	1 cut(s)	55
Bst4CI	ACNGT	3 cut(s)	52, 491, 560
BstC8I	GCNNGC	2 cut(s)	128, 424
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	3 cut(s)	178, 259, 316
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	190, 391, 542
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	3 cut(s)	187, 388, 539
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BstZ17I	GTATAC	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	14, 220
BtsCI	GGATG	3 cut(s)	178, 259, 316
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	4 cut(s)	417, 496, 556, 602
Cac8I	GCNNGC	2 cut(s)	128, 424
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	218
CviAII	CATG	2 cut(s)	158, 381
CviJI	RGCY	5 cut(s)	14, 130, 220, 426, 479
CviKI_1	RGCY	5 cut(s)	14, 130, 220, 426, 479
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	3 cut(s)	189, 390, 541
DpnII	GATC	3 cut(s)	187, 388, 539
Eco130I	CCWWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	161, 384
FaiI	YATR	5 cut(s)	55, 159, 279, 382, 547
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FatI	CATG	2 cut(s)	157, 380
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	344
FokI	GGATG	3 cut(s)	185, 266, 323
Fsp4HI	GCNGC	1 cut(s)	344
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	1 cut(s)	344
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	14, 220
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	161, 384
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	55, 146
Hpy188I	TCNGA	2 cut(s)	19, 205
Hpy188III	TCNNGA	3 cut(s)	158, 497, 585
Hpy8I	GTNNAC	2 cut(s)	55, 146
HpyCH4III	ACNGT	3 cut(s)	52, 491, 560
HpyCH4V	TGCA	4 cut(s)	24, 120, 209, 545
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	161, 384
HspAI	GCGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	187, 388, 539
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	9 cut(s)	27, 144, 201, 300, 444, 482, 518, 570, 608
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	3 cut(s)	196, 218, 301
MaeI	CTAG	1 cut(s)	423
MalI	GATC	3 cut(s)	189, 390, 541
MboI	GATC	3 cut(s)	187, 388, 539
MboII	GAAGA	7 cut(s)	191, 194, 197, 204, 248, 345, 427
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	5 cut(s)	70, 115, 243, 274, 319
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	6 cut(s)	25, 157, 160, 231, 303, 306
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	1 cut(s)	569
MslI	CAYNNNNRTG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	26
NdeII	GATC	3 cut(s)	187, 388, 539
NheI	GCTAGC	1 cut(s)	422
NlaIII	CATG	2 cut(s)	161, 384
NsiI	ATGCAT	1 cut(s)	211
PagI	TCATGA	1 cut(s)	157
PctI	GAATGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	345
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	569
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	3 cut(s)	187, 388, 539
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	4 cut(s)	373, 428, 481, 514
SfaNI	GCATC	3 cut(s)	196, 218, 301
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	5 cut(s)	70, 115, 243, 274, 319
SspMI	CTAG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	52, 491, 560
TasI	AATT	5 cut(s)	70, 115, 243, 274, 319
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
TscAI	CASTG	4 cut(s)	424, 496, 563, 602
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	7 cut(s)	17, 146, 192, 249, 255, 270, 448
TspRI	CASTG	4 cut(s)	424, 496, 563, 602
XapI	RAATTY	2 cut(s)	243, 319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.