Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Forward (+)

6000991 .. 6004689

Gene Structure 3699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2016 bp

ATGACCAACCTTGTCATTCTCAGAACCATTCTGGGCAATACCCGAAAAGGTTTCCTATTCAGATTCATCGATCGTCGTTTTCTTGTTCCCCTAACATTACTCACACATTCTTTCGCCTCAACTTCGAAACCCGACAGCACTTCCACTCTGCCCAAACACCCAGACTTGTTCTCACTCAACAAAAACATCTCCCATTTGATCCGAACTGGTCGGATTTCCCAAGCTAGGGAAGTGTTTGACAACATGAAGCACCGAAACATCGTAACCTGGAACTCAATGATCTCGGGGTACGTCAAACGTAGGGAGATTGCCAAGGCACGGAAGCTGTTCGACGAAATGCCTGAGAGAGATGTTGTGTCATGGAATGTGATGATCTCCGGGTACGTTTCGTGCCGCGGAGCAAGGTACATTGAGGAGGGGAGGAGTTTGTTTGATCAGATGCCGACGAGGGACTCTGTTTCTTGGAACACAATGATCAGTGGGTATGCCAAGAATGGCAGGATGGGGGAGGCATTGCGGCTTTTCGAGTGTATGCCTGAGAGGACCGTTGTGTCTTGGAATGCAATGGTTACCGGGTTTTTGCAGAATGGTGATGTTGGGAGTGCGGTGGAGTTTTTTGAGAGAATGCCTCAGCGGGATGGGGCTTCGCTTTGTGCACTTGTGTCGGGGATGGTTCATAATGGTGAATTGGATGAAGCTGCGAGGATTGTGGTGCAATGTGGAAATAGGGGTGAGGGTGGGGAGGATTTGGTGAGTGCTTATAATACGTTGATTGCTGGTTATGGCCAGCGAGGAAGGGTGGAAGAAGCTTGGCAGTTTTTTGATCAAATCCCAATTTGTCAGGAGAAGGTGGGAGGGGAGGGTAGGAGGTTTGAGAGAAATGTAGTGTCGTGGAATTCCATGATTATGTGCTATGTGAAAGCAGGAGATGTTGTTTCTGCTAGGGAACTTTTCGACCAGATGATAGAACATGACACATTTTCTTGGAATACCATGATTAGTGGCTATGTGAATATATCAGATATGGAAGAGGCGTCCAAGCTCTTTCGTGAAATGCCAACGCCTGATACACTGTCATGGAATTCCATGATCTTAGGGTATGCCCAGGTTAGTCGTTTAAAACTAGCTCATGAATTTTTTGATAGGATGCCACAAAAGAGTCTTGTCTCTTGGAACTCCATGATAGCAGGATATGAGAAAAATGAGGACTTCATAGGAGCAGTTAAGCTCTTTTCTCAGATGCAACTTGAAGGAGAGAAACCTGATAGACACACTTTATCTTCAGTTCTTAGTGTGTGTACTGGGCTGGTGGATCTGCATCTTGGCATGCAGATTCATCAGCTGGTCACAAAGATAGTCATTGCAGATTTGCCAATAAACAATTCTCTTATAACTATGTATTCAAGATGTGGTGCAATAGAGGAGGCGCACACAATTTTTGATGAGATGAAACGGGAGAAAGATGTGATCTCGTGGAATGCAATGATCGGAGGTTATGCATCTCATGGTTTTGCTGCAGAGGCTCTAGAACTTTTCACTTTGATGAAGAGGTTAAAGGTGCAACCTTCTTATATAACATTTATTGCAGTGTTAAATGCGTGTGCTCATGCTGGATTAGTTGAAGAAGGGCGCAGGCAATTAAAATCCATGATTAGTGACTTTGGTATTGAGCCACGTATTGAACACTATGCATCCCTTGTGGACATAATGGGACGGCATGGACAGCTTGAGGACGCTATGGATGTGATCTATAGCATGCCATTTGAAGCAGATAAGGCTGTGTGGGGAGCATTATTAAGTGCATGTAGAGTGCATAACAATACAGAATTGGCAAAAGTTGCAGCTGAAGCATTAATGAGACTTGAACCTGAAAGCTCAGCTCCATATGTATTGTTATACAATATGTATGCTGATGCCGGACTATGGGATGAAGCAGCAGCGGTGAGACTGCTTATGGATGACAATAAGATAATTAAGCAAAAAGGCTACAGTCGGGTAGATTCTTCCCATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

672

Amino Acids

75.73

Weight (kDa)

6.06

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	85 - 113	8.9e-06	PPR repeat
PPR_2	PF13041	85 - 117	6.5e-09	PPR repeat family
PPR	PF01535	88 - 117	1.6e-08	PPR repeat
PPR_1	PF12854	150 - 178	3.3e-08	PPR repeat
PPR_2	PF13041	151 - 181	2.4e-08	PPR repeat family
PPR	PF01535	153 - 181	5.2e-10	PPR repeat
PPR_2	PF13041	251 - 276	7.7e-06	PPR repeat family
PPR_1	PF12854	253 - 276	6e-06	PPR repeat
PPR_1	PF12854	291 - 321	4.7e-06	PPR repeat
PPR_2	PF13041	293 - 323	1.8e-06	PPR repeat family
PPR	PF01535	296 - 324	2.2e-08	PPR repeat
PPR_2	PF13041	325 - 352	1.1e-06	PPR repeat family
PPR	PF01535	327 - 352	7.2e-07	PPR repeat
PPR_2	PF13041	387 - 433	2.9e-09	PPR repeat family
PPR	PF01535	389 - 418	2.5e-06	PPR repeat
PPR_2	PF13041	487 - 536	9e-10	PPR repeat family
PPR	PF01535	490 - 519	8e-07	PPR repeat
E_motif	PF20431	605 - 666	1.2e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	762, 1391
AasI	GACNNNNNNGTC	1 cut(s)	550
AccII	CGCG	1 cut(s)	396
AciI	CCGC	6 cut(s)	394, 396, 517, 605, 634, 1940
AclWI	GGATC	2 cut(s)	193, 1320
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	3 cut(s)	895, 1081, 1133
AcuI	CTGAAG	2 cut(s)	1266, 1866
AcyI	GRCGYC	1 cut(s)	1034
AfaI	GTAC	4 cut(s)	290, 383, 407, 1300
AfiI	CCNNNNNNNGG	4 cut(s)	225, 226, 318, 1923
AgsI	TTSAA	6 cut(s)	1250, 1404, 1622, 1682, 1766, 1865
AjnI	CCWGG	2 cut(s)	266, 1104
AjuI	GAANNNNNNNTTGG	2 cut(s)	1366, 1398
Alw21I	GWGCWC	2 cut(s)	658, 1606
Alw26I	GTCTC	3 cut(s)	1171, 1852, 1939
Alw44I	GTGCAC	1 cut(s)	654
AlwI	GGATC	2 cut(s)	193, 1320
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	1 cut(s)	784
ApaLI	GTGCAC	1 cut(s)	654
ApeKI	GCWGC	5 cut(s)	698, 1514, 1841, 1934, 1937
ApoI	RAATTY	3 cut(s)	895, 1081, 1133
AseI	ATTAAT	1 cut(s)	1853
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	1429, 1632
AspS9I	GGNCC	1 cut(s)	543
AsuC2I	CCSGG	2 cut(s)	379, 574
AsuHPI	GGTGA	5 cut(s)	602, 695, 743, 763, 1954
AsuII	TTCGAA	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	543
BaeGI	GKGCMC	1 cut(s)	658
BalI	TGGCCA	1 cut(s)	786
BauI	CACGAG	1 cut(s)	1471
Bbv12I	GWGCWC	2 cut(s)	658, 1606
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	5 cut(s)	685, 1501, 1853, 1946, 1949
BccI	CCATC	3 cut(s)	496, 632, 664
BceAI	ACGGC	1 cut(s)	1730
BcgI	CGANNNNNNTGC	2 cut(s)	645, 679
BciT130I	CCWGG	2 cut(s)	268, 1106
BclI	TGATCA	3 cut(s)	433, 474, 823
BcnI	CCSGG	2 cut(s)	379, 574
BcoDI	GTCTC	3 cut(s)	1171, 1852, 1939
BfaI	CTAG	4 cut(s)	225, 942, 1124, 1526
BfmI	CTRYAG	3 cut(s)	1515, 1750, 1987
BisI	GCNGC	7 cut(s)	394, 518, 699, 1515, 1842, 1935, 1938
BlpI	GCTNAGC	1 cut(s)	1876
BlsI	GCNGC	7 cut(s)	395, 519, 700, 1516, 1843, 1936, 1939
Bme1390I	CCNGG	4 cut(s)	268, 379, 574, 1106
Bme18I	GGWCC	1 cut(s)	543
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	543
BmrFI	CCNGG	4 cut(s)	268, 379, 574, 1106
BmrI	ACTGGG	1 cut(s)	1311
BmsI	GCATC	7 cut(s)	429, 1137, 1230, 1327, 1508, 1700, 1903
BmuI	ACTGGG	1 cut(s)	1311
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
Bpu10I	CCTNAGC	1 cut(s)	630
Bpu1102I	GCTNAGC	1 cut(s)	1876
Bpu14I	TTCGAA	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	1748
BpuMI	CCSGG	2 cut(s)	379, 574
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	1676
BsaBI	GATNNNNATC	1 cut(s)	1317
BsaHI	GRCGYC	1 cut(s)	1034
BsaJI	CCNNGG	3 cut(s)	312, 394, 1104
BsaXI	ACNNNNNCTCC	2 cut(s)	918, 948
Bsc4I	CCNNNNNNNGG	4 cut(s)	225, 226, 318, 1923
Bse1I	ACTGG	2 cut(s)	211, 1306
Bse3DI	GCAATG	6 cut(s)	512, 570, 722, 1359, 1488, 2008
Bse8I	GATNNNNATC	1 cut(s)	1317
BseBI	CCWGG	2 cut(s)	268, 1106
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	312, 394, 1104
BseGI	GGATG	9 cut(s)	507, 643, 675, 697, 1152, 1691, 1747, 1933, 1963
BseJI	GATNNNNATC	1 cut(s)	1317
BseLI	CCNNNNNNNGG	4 cut(s)	225, 226, 318, 1923
BseMI	GCAATG	6 cut(s)	512, 570, 722, 1359, 1488, 2008
BseMII	CTCAG	6 cut(s)	34, 333, 528, 644, 1250, 1890
BseNI	ACTGG	2 cut(s)	211, 1306
BseRI	GAGGAG	3 cut(s)	428, 436, 1436
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	5 cut(s)	685, 1501, 1853, 1946, 1949
Bsh1236I	CGCG	1 cut(s)	396
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	786
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	2 cut(s)	658, 1606
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	3 cut(s)	378, 573, 1917
BslFI	GGGAC	2 cut(s)	464, 1725
BslI	CCNNNNNNNGG	4 cut(s)	225, 226, 318, 1923
BsmAI	GTCTC	3 cut(s)	1171, 1852, 1939
BsmFI	GGGAC	2 cut(s)	464, 1725
BsmI	GAATGC	3 cut(s)	565, 630, 1483
BsnI	GGCC	1 cut(s)	786
BsoBI	CYCGRG	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	658, 1606
Bsp1720I	GCTNAGC	1 cut(s)	1876
BspACI	CCGC	6 cut(s)	394, 396, 517, 605, 634, 1940
BspANI	GGCC	1 cut(s)	786
BspCNI	CTCAG	6 cut(s)	33, 334, 529, 643, 1249, 1889
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	1129
BspMAI	CTGCAG	1 cut(s)	1519
BspPI	GGATC	2 cut(s)	193, 1320
BspT104I	TTCGAA	1 cut(s)	125
BsrDI	GCAATG	6 cut(s)	512, 570, 722, 1359, 1488, 2008
BsrI	ACTGG	2 cut(s)	211, 1306
BssECI	CCNNGG	3 cut(s)	312, 394, 1104
BssNI	GRCGYC	1 cut(s)	1034
BssSI	CACGAG	1 cut(s)	1471
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	1471
Bst2UI	CCWGG	2 cut(s)	268, 1106
Bst4CI	ACNGT	3 cut(s)	547, 1074, 1991
Bst6I	CTCTTC	2 cut(s)	1023, 1541
BstACI	GRCGYC	1 cut(s)	1034
BstAPI	GCANNNNNTGC	1 cut(s)	1838
BstBAI	YACGTR	1 cut(s)	1676
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	4 cut(s)	788, 1328, 1634, 1757
BstDEI	CTNAG	8 cut(s)	20, 342, 537, 630, 1093, 1236, 1289, 1876
BstDSI	CCRYGG	1 cut(s)	394
BstEII	GGTNACC	1 cut(s)	568
BstF5I	GGATG	9 cut(s)	507, 643, 675, 697, 1152, 1691, 1747, 1933, 1963
BstFNI	CGCG	1 cut(s)	396
BstHHI	GCGC	2 cut(s)	1429, 1632
BstMAI	GTCTC	3 cut(s)	1171, 1852, 1939
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	5 cut(s)	1520, 1723, 1775, 1838, 1847
BstNI	CCWGG	2 cut(s)	268, 1106
BstNSI	RCATGY	3 cut(s)	1330, 1759, 1806
BstPI	GGTNACC	1 cut(s)	568
BstSCI	CCNGG	4 cut(s)	266, 377, 572, 1104
BstSFI	CTRYAG	3 cut(s)	1515, 1750, 1987
BstSLI	GKGCMC	1 cut(s)	658
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	5 cut(s)	685, 1501, 1853, 1946, 1949
BstX2I	RGATCY	1 cut(s)	1312
BstYI	RGATCY	1 cut(s)	1312
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	786
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	9 cut(s)	507, 643, 675, 697, 1152, 1691, 1747, 1933, 1963
BtsI	GCAGTG	1 cut(s)	1593
BtsIMutI	CAGTG	3 cut(s)	484, 1070, 1593
Cac8I	GCNNGC	4 cut(s)	788, 1328, 1634, 1757
CciI	TCATGA	1 cut(s)	1129
CfoI	GCGC	2 cut(s)	1429, 1632
Cfr13I	GGNCC	1 cut(s)	543
Cfr42I	CCGCGG	1 cut(s)	397
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	2 cut(s)	1023, 1742
Csp6I	GTAC	4 cut(s)	289, 382, 406, 1299
CviQI	GTAC	4 cut(s)	289, 382, 406, 1299
DdeI	CTNAG	8 cut(s)	20, 342, 537, 630, 1093, 1236, 1289, 1876
DraI	TTTAAA	1 cut(s)	1119
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	2 cut(s)	1023, 1541
EarI	CTCTTC	2 cut(s)	1023, 1541
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	543
Eco57I	CTGAAG	2 cut(s)	1266, 1866
Eco88I	CYCGRG	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	568
EcoO65I	GGTNACC	1 cut(s)	568
EcoRI	GAATTC	2 cut(s)	895, 1081
EcoRII	CCWGG	2 cut(s)	266, 1104
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	2 cut(s)	1501, 1693
ErhI	CCWWGG	1 cut(s)	312
FaqI	GGGAC	2 cut(s)	464, 1725
FauI	CCCGC	1 cut(s)	627
FauNDI	CATATG	1 cut(s)	1885
FbaI	TGATCA	3 cut(s)	433, 474, 823
Fnu4HI	GCNGC	7 cut(s)	394, 518, 699, 1515, 1842, 1935, 1938
FokI	GGATG	9 cut(s)	514, 650, 682, 704, 1159, 1678, 1754, 1940, 1970
Fsp4HI	GCNGC	7 cut(s)	394, 518, 699, 1515, 1842, 1935, 1938
FspBI	CTAG	4 cut(s)	225, 942, 1124, 1526
GlaI	GCGC	2 cut(s)	1428, 1631
GluI	GCNGC	7 cut(s)	394, 518, 699, 1515, 1842, 1935, 1938
HaeIII	GGCC	1 cut(s)	786
HapII	CCGG	3 cut(s)	378, 573, 1917
HgaI	GACGC	2 cut(s)	1023, 1742
HhaI	GCGC	2 cut(s)	1429, 1632
Hin1I	GRCGYC	1 cut(s)	1034
Hin6I	GCGC	2 cut(s)	1427, 1630
HinP1I	GCGC	2 cut(s)	1427, 1630
HindIII	AAGCTT	1 cut(s)	807
HinfI	GANTC	5 cut(s)	63, 452, 1159, 1333, 2000
HpaII	CCGG	3 cut(s)	378, 573, 1917
HphI	GGTGA	5 cut(s)	602, 695, 743, 763, 1954
Hpy166II	GTNNAC	3 cut(s)	656, 1299, 1702
Hpy188I	TCNGA	8 cut(s)	23, 62, 203, 213, 438, 1021, 1239, 1490
Hpy188III	TCNNGA	5 cut(s)	842, 1049, 1130, 1404, 1526
Hpy8I	GTNNAC	3 cut(s)	656, 1299, 1702
Hpy99I	CGWCG	3 cut(s)	78, 335, 448
HpyAV	CCTTC	5 cut(s)	789, 841, 1244, 1575, 1619
HpyCH4III	ACNGT	3 cut(s)	547, 1074, 1991
HpyCH4IV	ACGT	5 cut(s)	291, 298, 384, 767, 1675
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1520, 1723, 1775, 1838, 1847
HpyF3I	CTNAG	8 cut(s)	20, 342, 537, 630, 1093, 1236, 1289, 1876
HpySE526I	ACGT	5 cut(s)	291, 298, 384, 767, 1675
Hsp92I	GRCGYC	1 cut(s)	1034
HspAI	GCGC	2 cut(s)	1427, 1630
Ksp22I	TGATCA	3 cut(s)	433, 474, 823
KspI	CCGCGG	1 cut(s)	397
LmnI	GCTCC	4 cut(s)	398, 1217, 1787, 1885
Lsp1109I	GCAGC	5 cut(s)	685, 1501, 1853, 1946, 1949
LweI	GCATC	7 cut(s)	429, 1137, 1230, 1327, 1508, 1700, 1903
MaeI	CTAG	4 cut(s)	225, 942, 1124, 1526
MaeII	ACGT	5 cut(s)	291, 298, 384, 767, 1675
MaeIII	GTNAC	4 cut(s)	262, 568, 1345, 1655
MboII	GAAGA	6 cut(s)	815, 1040, 1272, 1558, 1634, 1995
MflI	RGATCY	1 cut(s)	1312
MhlI	GDGCHC	2 cut(s)	658, 1606
MlsI	TGGCCA	1 cut(s)	786
MluNI	TGGCCA	1 cut(s)	786
MlyI	GAGTC	2 cut(s)	446, 1168
MmeI	TCCRAC	1 cut(s)	191
Mox20I	TGGCCA	1 cut(s)	786
Mph1103I	ATGCAT	2 cut(s)	1501, 1693
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	8 cut(s)	1118, 1224, 1553, 1592, 1640, 1796, 1853, 1974
MslI	CAYNNNNRTG	4 cut(s)	681, 905, 1075, 1541
Msp20I	TGGCCA	1 cut(s)	786
MspA1I	CMGCKG	5 cut(s)	396, 634, 1342, 1844, 1940
MspI	CCGG	3 cut(s)	378, 573, 1917
MspR9I	CCNGG	4 cut(s)	268, 379, 574, 1106
Mva1269I	GAATGC	3 cut(s)	565, 630, 1483
MvaI	CCWGG	2 cut(s)	268, 1106
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	5 cut(s)	1520, 1723, 1775, 1838, 1847
NciI	CCSGG	2 cut(s)	379, 574
NdeI	CATATG	1 cut(s)	1885
NmuCI	GTSAC	2 cut(s)	1345, 1655
NsiI	ATGCAT	2 cut(s)	1501, 1693
NspI	RCATGY	3 cut(s)	1330, 1759, 1806
NspV	TTCGAA	1 cut(s)	125
PaeI	GCATGC	2 cut(s)	1330, 1759
PagI	TCATGA	1 cut(s)	1129
PctI	GAATGC	3 cut(s)	565, 630, 1483
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	63, 1333, 2000
PkrI	GCNGC	7 cut(s)	395, 519, 700, 1516, 1843, 1936, 1939
Ple19I	CGATCG	1 cut(s)	73
PleI	GAGTC	2 cut(s)	446, 1167
PpsI	GAGTC	2 cut(s)	446, 1167
Ppu21I	YACGTR	1 cut(s)	1676
PshBI	ATTAAT	1 cut(s)	1853
PsiI	TTATAA	2 cut(s)	762, 1391
Psp6I	CCWGG	2 cut(s)	266, 1104
PspEI	GGTNACC	1 cut(s)	568
PspGI	CCWGG	2 cut(s)	266, 1104
PspPI	GGNCC	1 cut(s)	543
PstI	CTGCAG	1 cut(s)	1519
PsuI	RGATCY	1 cut(s)	1312
PvuI	CGATCG	1 cut(s)	73
PvuII	CAGCTG	2 cut(s)	1342, 1844
RsaI	GTAC	4 cut(s)	290, 383, 407, 1300
RsaNI	GTAC	4 cut(s)	289, 382, 406, 1299
RseI	CAYNNNNRTG	4 cut(s)	681, 905, 1075, 1541
SacII	CCGCGG	1 cut(s)	397
SaqAI	TTAA	8 cut(s)	1118, 1224, 1553, 1592, 1640, 1796, 1853, 1974
SatI	GCNGC	7 cut(s)	394, 518, 699, 1515, 1842, 1935, 1938
Sau96I	GGNCC	1 cut(s)	543
SchI	GAGTC	2 cut(s)	446, 1168
ScrFI	CCNGG	4 cut(s)	268, 379, 574, 1106
SduI	GDGCHC	2 cut(s)	658, 1606
SfaNI	GCATC	7 cut(s)	429, 1137, 1230, 1327, 1508, 1700, 1903
SfcI	CTRYAG	3 cut(s)	1515, 1750, 1987
Sfr303I	CCGCGG	1 cut(s)	397
SfuI	TTCGAA	1 cut(s)	125
SgrBI	CCGCGG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	543
SmiMI	CAYNNNNRTG	4 cut(s)	681, 905, 1075, 1541
SmlI	CTYRAG	1 cut(s)	1727
SmoI	CTYRAG	1 cut(s)	1727
SphI	GCATGC	2 cut(s)	1330, 1759
SsiI	CCGC	6 cut(s)	394, 396, 517, 605, 634, 1940
SspMI	CTAG	4 cut(s)	225, 942, 1124, 1526
StyD4I	CCNGG	4 cut(s)	266, 377, 572, 1104
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	547, 1074, 1991
TaiI	ACGT	5 cut(s)	294, 301, 387, 770, 1678
TaqI	TCGA	5 cut(s)	69, 125, 330, 525, 954
TatI	WGTACW	1 cut(s)	1298
TauI	GCSGC	2 cut(s)	396, 520
TfiI	GAWTC	3 cut(s)	63, 1333, 2000
Tru1I	TTAA	8 cut(s)	1118, 1224, 1553, 1592, 1640, 1796, 1853, 1974
Tru9I	TTAA	8 cut(s)	1118, 1224, 1553, 1592, 1640, 1796, 1853, 1974
TscAI	CASTG	3 cut(s)	484, 1077, 1593
TseFI	GTSAC	2 cut(s)	1345, 1655
TseI	GCWGC	5 cut(s)	698, 1514, 1841, 1934, 1937
Tsp45I	GTSAC	2 cut(s)	1345, 1655
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	3 cut(s)	484, 1077, 1593
VneI	GTGCAC	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	543
VspI	ATTAAT	1 cut(s)	1853
XapI	RAATTY	3 cut(s)	895, 1081, 1133
XbaI	TCTAGA	1 cut(s)	1525
XceI	RCATGY	3 cut(s)	1330, 1759, 1806
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	4 cut(s)	225, 942, 1124, 1526
Zsp2I	ATGCAT	2 cut(s)	1501, 1693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.