Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002080.1

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Forward (+)

6005 .. 6481

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002080.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgccccgagctcgtattattcttcgtctactcaccatcccattacccgataatcacgcatccccacagcactcttgttttgcctcaacttcaaaacccggcagtcatgcgaacgacgtagaccttttttcactgaacagaaggatctcccatttgatccgaactggtcagatagagcaagccagggaagcctttgacaagatgaagcgacggaatatcgttacttggaattcaatgataaccgggtatgtgaaacgccgagagatggccaaggcccggaagctgttcgacgcaatgcctgacagagatgttgtgtcctggaatttgatgatatccgggtacgtttcgtgccgcggaagtcttcggtatgttgaggaggggaggactttgtttgatcagatgccggtgagggactgtgtttcttggaacacaatgatcagtgggtacgccaagaatgggaggatgggggaggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

158

Amino Acids

18.12

Weight (kDa)

10.08

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	28, 120
AccII	CGCG	1 cut(s)	354
AciI	CCGC	2 cut(s)	352, 354
AclWI	GGATC	2 cut(s)	151, 152
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	229, 322
AfaI	GTAC	2 cut(s)	341, 446
AfiI	CCNNNNNNNGG	3 cut(s)	265, 276, 456
AgsI	TTSAA	2 cut(s)	93, 234
AjnI	CCWGG	2 cut(s)	182, 317
AluBI	AGCT	2 cut(s)	11, 283
AluI	AGCT	2 cut(s)	11, 283
Alw21I	GWGCWC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	151, 152
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	2 cut(s)	267, 273
ApoI	RAATTY	2 cut(s)	229, 322
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	4 cut(s)	99, 244, 277, 337
AsuHPI	GGTGA	2 cut(s)	25, 418
AvaI	CYCGRG	1 cut(s)	6
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	3 cut(s)	44, 259, 457
BciT130I	CCWGG	2 cut(s)	184, 319
BclI	TGATCA	2 cut(s)	394, 435
BcnI	CCSGG	4 cut(s)	99, 244, 277, 337
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
Bme1390I	CCNGG	6 cut(s)	99, 184, 244, 277, 319, 337
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	274
BmrFI	CCNGG	6 cut(s)	99, 184, 244, 277, 319, 337
BmsI	GCATC	2 cut(s)	68, 390
BpiI	GAAGAC	1 cut(s)	353
BpuMI	CCSGG	4 cut(s)	99, 244, 277, 337
BsaJI	CCNNGG	3 cut(s)	183, 270, 352
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 276, 456
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	184, 319
BseDI	CCNNGG	3 cut(s)	183, 270, 352
BseGI	GGATG	3 cut(s)	36, 59, 468
BseLI	CCNNNNNNNGG	3 cut(s)	265, 276, 456
BseMI	GCAATG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	269, 275
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	5 cut(s)	99, 243, 277, 336, 404
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	3 cut(s)	265, 276, 456
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	269, 275
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	144, 156, 394, 435
BspACI	CCGC	2 cut(s)	352, 354
BspANI	GGCC	2 cut(s)	269, 275
BspFNI	CGCG	1 cut(s)	354
BspPI	GGATC	2 cut(s)	151, 152
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	3 cut(s)	183, 270, 352
BssMI	GATC	4 cut(s)	144, 156, 394, 435
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	184, 319
Bst4CI	ACNGT	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	3 cut(s)	36, 59, 468
BstFNI	CGCG	1 cut(s)	354
BstKTI	GATC	4 cut(s)	147, 159, 397, 438
BstMBI	GATC	4 cut(s)	144, 156, 394, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	2 cut(s)	184, 319
BstSCI	CCNGG	6 cut(s)	97, 182, 242, 275, 317, 335
BstUI	CGCG	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	269, 275
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	36, 59, 468
BtsIMutI	CAGTG	2 cut(s)	131, 445
Cac8I	GCNNGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	274
Cfr42I	CCGCGG	1 cut(s)	355
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	340, 445
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	6 cut(s)	11, 182, 191, 269, 275, 283
CviKI_1	RGCY	6 cut(s)	11, 182, 191, 269, 275, 283
CviQI	GTAC	2 cut(s)	340, 445
DpnI	GATC	4 cut(s)	146, 158, 396, 437
DpnII	GATC	4 cut(s)	144, 156, 394, 435
EaeI	YGGCCR	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	182, 317
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	110
FaiI	YATR	4 cut(s)	108, 249, 369, 475
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	1 cut(s)	106
FbaI	TGATCA	2 cut(s)	394, 435
FblI	GTMKAC	2 cut(s)	28, 120
Fnu4HI	GCNGC	1 cut(s)	352
FokI	GGATG	2 cut(s)	23, 46
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	352
GluI	GCNGC	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	269, 275
HapII	CCGG	5 cut(s)	99, 243, 277, 336, 404
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	110
HpaII	CCGG	5 cut(s)	99, 243, 277, 336, 404
HphI	GGTGA	2 cut(s)	25, 418
Hpy166II	GTNNAC	2 cut(s)	29, 121
Hpy188I	TCNGA	3 cut(s)	161, 171, 399
Hpy8I	GTNNAC	2 cut(s)	29, 121
Hpy99I	CGWCG	3 cut(s)	119, 213, 293
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	2 cut(s)	117, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpySE526I	ACGT	2 cut(s)	117, 342
Hsp92II	CATG	1 cut(s)	110
Ksp22I	TGATCA	2 cut(s)	394, 435
KspI	CCGCGG	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	144, 156, 394, 435
LweI	GCATC	2 cut(s)	68, 390
MaeII	ACGT	2 cut(s)	117, 342
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	4 cut(s)	146, 158, 396, 437
MboI	GATC	4 cut(s)	144, 156, 394, 435
MboII	GAAGA	2 cut(s)	14, 353
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	2 cut(s)	229, 322
MluNI	TGGCCA	1 cut(s)	269
MnlI	CCTC	7 cut(s)	94, 367, 370, 375, 402, 453, 463
Mox20I	TGGCCA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	5 cut(s)	99, 243, 277, 336, 404
MspR9I	CCNGG	6 cut(s)	99, 184, 244, 277, 319, 337
MvaI	CCWGG	2 cut(s)	184, 319
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	188
NciI	CCSGG	4 cut(s)	99, 244, 277, 337
NdeII	GATC	4 cut(s)	144, 156, 394, 435
NlaIII	CATG	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	182, 317
PspGI	CCWGG	2 cut(s)	182, 317
PspPI	GGNCC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	144
RsaI	GTAC	2 cut(s)	341, 446
RsaNI	GTAC	2 cut(s)	340, 445
SacI	GAGCTC	1 cut(s)	13
SacII	CCGCGG	1 cut(s)	355
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	4 cut(s)	144, 156, 394, 435
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	6 cut(s)	99, 184, 244, 277, 319, 337
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	5 cut(s)	13, 120, 126, 285, 345
SfaNI	GCATC	2 cut(s)	68, 390
Sfr303I	CCGCGG	1 cut(s)	355
SgrBI	CCGCGG	1 cut(s)	355
Sse9I	AATT	2 cut(s)	229, 322
SsiI	CCGC	2 cut(s)	352, 354
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	6 cut(s)	97, 182, 242, 275, 317, 335
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	2 cut(s)	120, 345
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	229, 322
TauI	GCSGC	1 cut(s)	354
TscAI	CASTG	2 cut(s)	138, 445
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	2 cut(s)	138, 445
XapI	RAATTY	2 cut(s)	229, 322
XmiI	GTMKAC	2 cut(s)	28, 120
XmnI	GAANNNNTTC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.