Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037609.1

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Reverse (-)

9799 .. 10554

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037609.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgatgattctgggtaatgcaaatggtttcatatataaactcatgccccgagctcgtattattcttcgtctactcaccatcccattacccaataatcacgcatccccacggcactcttgttttgcctcaacttcaaaacccggcagtcatgccgaagacgtagaccttttttcactgaacagaaggatctcccatttgatccgagctggtcagatagagcaagccagggaagcctttgacaagatgaagcaacggaatatcgttacttggaattcaatgataaccgggtatgtgaaacgccgagagatggccaaggcccggaagctgttcgacgaaatgcctgacagagatgttgtgtcctggaatttgatgatatccgggtacgtttcgtgccgcggaagtcgtcggtatgttgaggagggcaggactttgtttgatcagatgccggtgagggactgtgtttcttggaacacaatgatcagtgagtacgccaagaatgggaggatgggggaggcattgcggcttttcgatgccatgccgcagaggagtgttgtttcttggaatgcaatggttaccgggtttctacagaatggcgatgttgcgcgtgcaattgagtttttcgagagaatgccgcagagggatggggcttcttttagtgccctcgtgtcggggcttattcagaatggtgagctggatgaagctgcgaggattgttggcgaatgtgggaagagggatgaggagggggcccagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

251

Amino Acids

28.47

Weight (kDa)

9.29

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	70, 162
AccII	CGCG	2 cut(s)	396, 604
AciI	CCGC	5 cut(s)	394, 396, 520, 539, 632
AclWI	GGATC	2 cut(s)	193, 194
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	271, 364
AfaI	GTAC	2 cut(s)	383, 488
AfiI	CCNNNNNNNGG	4 cut(s)	307, 318, 498, 667
AgsI	TTSAA	2 cut(s)	135, 276
AjnI	CCWGG	2 cut(s)	224, 359
AluBI	AGCT	5 cut(s)	53, 206, 325, 691, 701
AluI	AGCT	5 cut(s)	53, 206, 325, 691, 701
Alw21I	GWGCWC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	193, 194
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	3 cut(s)	309, 315, 744
ApaI	GGGCCC	1 cut(s)	748
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	2 cut(s)	271, 364
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	3 cut(s)	316, 744, 745
AsuC2I	CCSGG	5 cut(s)	141, 286, 319, 379, 577
AsuHPI	GGTGA	3 cut(s)	67, 460, 698
AvaI	CYCGRG	1 cut(s)	48
BaeGI	GKGCMC	2 cut(s)	661, 748
BalI	TGGCCA	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	55, 748
BauI	CACGAG	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	4 cut(s)	86, 301, 499, 635
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	226, 361
BclI	TGATCA	2 cut(s)	436, 477
BcnI	CCSGG	5 cut(s)	141, 286, 319, 379, 577
BfmI	CTRYAG	1 cut(s)	584
BisI	GCNGC	5 cut(s)	394, 521, 539, 632, 702
BlsI	GCNGC	5 cut(s)	395, 522, 540, 633, 703
Bme1390I	CCNGG	7 cut(s)	141, 226, 286, 319, 361, 379, 577
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	3 cut(s)	316, 744, 745
BmiI	GGNNCC	2 cut(s)	745, 746
BmrFI	CCNGG	7 cut(s)	141, 226, 286, 319, 361, 379, 577
BmsI	GCATC	3 cut(s)	110, 432, 520
BpiI	GAAGAC	1 cut(s)	162
BpuMI	CCSGG	5 cut(s)	141, 286, 319, 379, 577
BsaJI	CCNNGG	4 cut(s)	107, 225, 312, 394
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 318, 498, 667
Bse118I	RCCGGY	1 cut(s)	445
Bse3DI	GCAATG	2 cut(s)	515, 573
BseBI	CCWGG	2 cut(s)	226, 361
BseDI	CCNNGG	4 cut(s)	107, 225, 312, 394
BseGI	GGATG	6 cut(s)	78, 101, 510, 646, 700, 739
BseLI	CCNNNNNNNGG	4 cut(s)	307, 318, 498, 667
BseMI	GCAATG	2 cut(s)	515, 573
BseRI	GAGGAG	3 cut(s)	431, 559, 752
BseSI	GKGCMC	2 cut(s)	661, 748
BseXI	GCAGC	1 cut(s)	688
Bsh1236I	CGCG	2 cut(s)	396, 604
BshFI	GGCC	3 cut(s)	311, 317, 746
BsiHKAI	GWGCWC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	6 cut(s)	141, 285, 319, 378, 446, 576
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	4 cut(s)	307, 318, 498, 667
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	2 cut(s)	568, 633
BsnI	GGCC	3 cut(s)	311, 317, 746
BsoBI	CYCGRG	1 cut(s)	48
Bsp120I	GGGCCC	1 cut(s)	744
Bsp1286I	GDGCHC	3 cut(s)	55, 661, 748
Bsp143I	GATC	4 cut(s)	186, 198, 436, 477
BspACI	CCGC	5 cut(s)	394, 396, 520, 539, 632
BspANI	GGCC	3 cut(s)	311, 317, 746
BspFNI	CGCG	2 cut(s)	396, 604
BspLI	GGNNCC	2 cut(s)	745, 746
BspPI	GGATC	2 cut(s)	193, 194
BsrDI	GCAATG	2 cut(s)	515, 573
BsrFI	RCCGGY	1 cut(s)	445
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	4 cut(s)	107, 225, 312, 394
BssMI	GATC	4 cut(s)	186, 198, 436, 477
BssSI	CACGAG	1 cut(s)	662
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	662
Bst2UI	CCWGG	2 cut(s)	226, 361
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	222, 606
BstDSI	CCRYGG	2 cut(s)	107, 394
BstEII	GGTNACC	1 cut(s)	571
BstF5I	GGATG	6 cut(s)	78, 101, 510, 646, 700, 739
BstFNI	CGCG	2 cut(s)	396, 604
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	4 cut(s)	189, 201, 439, 480
BstMBI	GATC	4 cut(s)	186, 198, 436, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	2 cut(s)	226, 361
BstPI	GGTNACC	1 cut(s)	571
BstSCI	CCNGG	7 cut(s)	139, 224, 284, 317, 359, 377, 575
BstSFI	CTRYAG	1 cut(s)	584
BstSLI	GKGCMC	2 cut(s)	661, 748
BstUI	CGCG	2 cut(s)	396, 604
BstV1I	GCAGC	1 cut(s)	688
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	3 cut(s)	311, 317, 746
BtgI	CCRYGG	2 cut(s)	107, 394
BtgZI	GCGATG	1 cut(s)	609
BtsCI	GGATG	6 cut(s)	78, 101, 510, 646, 700, 739
BtsIMutI	CAGTG	2 cut(s)	173, 487
Cac8I	GCNNGC	2 cut(s)	222, 606
CfoI	GCGC	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	3 cut(s)	316, 744, 745
Cfr42I	CCGCGG	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	382, 487
CviAII	CATG	3 cut(s)	43, 149, 535
CviQI	GTAC	2 cut(s)	382, 487
DpnI	GATC	4 cut(s)	188, 200, 438, 479
DpnII	GATC	4 cut(s)	186, 198, 436, 477
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	2 cut(s)	55, 748
Eco32I	GATATC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	48
Eco91I	GGTNACC	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	744
EcoO65I	GGTNACC	1 cut(s)	571
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	224, 359
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	2 cut(s)	55, 748
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	3 cut(s)	46, 152, 538
FaiI	YATR	8 cut(s)	32, 34, 36, 44, 150, 291, 411, 536
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	3 cut(s)	42, 148, 534
FbaI	TGATCA	2 cut(s)	436, 477
FblI	GTMKAC	2 cut(s)	70, 162
Fnu4HI	GCNGC	5 cut(s)	394, 521, 539, 632, 702
FokI	GGATG	6 cut(s)	65, 88, 517, 653, 707, 746
FriOI	GRGCYC	2 cut(s)	55, 748
Fsp4HI	GCNGC	5 cut(s)	394, 521, 539, 632, 702
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	5 cut(s)	394, 521, 539, 632, 702
HaeIII	GGCC	3 cut(s)	311, 317, 746
HapII	CCGG	6 cut(s)	141, 285, 319, 378, 446, 576
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	3 cut(s)	46, 152, 538
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	6 cut(s)	141, 285, 319, 378, 446, 576
HphI	GGTGA	3 cut(s)	67, 460, 698
Hpy166II	GTNNAC	2 cut(s)	71, 163
Hpy188I	TCNGA	4 cut(s)	203, 213, 441, 681
Hpy188III	TCNNGA	1 cut(s)	622
Hpy8I	GTNNAC	2 cut(s)	71, 163
Hpy99I	CGWCG	2 cut(s)	335, 408
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	2 cut(s)	159, 384
HpyCH4V	TGCA	3 cut(s)	20, 566, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	159, 384
Hsp92II	CATG	3 cut(s)	46, 152, 538
HspAI	GCGC	1 cut(s)	602
Ksp22I	TGATCA	2 cut(s)	436, 477
KspI	CCGCGG	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	186, 198, 436, 477
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	3 cut(s)	110, 432, 520
MaeII	ACGT	2 cut(s)	159, 384
MaeIII	GTNAC	2 cut(s)	262, 571
MalI	GATC	4 cut(s)	188, 200, 438, 479
MboI	GATC	4 cut(s)	186, 198, 436, 477
MboII	GAAGA	3 cut(s)	56, 167, 739
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	3 cut(s)	55, 661, 748
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	3 cut(s)	271, 364, 609
MluNI	TGGCCA	1 cut(s)	311
Mox20I	TGGCCA	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	1 cut(s)	754
Msp20I	TGGCCA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	6 cut(s)	141, 285, 319, 378, 446, 576
MspR9I	CCNGG	7 cut(s)	141, 226, 286, 319, 361, 379, 577
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	2 cut(s)	568, 633
MvaI	CCWGG	2 cut(s)	226, 361
MvnI	CGCG	2 cut(s)	396, 604
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	5 cut(s)	141, 286, 319, 379, 577
NdeII	GATC	4 cut(s)	186, 198, 436, 477
NlaIII	CATG	3 cut(s)	46, 152, 538
NlaIV	GGNNCC	2 cut(s)	745, 746
NmeAIII	GCCGAG	1 cut(s)	326
PctI	GAATGC	2 cut(s)	568, 633
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	5 cut(s)	395, 522, 540, 633, 703
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	224, 359
PspEI	GGTNACC	1 cut(s)	571
PspGI	CCWGG	2 cut(s)	224, 359
PspN4I	GGNNCC	2 cut(s)	745, 746
PspOMI	GGGCCC	1 cut(s)	744
PspPI	GGNCC	3 cut(s)	316, 744, 745
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	2 cut(s)	383, 488
RsaNI	GTAC	2 cut(s)	382, 487
SacI	GAGCTC	1 cut(s)	55
SacII	CCGCGG	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	754
SatI	GCNGC	5 cut(s)	394, 521, 539, 632, 702
Sau3AI	GATC	4 cut(s)	186, 198, 436, 477
Sau96I	GGNCC	3 cut(s)	316, 744, 745
ScrFI	CCNGG	7 cut(s)	141, 226, 286, 319, 361, 379, 577
SduI	GDGCHC	3 cut(s)	55, 661, 748
SetI	ASST	8 cut(s)	55, 162, 168, 208, 327, 387, 693, 703
SfaNI	GCATC	3 cut(s)	110, 432, 520
SfcI	CTRYAG	1 cut(s)	584
Sfr303I	CCGCGG	1 cut(s)	397
SgrBI	CCGCGG	1 cut(s)	397
Sse9I	AATT	3 cut(s)	271, 364, 609
SsiI	CCGC	5 cut(s)	394, 396, 520, 539, 632
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	7 cut(s)	139, 224, 284, 317, 359, 377, 575
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	2 cut(s)	162, 387
TaqI	TCGA	3 cut(s)	330, 528, 621
TasI	AATT	3 cut(s)	271, 364, 609
TauI	GCSGC	4 cut(s)	396, 523, 541, 634
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	754
Tru9I	TTAA	1 cut(s)	754
TscAI	CASTG	2 cut(s)	180, 487
TseI	GCWGC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	19, 260, 711
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	2 cut(s)	180, 487
XapI	RAATTY	2 cut(s)	271, 364
XmiI	GTMKAC	2 cut(s)	70, 162
XmnI	GAANNNNTTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.