Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Forward (+)

15040283 .. 15042236

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATTAGTGACTTTGGTATTGAGCCACGTATTGAACACTATGCATCCCTTGTGGACATAATTGGTTGGCATGGACAGCTTGAGGAGGCTATGGATTTGATCAATAGCATGTCATTTGAATTTGAAGCAGATAAGCCTGTGTGGGGAGCATTGTTAGGTGCCTGTAGAGTGCATAACAATGCAGAGTTGGCAAAAGTTGCAGCTGAAGCATTAATGAGACTTGAATCCGAATGCTCAGCTCCATATGTATTGTTATACAATATGTATGCTGATGCTGGGCAATGTGATGAAGCAGCAGCTGTGAGACTGCTGATGGATAATAACAAGATAATTAAGCAAAAAGGCTATAGTCAGGTAGATTTTTCCCAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

124

Amino Acids

13.82

Weight (kDa)

4.53

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	58 - 119	1.7e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	35, 119, 125, 224
AluBI	AGCT	4 cut(s)	79, 203, 239, 299
AluI	AGCT	4 cut(s)	79, 203, 239, 299
Alw26I	GTCTC	2 cut(s)	211, 298
AlwNI	CAGNNNCTG	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	200, 293, 296
ApoI	RAATTY	1 cut(s)	119
AseI	ATTAAT	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	3 cut(s)	212, 305, 308
BccI	CCATC	1 cut(s)	307
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	211, 298
BfmI	CTRYAG	2 cut(s)	163, 346
BisI	GCNGC	3 cut(s)	201, 294, 297
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	3 cut(s)	202, 295, 298
BmiI	GGNNCC	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	53, 262
BmuI	ACTGGG	1 cut(s)	361
Bpu1102I	GCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	212, 305, 308
BseYI	CCCAGC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	211, 298
BsmI	GAATGC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	99
Bsp1720I	GCTNAGC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	44
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	2 cut(s)	211, 298
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 188, 197, 206
BstNSI	RCATGY	1 cut(s)	112
BstSFI	CTRYAG	2 cut(s)	163, 346
BstV1I	GCAGC	3 cut(s)	212, 305, 308
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	374
CaiI	CAGNNNCTG	1 cut(s)	299
CviAII	CATG	2 cut(s)	71, 109
CviJI	RGCY	8 cut(s)	25, 79, 89, 136, 203, 239, 299, 345
CviKI_1	RGCY	8 cut(s)	25, 79, 89, 136, 203, 239, 299, 345
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	46
FaeI	CATG	2 cut(s)	74, 112
FatI	CATG	2 cut(s)	70, 108
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	201, 294, 297
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	201, 294, 297
GluI	GCNGC	3 cut(s)	201, 294, 297
GsaI	CCCAGC	1 cut(s)	279
Hin1II	CATG	2 cut(s)	74, 112
HinfI	GANTC	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	44, 172, 182, 200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 188, 197, 206
HpyF3I	CTNAG	1 cut(s)	235
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	74, 112
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	146, 244
LpnPI	CCDG	4 cut(s)	150, 175, 261, 338
Lsp1109I	GCAGC	3 cut(s)	212, 305, 308
LweI	GCATC	2 cut(s)	53, 262
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MluCI	AATT	3 cut(s)	60, 119, 330
MnlI	CCTC	2 cut(s)	76, 79
Mph1103I	ATGCAT	1 cut(s)	46
MseI	TTAA	2 cut(s)	212, 333
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	2 cut(s)	203, 299
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	4 cut(s)	76, 188, 197, 206
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	2 cut(s)	74, 112
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	46
NspI	RCATGY	1 cut(s)	112
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	202, 295, 298
Ppu21I	YACGTR	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	299
PvuII	CAGCTG	2 cut(s)	203, 299
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	212, 333
SatI	GCNGC	3 cut(s)	201, 294, 297
Sau3AI	GATC	1 cut(s)	99
SetI	ASST	7 cut(s)	31, 81, 160, 205, 241, 301, 357
SfaNI	GCATC	2 cut(s)	53, 262
SfcI	CTRYAG	2 cut(s)	163, 346
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	60, 119, 330
TaiI	ACGT	1 cut(s)	31
TasI	AATT	3 cut(s)	60, 119, 330
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	212, 333
Tru9I	TTAA	2 cut(s)	212, 333
TscAI	CASTG	1 cut(s)	374
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	200, 293, 296
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	212
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.