Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Reverse (-)

41006566 .. 41010574

Gene Structure 4009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG229500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

ATGCCCCGAGCTCGTATTATTCTTCATCTACTCACCATCCCATTACCCAATCACGCATCCCCACAGCACTCTTGTTTTGCCTCAACTTCAAAACCCAGTAGTCATGCCAAAGACGTAGACCTTTTTTCACTGAACAGAAGGATCTCCCATTTGGTCCGAACTGGTCAGATAGAGCAAGCCAGGGAAGCCTTTGACAAGATGAAGCAACGGAATATCGTTACTTGGAATTCAATGATAACCGGGTATGTGAAACGCCGAGAGATGGCCAAGGCCCGGATGCTGTTCGACGAAATGCCTGACAGAGATGTTGTGTCCTGGAATTTGATGATATCCGGGTACGTTTCGTGCCGCGGAAGTCGTCGGTATGTTGAGGAGGGGAGGACTTTGTTTGATCAGATGCCGGTGAGGGACTGTGTTTCTTGGAACACAATGATCAGTGGGTACGCCAAGAATGGGAGGATGGGGGAGGCATTGCGGCTTTTCGATACCATGCCGCAGAGGAGTGTTGTTTCTTGGAATGCAATGGTTACCGGGTTTCTACAGAATGGCCATGTTGCGCGTGCTATTGAGTTTTTCGAGAGAATGCCGCAGAGGGATGGGGCTTCTCTTAGTGCACTCGTGTCGGGGCTTATTCAGAATGGTGAGCTGGATGAAGCTGCGAGGATTGTTGGCGAATGTGGGAAGAGGGATGAGGAGGGTGTGGAAGATTTGGTGGATGCTTATAATACGTTGGTTGCTGGTTATGGTCAGAGAGGAAGGGTTGAAGAGGCTCGGCGCCTTTTTGATCAAATACCATTTCGTCGTGAGAAGGGGAATGAGGACAGTGGGAGGTTTGAGAGAAATGTTGTATCGTGGAATTCTATGATTATGTGCTATGTGAAAACAGGAGATATTGTTTCTGCTAGAGAACTTTTTAACCAAATGATAGAACAAGATACCTTTTCGTGGAATACCATGATCAGCGGCTATGTTCATATGTCAGATATGGAAGAGGCTGCCAATCTCTTTCGTAGAATGCCAAATCCTGATACACTGTCATGGAATGCAATGATCTTAGGGTATGCCCAGGTTGGGCGTTTAAAACTGGCTCATGATTTTTTTGAGAGGATGCCGCACAAGAGTCTAATATCTTGGAACTCCATGATATCAGGGTATGAGAAAAATGAGGACTTTATGGGTGGAGTTAAGCTTTTCTCTCAGATGCAACTAGAAGGAGAGAAACCTGATAGACACACTTTATCATCAGTTCTTAGTGTGAGTACTGGGTTAGCGGATCTGCATCTAGGCATGCAGATTCATCAGCTGGTCATGAAGACAGTTATTGCAGATTTGCCAATAAACAACTCTCTTATAACTATGTATTCACGATGTGGTGCTATCAAAGAGGCAGAAACAATTTTTGATGAGATGAAACAGCAGAAAGATGTGATCTCCTGGAATGCAATGATTGGGGGCTATGCATCTCATGGTTTTGCTGCAGAGGCTTTAGGACTTTTTTGTTTGATGAAGAGGTCAAAGGTGCAACCTACATATATAACATTTATTGCAGTTTTAAATGCATGTGCTCATGCAGGATTAGTTGAAGAAGGCCGGAGTCAATTTAAATCCATGATTAGTGAATTTGGCATTGAGCCACGTATCGAACACTATGCCTCCCTTGTCGACATCATTGGTCGGCATGGGCAGCTTGAGGAGGCTCACGATTTGATCAATAGTATGCCATTTGAACCTGATAAGGCTGTGTGGGGAGCATTATTAGGTGCTTGTAGAGTGCATAACAATGTAGAGTTGGCAAAAGTTGCAGCTGAAGCATTAACAAGACTTGAACCTGAAAGCTCAGGTCCGTATGTATTGTTGTACAATATGTATGCTGATGCCGGACTATGGGATGAAGCAGCAGCTGTGAGATCGCTGATGGATGAAAACAAGATAACAAAGCATGCTGCCTATAGTAGGGTAAATTCTTCGCATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

658

Amino Acids

74.24

Weight (kDa)

6.31

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	70 - 102	1.6e-08	PPR repeat family
PPR	PF01535	73 - 102	1.5e-07	PPR repeat
PPR_1	PF12854	136 - 164	8.3e-09	PPR repeat
PPR_2	PF13041	137 - 169	9.6e-09	PPR repeat family
PPR	PF01535	139 - 167	1.4e-09	PPR repeat
PPR_2	PF13041	280 - 310	1.7e-06	PPR repeat family
PPR	PF01535	283 - 310	1.4e-07	PPR repeat
PPR	PF01535	314 - 339	1.5e-06	PPR repeat
PPR_2	PF13041	375 - 417	8.4e-08	PPR repeat family
PPR_2	PF13041	474 - 523	7.2e-10	PPR repeat family
PPR	PF01535	477 - 506	4.6e-07	PPR repeat
E_motif	PF20431	592 - 651	5.4e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	723, 1352
AccB1I	GGYRCC	1 cut(s)	774
AccI	GTMKAC	2 cut(s)	117, 1662
AccII	CGCG	2 cut(s)	351, 559
AciI	CCGC	8 cut(s)	349, 351, 475, 494, 587, 963, 1112, 1271
AclWI	GGATC	2 cut(s)	149, 1281
AcoI	YGGCCR	2 cut(s)	264, 547
AcsI	RAATTY	5 cut(s)	226, 319, 856, 1619, 1960
AcuI	CTGAAG	1 cut(s)	1827
AcyI	GRCGYC	1 cut(s)	775
AdeI	CACNNNGTG	1 cut(s)	1370
AfaI	GTAC	4 cut(s)	338, 443, 1261, 1859
AfiI	CCNNNNNNNGG	7 cut(s)	262, 273, 453, 945, 1071, 1884, 1953
AgsI	TTSAA	6 cut(s)	90, 231, 764, 1583, 1727, 1826
AjnI	CCWGG	4 cut(s)	179, 314, 1065, 1433
AluBI	AGCT	9 cut(s)	11, 646, 656, 1189, 1303, 1687, 1805, 1836, 1901
AluI	AGCT	9 cut(s)	11, 646, 656, 1189, 1303, 1687, 1805, 1836, 1901
Alw21I	GWGCWC	3 cut(s)	13, 616, 1567
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	149, 1281
AlwNI	CAGNNNCTG	1 cut(s)	1901
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	4 cut(s)	264, 270, 547, 1588
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	8 cut(s)	656, 995, 1475, 1684, 1802, 1895, 1898, 1943
ApoI	RAATTY	5 cut(s)	226, 319, 856, 1619, 1960
AspLEI	GCGC	2 cut(s)	559, 777
AspS9I	GGNCC	3 cut(s)	154, 271, 1841
AsuC2I	CCSGG	4 cut(s)	241, 274, 334, 532
AsuHPI	GGTGA	3 cut(s)	25, 415, 653
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	154, 1841
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	2 cut(s)	266, 549
BanI	GGYRCC	1 cut(s)	774
BanII	GRGCYC	1 cut(s)	13
BauI	CACGAG	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	1319
Bbv12I	GWGCWC	3 cut(s)	13, 616, 1567
BbvI	GCAGC	8 cut(s)	643, 982, 1462, 1696, 1814, 1907, 1910, 1930
BccI	CCATC	5 cut(s)	44, 256, 454, 590, 1909
BcgI	CGANNNNNNTGC	4 cut(s)	603, 637, 1631, 1665
BciT130I	CCWGG	4 cut(s)	181, 316, 1067, 1435
BclI	TGATCA	5 cut(s)	391, 432, 784, 957, 1707
BcnI	CCSGG	4 cut(s)	241, 274, 334, 532
BfaI	CTAG	3 cut(s)	903, 1208, 1283
BfmI	CTRYAG	3 cut(s)	539, 1476, 1948
BfoI	RGCGCY	1 cut(s)	778
BmcAI	AGTACT	1 cut(s)	1261
Bme1390I	CCNGG	8 cut(s)	181, 241, 274, 316, 334, 532, 1067, 1435
Bme18I	GGWCC	2 cut(s)	154, 1841
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	154, 271, 1841
BmiI	GGNNCC	1 cut(s)	776
BmrFI	CCNGG	8 cut(s)	181, 241, 274, 316, 334, 532, 1067, 1435
BmrI	ACTGGG	2 cut(s)	90, 1272
BmsI	GCATC	9 cut(s)	65, 267, 387, 706, 1098, 1191, 1288, 1469, 1864
BmuI	ACTGGG	2 cut(s)	90, 1272
BpiI	GAAGAC	1 cut(s)	1319
Bpu10I	CCTNAGC	1 cut(s)	1837
BpuEI	CTTGAG	1 cut(s)	1709
BpuMI	CCSGG	4 cut(s)	241, 274, 334, 532
BsaAI	YACGTR	1 cut(s)	1637
BsaBI	GATNNNNATC	1 cut(s)	1278
BsaHI	GRCGYC	1 cut(s)	775
BsaJI	CCNNGG	4 cut(s)	180, 267, 349, 1065
BsaXI	ACNNNNNCTCC	4 cut(s)	879, 909, 1637, 1667
Bsc4I	CCNNNNNNNGG	7 cut(s)	262, 273, 453, 945, 1071, 1884, 1953
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	4 cut(s)	96, 166, 1089, 1267
Bse3DI	GCAATG	5 cut(s)	470, 528, 1053, 1449, 1969
Bse8I	GATNNNNATC	1 cut(s)	1278
BseBI	CCWGG	4 cut(s)	181, 316, 1067, 1435
BseDI	CCNNGG	4 cut(s)	180, 267, 349, 1065
BseJI	GATNNNNATC	1 cut(s)	1278
BseLI	CCNNNNNNNGG	7 cut(s)	262, 273, 453, 945, 1071, 1884, 1953
BseMI	GCAATG	5 cut(s)	470, 528, 1053, 1449, 1969
BseMII	CTCAG	2 cut(s)	1211, 1851
BseNI	ACTGG	4 cut(s)	96, 166, 1089, 1267
BseRI	GAGGAG	4 cut(s)	386, 514, 707, 1706
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	8 cut(s)	643, 982, 1462, 1696, 1814, 1907, 1910, 1930
Bsh1236I	CGCG	2 cut(s)	351, 559
BshFI	GGCC	4 cut(s)	266, 272, 549, 1590
BshNI	GGYRCC	1 cut(s)	774
BsiHKAI	GWGCWC	3 cut(s)	13, 616, 1567
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	7 cut(s)	240, 274, 333, 401, 531, 1591, 1878
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	7 cut(s)	262, 273, 453, 945, 1071, 1884, 1953
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	5 cut(s)	523, 588, 1020, 1048, 1444
BsnI	GGCC	4 cut(s)	266, 272, 549, 1590
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	3 cut(s)	13, 616, 1567
Bsp1407I	TGTACA	1 cut(s)	1857
BspACI	CCGC	8 cut(s)	349, 351, 475, 494, 587, 963, 1112, 1271
BspANI	GGCC	4 cut(s)	266, 272, 549, 1590
BspCNI	CTCAG	2 cut(s)	1210, 1850
BspFNI	CGCG	2 cut(s)	351, 559
BspHI	TCATGA	2 cut(s)	1090, 1308
BspLI	GGNNCC	1 cut(s)	776
BspMAI	CTGCAG	1 cut(s)	1480
BspPI	GGATC	2 cut(s)	149, 1281
BspT107I	GGYRCC	1 cut(s)	774
BsrDI	GCAATG	5 cut(s)	470, 528, 1053, 1449, 1969
BsrFI	RCCGGY	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	1857
BsrI	ACTGG	4 cut(s)	96, 166, 1089, 1267
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	4 cut(s)	180, 267, 349, 1065
BssNI	GRCGYC	1 cut(s)	775
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	4 cut(s)	181, 316, 1067, 1435
Bst4CI	ACNGT	4 cut(s)	413, 824, 1035, 1318
Bst6I	CTCTTC	4 cut(s)	677, 759, 984, 1502
BstACI	GRCGYC	1 cut(s)	775
BstAPI	GCANNNNNTGC	1 cut(s)	1799
BstAUI	TGTACA	1 cut(s)	1857
BstBAI	YACGTR	1 cut(s)	1637
BstC8I	GCNNGC	4 cut(s)	177, 561, 1289, 1941
BstDEI	CTNAG	5 cut(s)	608, 1054, 1197, 1250, 1837
BstDSI	CCRYGG	1 cut(s)	349
BstEII	GGTNACC	1 cut(s)	526
BstENI	CCTNNNNNAGG	1 cut(s)	1951
BstFNI	CGCG	2 cut(s)	351, 559
BstH2I	RGCGCY	1 cut(s)	778
BstHHI	GCGC	2 cut(s)	559, 777
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 1481, 1684, 1799, 1808
BstNI	CCWGG	4 cut(s)	181, 316, 1067, 1435
BstNSI	RCATGY	3 cut(s)	1291, 1563, 1943
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	8 cut(s)	179, 239, 272, 314, 332, 530, 1065, 1433
BstSFI	CTRYAG	3 cut(s)	539, 1476, 1948
BstSLI	GKGCMC	1 cut(s)	616
BstUI	CGCG	2 cut(s)	351, 559
BstV1I	GCAGC	8 cut(s)	643, 982, 1462, 1696, 1814, 1907, 1910, 1930
BstV2I	GAAGAC	1 cut(s)	1319
BstX2I	RGATCY	2 cut(s)	141, 1273
BstYI	RGATCY	2 cut(s)	141, 1273
BsuRI	GGCC	4 cut(s)	266, 272, 549, 1590
BtgI	CCRYGG	1 cut(s)	349
BtsIMutI	CAGTG	4 cut(s)	128, 442, 829, 1031
Cac8I	GCNNGC	4 cut(s)	177, 561, 1289, 1941
CaiI	CAGNNNCTG	1 cut(s)	1901
CciI	TCATGA	2 cut(s)	1090, 1308
CfoI	GCGC	2 cut(s)	559, 777
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	3 cut(s)	154, 271, 1841
Cfr42I	CCGCGG	1 cut(s)	352
Csp6I	GTAC	4 cut(s)	337, 442, 1260, 1858
CviQI	GTAC	4 cut(s)	337, 442, 1260, 1858
DdeI	CTNAG	5 cut(s)	608, 1054, 1197, 1250, 1837
DinI	GGCGCC	1 cut(s)	776
DraI	TTTAAA	3 cut(s)	1080, 1554, 1603
DraIII	CACNNNGTG	1 cut(s)	1370
EaeI	YGGCCR	2 cut(s)	264, 547
Eam1104I	CTCTTC	4 cut(s)	677, 759, 984, 1502
EarI	CTCTTC	4 cut(s)	677, 759, 984, 1502
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	2 cut(s)	330, 1146
Eco47I	GGWCC	2 cut(s)	154, 1841
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	1827
Eco88I	CYCGRG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	11
EcoNI	CCTNNNNNAGG	1 cut(s)	1951
EcoO65I	GGTNACC	1 cut(s)	526
EcoRI	GAATTC	2 cut(s)	226, 856
EcoRII	CCWGG	4 cut(s)	179, 314, 1065, 1433
EcoRV	GATATC	2 cut(s)	330, 1146
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	2 cut(s)	1462, 1561
EcoT38I	GRGCYC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	776
EheI	GGCGCC	1 cut(s)	776
ErhI	CCWWGG	1 cut(s)	267
FaqI	GGGAC	1 cut(s)	422
FauNDI	CATATG	1 cut(s)	975
FbaI	TGATCA	5 cut(s)	391, 432, 784, 957, 1707
FblI	GTMKAC	2 cut(s)	117, 1662
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	3 cut(s)	903, 1208, 1283
GlaI	GCGC	2 cut(s)	558, 776
HaeII	RGCGCY	1 cut(s)	778
HaeIII	GGCC	4 cut(s)	266, 272, 549, 1590
HapII	CCGG	7 cut(s)	240, 274, 333, 401, 531, 1591, 1878
HhaI	GCGC	2 cut(s)	559, 777
Hin1I	GRCGYC	1 cut(s)	775
Hin6I	GCGC	2 cut(s)	557, 775
HinP1I	GCGC	2 cut(s)	557, 775
HincII	GTYRAC	1 cut(s)	1663
HindII	GTYRAC	1 cut(s)	1663
HindIII	AAGCTT	1 cut(s)	1187
HinfI	GANTC	3 cut(s)	1120, 1294, 1594
HpaII	CCGG	7 cut(s)	240, 274, 333, 401, 531, 1591, 1878
HphI	GGTGA	3 cut(s)	25, 415, 653
Hpy166II	GTNNAC	3 cut(s)	118, 614, 1663
Hpy188I	TCNGA	7 cut(s)	158, 168, 396, 636, 750, 982, 1200
Hpy188III	TCNNGA	7 cut(s)	577, 803, 1025, 1091, 1309, 1365, 1700
Hpy8I	GTNNAC	3 cut(s)	118, 614, 1663
Hpy99I	CGWCG	3 cut(s)	290, 363, 804
HpyAV	CCTTC	5 cut(s)	132, 750, 802, 1205, 1580
HpyCH4III	ACNGT	4 cut(s)	413, 824, 1035, 1318
HpyCH4IV	ACGT	4 cut(s)	114, 339, 728, 1636
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 1481, 1684, 1799, 1808
HpyF3I	CTNAG	5 cut(s)	608, 1054, 1197, 1250, 1837
HpySE526I	ACGT	4 cut(s)	114, 339, 728, 1636
Hsp92I	GRCGYC	1 cut(s)	775
HspAI	GCGC	2 cut(s)	557, 775
KasI	GGCGCC	1 cut(s)	774
Ksp22I	TGATCA	5 cut(s)	391, 432, 784, 957, 1707
KspI	CCGCGG	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	1748
Lsp1109I	GCAGC	8 cut(s)	643, 982, 1462, 1696, 1814, 1907, 1910, 1930
LweI	GCATC	9 cut(s)	65, 267, 387, 706, 1098, 1191, 1288, 1469, 1864
MaeI	CTAG	3 cut(s)	903, 1208, 1283
MaeII	ACGT	4 cut(s)	114, 339, 728, 1636
MaeIII	GTNAC	2 cut(s)	217, 526
MboII	GAAGA	9 cut(s)	14, 694, 716, 776, 1001, 1324, 1519, 1595, 1956
MflI	RGATCY	2 cut(s)	141, 1273
MhlI	GDGCHC	3 cut(s)	13, 616, 1567
MlsI	TGGCCA	2 cut(s)	266, 549
MluCI	AATT	7 cut(s)	226, 319, 856, 1395, 1598, 1619, 1960
MluNI	TGGCCA	2 cut(s)	266, 549
Mly113I	GGCGCC	1 cut(s)	775
MlyI	GAGTC	2 cut(s)	1129, 1603
Mox20I	TGGCCA	2 cut(s)	266, 549
Mph1103I	ATGCAT	2 cut(s)	1462, 1561
MscI	TGGCCA	2 cut(s)	266, 549
MseI	TTAA	6 cut(s)	915, 1079, 1185, 1553, 1602, 1814
MslI	CAYNNNNRTG	2 cut(s)	1036, 1779
Msp20I	TGGCCA	2 cut(s)	266, 549
MspA1I	CMGCKG	5 cut(s)	351, 963, 1303, 1805, 1901
MspI	CCGG	7 cut(s)	240, 274, 333, 401, 531, 1591, 1878
MspR9I	CCNGG	8 cut(s)	181, 241, 274, 316, 334, 532, 1067, 1435
Mva1269I	GAATGC	5 cut(s)	523, 588, 1020, 1048, 1444
MvaI	CCWGG	4 cut(s)	181, 316, 1067, 1435
MvnI	CGCG	2 cut(s)	351, 559
MwoI	GCNNNNNNNGC	5 cut(s)	185, 1481, 1684, 1799, 1808
NarI	GGCGCC	1 cut(s)	775
NciI	CCSGG	4 cut(s)	241, 274, 334, 532
NdeI	CATATG	1 cut(s)	975
NlaIV	GGNNCC	1 cut(s)	776
NmeAIII	GCCGAG	2 cut(s)	281, 751
NsiI	ATGCAT	2 cut(s)	1462, 1561
NspI	RCATGY	3 cut(s)	1291, 1563, 1943
PaeI	GCATGC	2 cut(s)	1291, 1943
PagI	TCATGA	2 cut(s)	1090, 1308
PctI	GAATGC	5 cut(s)	523, 588, 1020, 1048, 1444
PfeI	GAWTC	1 cut(s)	1294
PfoI	TCCNGGA	2 cut(s)	314, 1433
PleI	GAGTC	2 cut(s)	1128, 1602
PluTI	GGCGCC	1 cut(s)	778
PpsI	GAGTC	2 cut(s)	1128, 1602
Ppu21I	YACGTR	1 cut(s)	1637
PsiI	TTATAA	2 cut(s)	723, 1352
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	4 cut(s)	179, 314, 1065, 1433
PspEI	GGTNACC	1 cut(s)	526
PspGI	CCWGG	4 cut(s)	179, 314, 1065, 1433
PspN4I	GGNNCC	1 cut(s)	776
PspPI	GGNCC	3 cut(s)	154, 271, 1841
PstI	CTGCAG	1 cut(s)	1480
PstNI	CAGNNNCTG	1 cut(s)	1901
PsuI	RGATCY	2 cut(s)	141, 1273
PvuII	CAGCTG	3 cut(s)	1303, 1805, 1901
RsaI	GTAC	4 cut(s)	338, 443, 1261, 1859
RsaNI	GTAC	4 cut(s)	337, 442, 1260, 1858
RseI	CAYNNNNRTG	2 cut(s)	1036, 1779
SacI	GAGCTC	1 cut(s)	13
SacII	CCGCGG	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	1661
SaqAI	TTAA	6 cut(s)	915, 1079, 1185, 1553, 1602, 1814
Sau96I	GGNCC	3 cut(s)	154, 271, 1841
ScaI	AGTACT	1 cut(s)	1261
SchI	GAGTC	2 cut(s)	1129, 1603
ScrFI	CCNGG	8 cut(s)	181, 241, 274, 316, 334, 532, 1067, 1435
SduI	GDGCHC	3 cut(s)	13, 616, 1567
SfaNI	GCATC	9 cut(s)	65, 267, 387, 706, 1098, 1191, 1288, 1469, 1864
SfcI	CTRYAG	3 cut(s)	539, 1476, 1948
SfoI	GGCGCC	1 cut(s)	776
Sfr303I	CCGCGG	1 cut(s)	352
SgrBI	CCGCGG	1 cut(s)	352
SinI	GGWCC	2 cut(s)	154, 1841
SmiI	ATTTAAAT	1 cut(s)	1603
SmiMI	CAYNNNNRTG	2 cut(s)	1036, 1779
SmlI	CTYRAG	1 cut(s)	1688
SmoI	CTYRAG	1 cut(s)	1688
SphI	GCATGC	2 cut(s)	1291, 1943
Sse9I	AATT	7 cut(s)	226, 319, 856, 1395, 1598, 1619, 1960
SsiI	CCGC	8 cut(s)	349, 351, 475, 494, 587, 963, 1112, 1271
SspDI	GGCGCC	1 cut(s)	774
SspMI	CTAG	3 cut(s)	903, 1208, 1283
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	8 cut(s)	179, 239, 272, 314, 332, 530, 1065, 1433
StyI	CCWWGG	1 cut(s)	267
SwaI	ATTTAAAT	1 cut(s)	1603
TaaI	ACNGT	4 cut(s)	413, 824, 1035, 1318
TaiI	ACGT	4 cut(s)	117, 342, 731, 1639
TaqI	TCGA	5 cut(s)	285, 483, 576, 1641, 1662
TasI	AATT	7 cut(s)	226, 319, 856, 1395, 1598, 1619, 1960
TatI	WGTACW	2 cut(s)	1259, 1857
TauI	GCSGC	6 cut(s)	351, 478, 496, 589, 966, 1114
TfiI	GAWTC	1 cut(s)	1294
Tru1I	TTAA	6 cut(s)	915, 1079, 1185, 1553, 1602, 1814
Tru9I	TTAA	6 cut(s)	915, 1079, 1185, 1553, 1602, 1814
TscAI	CASTG	4 cut(s)	135, 442, 829, 1038
TseI	GCWGC	8 cut(s)	656, 995, 1475, 1684, 1802, 1895, 1898, 1943
TspGWI	ACGGA	2 cut(s)	223, 1833
TspRI	CASTG	4 cut(s)	135, 442, 829, 1038
VneI	GTGCAC	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	154, 1841
XagI	CCTNNNNNAGG	1 cut(s)	1951
XapI	RAATTY	5 cut(s)	226, 319, 856, 1619, 1960
XceI	RCATGY	3 cut(s)	1291, 1563, 1943
XmiI	GTMKAC	2 cut(s)	117, 1662
XspI	CTAG	3 cut(s)	903, 1208, 1283
ZrmI	AGTACT	1 cut(s)	1261
Zsp2I	ATGCAT	2 cut(s)	1462, 1561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.