Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00971

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Reverse (-)

22970 .. 24982

Gene Structure 2013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1770 bp

ATGATTCTGGGTAATGCAAATGGTTTCATATATAAACTCATGCCCCGAGCTCGTATTATTCTTCGTCTACTCACCATCCCATTACCCAATAATCACGCATCCCCACAGCACTCTTGTTTTGCCTCAACTTCAAAACCCGGCAGTCATAAGGATCTCCCATTGATCCGAACTGGTCAGATAGAGCAAGCCAGGGAAGCCTTTGACAAGATGAAGCGACGGAATATCGTTACTTGGAATTCAATGATAACCGGGTATGTGAAACGCCGAGAGATGGCCAAGGCCCGGAAGCTGTTCGACGAAATGCCTGACAGAGATGTTGTGTCCTGGAATTTGATGATATCCGGGTACGTTTCGTGCCGCGGAAGTCGTCGGCATCCGGTGAGGGACTGTGTTTCTTGGAACACGATGATCAGTGGGTACGCCAAGAATGGGAGGATGGGGGAGGCATTGCGGCTTTTCGATGCCATGCCGCAGAGGAGTGTTGTTTCTTGGAATGCAATGGTTACCGGGTTTCTACAGAATGGCCATGTTGCGCGTGCGATTGAGTTTTTCGAGAGAATGCCGCAGAGGGATGGGGCTTCTCTTAGTGCACTCGTGTCGGGGCTTATTCAGAATGGTGAGCTGGATGAAGCTGCGAGGATTGTTGGTGAATGTGGGAAGAGGGATGAGGAGGGGGTGGAAGATTTGGTGGATGCTTATAATACGTTGGTTGCTGGTTATGGTCAGAGAGGAAGGGTTGAAGAGGCTCGGCGCCTTTTTGATCAAATACCATTTCGTCGTGAGAAGGGGAATGAGGACAGTGGGAGGTTTGAGAGGAATGTATCGTGGAATTCTATGATTATGTGCTATGTGAAAACAGGAAATATTGTTTCTGCTAGAGAACTTTTTGACCAAATGATAGAACGAGATACCTTTTCGTGGAATACCATGATCAGCGGCTATGTTCATATGTCAGATATGGAAGAGGCTGCCAATCTCTTTCGTAGAATGCCAAATCCTGATACACTGTCATGGAATGCAATGATCTTAGGGTATGCCCAGGTTGGGCGTTTAAAACTGGCTCATGATTTTTTTGAGAGGATGCCGCCACAAGGTCTAAATATCTTGGAACTCCATGATAGCAGGCAGATTCATCAGCTGGTCATGAAGACAGTTATTGCAGATTTGCCAATAAACAACTCTCTTATAACTATGTATTCACGATGTGGTGCTATCAAAGAGGCAGAAACAATTTTTGATGAGATGAAGCAGCAGAAAGATGTGATCTCCTGGAATGCAATGATTGGGGGCTATGCATCTCATGAGGTCAAAGGTGCAACCTACATTATAACATTTATTGCAGTTTTAAATGCATGTGCTCATGCAGGATTAGTTGAAGAAGGCCGGAGTCAATTTAAATCCATGATTAGTGAATTTGGCATTGAGCCACGTATCGAACACTATGCCTCCCTTGTCGACATCATTGGTCGGCATGGGCAGCTTGAGGAGGCTCACGATTTGATCAATAGTATGGCATTTGAACCTGATAAGGCTGTGTGGGGAGCATTATTAGGTGCTTGTAGAGTGCATAACAATGTAGAGTTGGCAAAAGTTGCAGCTGAAGCATTAACAAGACTTGAACCTGAAAGCTCAGGTCCGTATGTATTGTTGTACAATATGTATGCTGATGCCGGACTATGGGATGAAGCAGCAGCTGTGAGATCGCTGATGGATGAAAACAAGATAACAAAGCATGCTGCCTATAGTAGGGTAAATTCTTCGCATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

589

Amino Acids

66.46

Weight (kDa)

6.8

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	73 - 105	4.2e-09	PPR repeat family
PPR	PF01535	76 - 105	4.6e-08	PPR repeat
PPR_1	PF12854	128 - 156	1.3e-08	PPR repeat
PPR_2	PF13041	129 - 161	1e-08	PPR repeat family
PPR	PF01535	131 - 159	1e-09	PPR repeat
PPR	PF01535	274 - 302	4.8e-08	PPR repeat
PPR	PF01535	305 - 330	1.3e-06	PPR repeat
E_motif	PF20431	523 - 582	4.7e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	699, 1187, 1328
AccB1I	GGYRCC	1 cut(s)	750
AccI	GTMKAC	2 cut(s)	67, 1455
AccII	CGCG	2 cut(s)	360, 535
AciI	CCGC	7 cut(s)	358, 360, 451, 470, 563, 936, 1085
AclWI	GGATC	2 cut(s)	157, 159
AcoI	YGGCCR	2 cut(s)	273, 523
AcsI	RAATTY	5 cut(s)	235, 328, 829, 1412, 1753
AcuI	CTGAAG	1 cut(s)	1620
AcyI	GRCGYC	1 cut(s)	751
AdeI	CACNNNGTG	1 cut(s)	1205
AfaI	GTAC	3 cut(s)	347, 419, 1652
AfiI	CCNNNNNNNGG	8 cut(s)	271, 282, 429, 918, 1044, 1091, 1677, 1746
AgsI	TTSAA	6 cut(s)	132, 240, 740, 1376, 1520, 1619
AjnI	CCWGG	4 cut(s)	188, 323, 1038, 1268
AluBI	AGCT	9 cut(s)	50, 289, 622, 632, 1138, 1480, 1598, 1629, 1694
AluI	AGCT	9 cut(s)	50, 289, 622, 632, 1138, 1480, 1598, 1629, 1694
Alw21I	GWGCWC	3 cut(s)	52, 592, 1360
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	2 cut(s)	157, 159
AlwNI	CAGNNNCTG	1 cut(s)	1694
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	4 cut(s)	273, 279, 523, 1381
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	8 cut(s)	632, 968, 1249, 1477, 1595, 1688, 1691, 1736
ApoI	RAATTY	5 cut(s)	235, 328, 829, 1412, 1753
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	535, 753
AspS9I	GGNCC	2 cut(s)	280, 1634
AsuC2I	CCSGG	5 cut(s)	138, 250, 283, 343, 508
AsuHPI	GGTGA	4 cut(s)	64, 391, 629, 659
AvaI	CYCGRG	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	1634
BaeGI	GKGCMC	1 cut(s)	592
BalI	TGGCCA	2 cut(s)	275, 525
BanI	GGYRCC	1 cut(s)	750
BanII	GRGCYC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	1154
Bbv12I	GWGCWC	3 cut(s)	52, 592, 1360
BbvI	GCAGC	8 cut(s)	619, 955, 1261, 1489, 1607, 1700, 1703, 1723
BccI	CCATC	5 cut(s)	83, 265, 430, 566, 1702
BcgI	CGANNNNNNTGC	4 cut(s)	579, 613, 1424, 1458
BciT130I	CCWGG	4 cut(s)	190, 325, 1040, 1270
BclI	TGATCA	4 cut(s)	408, 760, 930, 1500
BcnI	CCSGG	5 cut(s)	138, 250, 283, 343, 508
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	2 cut(s)	515, 1741
BfoI	RGCGCY	1 cut(s)	754
Bme1390I	CCNGG	9 cut(s)	138, 190, 250, 283, 325, 343, 508, 1040, 1270
Bme18I	GGWCC	1 cut(s)	1634
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	280, 1634
BmiI	GGNNCC	1 cut(s)	752
BmrFI	CCNGG	9 cut(s)	138, 190, 250, 283, 325, 343, 508, 1040, 1270
BmsI	GCATC	7 cut(s)	107, 382, 451, 682, 1071, 1304, 1657
BpiI	GAAGAC	1 cut(s)	1154
Bpu10I	CCTNAGC	1 cut(s)	1630
BpuEI	CTTGAG	1 cut(s)	1502
BpuMI	CCSGG	5 cut(s)	138, 250, 283, 343, 508
BsaAI	YACGTR	1 cut(s)	1430
BsaHI	GRCGYC	1 cut(s)	751
BsaJI	CCNNGG	4 cut(s)	189, 276, 358, 1038
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	1430, 1460
Bsc4I	CCNNNNNNNGG	8 cut(s)	271, 282, 429, 918, 1044, 1091, 1677, 1746
Bse1I	ACTGG	2 cut(s)	175, 1062
Bse3DI	GCAATG	5 cut(s)	446, 504, 1026, 1284, 1762
BseBI	CCWGG	4 cut(s)	190, 325, 1040, 1270
BseDI	CCNNGG	4 cut(s)	189, 276, 358, 1038
BseLI	CCNNNNNNNGG	8 cut(s)	271, 282, 429, 918, 1044, 1091, 1677, 1746
BseMI	GCAATG	5 cut(s)	446, 504, 1026, 1284, 1762
BseMII	CTCAG	1 cut(s)	1644
BseNI	ACTGG	2 cut(s)	175, 1062
BseRI	GAGGAG	3 cut(s)	490, 683, 1499
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	8 cut(s)	619, 955, 1261, 1489, 1607, 1700, 1703, 1723
Bsh1236I	CGCG	2 cut(s)	360, 535
BshFI	GGCC	4 cut(s)	275, 281, 525, 1383
BshNI	GGYRCC	1 cut(s)	750
BsiHKAI	GWGCWC	3 cut(s)	52, 592, 1360
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	8 cut(s)	138, 249, 283, 342, 377, 507, 1384, 1671
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	8 cut(s)	271, 282, 429, 918, 1044, 1091, 1677, 1746
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	5 cut(s)	499, 564, 993, 1021, 1279
BsnI	GGCC	4 cut(s)	275, 281, 525, 1383
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	3 cut(s)	52, 592, 1360
Bsp1407I	TGTACA	1 cut(s)	1650
Bsp143I	GATC	9 cut(s)	151, 162, 408, 760, 930, 1023, 1263, 1500, 1700
BspACI	CCGC	7 cut(s)	358, 360, 451, 470, 563, 936, 1085
BspANI	GGCC	4 cut(s)	275, 281, 525, 1383
BspCNI	CTCAG	1 cut(s)	1643
BspFNI	CGCG	2 cut(s)	360, 535
BspHI	TCATGA	3 cut(s)	1063, 1143, 1300
BspLI	GGNNCC	1 cut(s)	752
BspPI	GGATC	2 cut(s)	157, 159
BspT107I	GGYRCC	1 cut(s)	750
BsrDI	GCAATG	5 cut(s)	446, 504, 1026, 1284, 1762
BsrGI	TGTACA	1 cut(s)	1650
BsrI	ACTGG	2 cut(s)	175, 1062
BssECI	CCNNGG	4 cut(s)	189, 276, 358, 1038
BssMI	GATC	9 cut(s)	151, 162, 408, 760, 930, 1023, 1263, 1500, 1700
BssNI	GRCGYC	1 cut(s)	751
BssSI	CACGAG	1 cut(s)	593
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	593
Bst2UI	CCWGG	4 cut(s)	190, 325, 1040, 1270
Bst4CI	ACNGT	4 cut(s)	389, 800, 1008, 1153
Bst6I	CTCTTC	3 cut(s)	653, 735, 957
BstACI	GRCGYC	1 cut(s)	751
BstAPI	GCANNNNNTGC	1 cut(s)	1592
BstAUI	TGTACA	1 cut(s)	1650
BstBAI	YACGTR	1 cut(s)	1430
BstC8I	GCNNGC	4 cut(s)	186, 537, 1124, 1734
BstDEI	CTNAG	3 cut(s)	584, 1027, 1630
BstDSI	CCRYGG	1 cut(s)	358
BstEII	GGTNACC	1 cut(s)	502
BstENI	CCTNNNNNAGG	1 cut(s)	1744
BstFNI	CGCG	2 cut(s)	360, 535
BstH2I	RGCGCY	1 cut(s)	754
BstHHI	GCGC	2 cut(s)	535, 753
BstKTI	GATC	9 cut(s)	154, 165, 411, 763, 933, 1026, 1266, 1503, 1703
BstMBI	GATC	9 cut(s)	151, 162, 408, 760, 930, 1023, 1263, 1500, 1700
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 1477, 1592, 1601
BstNI	CCWGG	4 cut(s)	190, 325, 1040, 1270
BstNSI	RCATGY	2 cut(s)	1356, 1736
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	9 cut(s)	136, 188, 248, 281, 323, 341, 506, 1038, 1268
BstSFI	CTRYAG	2 cut(s)	515, 1741
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	2 cut(s)	360, 535
BstV1I	GCAGC	8 cut(s)	619, 955, 1261, 1489, 1607, 1700, 1703, 1723
BstV2I	GAAGAC	1 cut(s)	1154
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	275, 281, 525, 1383
BtgI	CCRYGG	1 cut(s)	358
BtsIMutI	CAGTG	3 cut(s)	418, 805, 1004
Cac8I	GCNNGC	4 cut(s)	186, 537, 1124, 1734
CaiI	CAGNNNCTG	1 cut(s)	1694
CciI	TCATGA	3 cut(s)	1063, 1143, 1300
CfoI	GCGC	2 cut(s)	535, 753
Cfr13I	GGNCC	2 cut(s)	280, 1634
Cfr42I	CCGCGG	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	346, 418, 1651
CviQI	GTAC	3 cut(s)	346, 418, 1651
DdeI	CTNAG	3 cut(s)	584, 1027, 1630
DinI	GGCGCC	1 cut(s)	752
DpnI	GATC	9 cut(s)	153, 164, 410, 762, 932, 1025, 1265, 1502, 1702
DpnII	GATC	9 cut(s)	151, 162, 408, 760, 930, 1023, 1263, 1500, 1700
DraI	TTTAAA	3 cut(s)	1053, 1347, 1396
DraIII	CACNNNGTG	1 cut(s)	1205
EaeI	YGGCCR	2 cut(s)	273, 523
Eam1104I	CTCTTC	3 cut(s)	653, 735, 957
EarI	CTCTTC	3 cut(s)	653, 735, 957
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	1634
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	1620
Eco88I	CYCGRG	1 cut(s)	45
Eco91I	GGTNACC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	1744
EcoO65I	GGTNACC	1 cut(s)	502
EcoRI	GAATTC	2 cut(s)	235, 829
EcoRII	CCWGG	4 cut(s)	188, 323, 1038, 1268
EcoRV	GATATC	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	2 cut(s)	1297, 1354
EcoT38I	GRGCYC	1 cut(s)	52
EgeI	GGCGCC	1 cut(s)	752
EheI	GGCGCC	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	276
FaqI	GGGAC	1 cut(s)	398
FauNDI	CATATG	1 cut(s)	948
FbaI	TGATCA	4 cut(s)	408, 760, 930, 1500
FblI	GTMKAC	2 cut(s)	67, 1455
FriOI	GRGCYC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	876
GlaI	GCGC	2 cut(s)	534, 752
HaeII	RGCGCY	1 cut(s)	754
HaeIII	GGCC	4 cut(s)	275, 281, 525, 1383
HapII	CCGG	8 cut(s)	138, 249, 283, 342, 377, 507, 1384, 1671
HhaI	GCGC	2 cut(s)	535, 753
Hin1I	GRCGYC	1 cut(s)	751
Hin6I	GCGC	2 cut(s)	533, 751
HinP1I	GCGC	2 cut(s)	533, 751
HincII	GTYRAC	1 cut(s)	1456
HindII	GTYRAC	1 cut(s)	1456
HinfI	GANTC	3 cut(s)	4, 1129, 1387
HpaII	CCGG	8 cut(s)	138, 249, 283, 342, 377, 507, 1384, 1671
HphI	GGTGA	4 cut(s)	64, 391, 629, 659
Hpy166II	GTNNAC	3 cut(s)	68, 590, 1456
Hpy188I	TCNGA	5 cut(s)	167, 177, 612, 726, 955
Hpy188III	TCNNGA	8 cut(s)	553, 779, 998, 1064, 1144, 1200, 1301, 1493
Hpy8I	GTNNAC	3 cut(s)	68, 590, 1456
Hpy99I	CGWCG	4 cut(s)	219, 299, 372, 780
HpyAV	CCTTC	3 cut(s)	726, 778, 1373
HpyCH4III	ACNGT	4 cut(s)	389, 800, 1008, 1153
HpyCH4IV	ACGT	3 cut(s)	348, 704, 1429
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 1477, 1592, 1601
HpyF3I	CTNAG	3 cut(s)	584, 1027, 1630
HpySE526I	ACGT	3 cut(s)	348, 704, 1429
Hsp92I	GRCGYC	1 cut(s)	751
HspAI	GCGC	2 cut(s)	533, 751
KasI	GGCGCC	1 cut(s)	750
Ksp22I	TGATCA	4 cut(s)	408, 760, 930, 1500
KspI	CCGCGG	1 cut(s)	361
Kzo9I	GATC	9 cut(s)	151, 162, 408, 760, 930, 1023, 1263, 1500, 1700
LmnI	GCTCC	1 cut(s)	1541
Lsp1109I	GCAGC	8 cut(s)	619, 955, 1261, 1489, 1607, 1700, 1703, 1723
LweI	GCATC	7 cut(s)	107, 382, 451, 682, 1071, 1304, 1657
MaeI	CTAG	1 cut(s)	876
MaeII	ACGT	3 cut(s)	348, 704, 1429
MaeIII	GTNAC	2 cut(s)	226, 502
MalI	GATC	9 cut(s)	153, 164, 410, 762, 932, 1025, 1265, 1502, 1702
MboI	GATC	9 cut(s)	151, 162, 408, 760, 930, 1023, 1263, 1500, 1700
MboII	GAAGA	8 cut(s)	53, 670, 692, 752, 974, 1159, 1388, 1749
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	3 cut(s)	52, 592, 1360
MlsI	TGGCCA	2 cut(s)	275, 525
MluCI	AATT	7 cut(s)	235, 328, 829, 1230, 1391, 1412, 1753
MluNI	TGGCCA	2 cut(s)	275, 525
Mly113I	GGCGCC	1 cut(s)	751
MlyI	GAGTC	1 cut(s)	1396
Mox20I	TGGCCA	2 cut(s)	275, 525
Mph1103I	ATGCAT	2 cut(s)	1297, 1354
MroXI	GAANNNNTTC	1 cut(s)	290
MscI	TGGCCA	2 cut(s)	275, 525
MseI	TTAA	4 cut(s)	1052, 1346, 1395, 1607
MslI	CAYNNNNRTG	2 cut(s)	1009, 1572
Msp20I	TGGCCA	2 cut(s)	275, 525
MspA1I	CMGCKG	5 cut(s)	360, 936, 1138, 1598, 1694
MspI	CCGG	8 cut(s)	138, 249, 283, 342, 377, 507, 1384, 1671
MspR9I	CCNGG	9 cut(s)	138, 190, 250, 283, 325, 343, 508, 1040, 1270
Mva1269I	GAATGC	5 cut(s)	499, 564, 993, 1021, 1279
MvaI	CCWGG	4 cut(s)	190, 325, 1040, 1270
MvnI	CGCG	2 cut(s)	360, 535
MwoI	GCNNNNNNNGC	4 cut(s)	194, 1477, 1592, 1601
NarI	GGCGCC	1 cut(s)	751
NciI	CCSGG	5 cut(s)	138, 250, 283, 343, 508
NdeI	CATATG	1 cut(s)	948
NdeII	GATC	9 cut(s)	151, 162, 408, 760, 930, 1023, 1263, 1500, 1700
NlaIV	GGNNCC	1 cut(s)	752
NmeAIII	GCCGAG	2 cut(s)	290, 727
NsiI	ATGCAT	2 cut(s)	1297, 1354
NspI	RCATGY	2 cut(s)	1356, 1736
PaeI	GCATGC	1 cut(s)	1736
PagI	TCATGA	3 cut(s)	1063, 1143, 1300
PctI	GAATGC	5 cut(s)	499, 564, 993, 1021, 1279
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	4, 1129
PfoI	TCCNGGA	2 cut(s)	323, 1268
PleI	GAGTC	1 cut(s)	1395
PluTI	GGCGCC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	1395
Ppu21I	YACGTR	1 cut(s)	1430
PsiI	TTATAA	3 cut(s)	699, 1187, 1328
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	4 cut(s)	188, 323, 1038, 1268
PspEI	GGTNACC	1 cut(s)	502
PspGI	CCWGG	4 cut(s)	188, 323, 1038, 1268
PspN4I	GGNNCC	1 cut(s)	752
PspPI	GGNCC	2 cut(s)	280, 1634
PstNI	CAGNNNCTG	1 cut(s)	1694
PsuI	RGATCY	1 cut(s)	151
PvuII	CAGCTG	3 cut(s)	1138, 1598, 1694
RsaI	GTAC	3 cut(s)	347, 419, 1652
RsaNI	GTAC	3 cut(s)	346, 418, 1651
RseI	CAYNNNNRTG	2 cut(s)	1009, 1572
SacI	GAGCTC	1 cut(s)	52
SacII	CCGCGG	1 cut(s)	361
SalI	GTCGAC	1 cut(s)	1454
SaqAI	TTAA	4 cut(s)	1052, 1346, 1395, 1607
Sau3AI	GATC	9 cut(s)	151, 162, 408, 760, 930, 1023, 1263, 1500, 1700
Sau96I	GGNCC	2 cut(s)	280, 1634
SchI	GAGTC	1 cut(s)	1396
ScrFI	CCNGG	9 cut(s)	138, 190, 250, 283, 325, 343, 508, 1040, 1270
SduI	GDGCHC	3 cut(s)	52, 592, 1360
SfaNI	GCATC	7 cut(s)	107, 382, 451, 682, 1071, 1304, 1657
SfcI	CTRYAG	2 cut(s)	515, 1741
SfoI	GGCGCC	1 cut(s)	752
Sfr303I	CCGCGG	1 cut(s)	361
SgrBI	CCGCGG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	1634
SmiI	ATTTAAAT	1 cut(s)	1396
SmiMI	CAYNNNNRTG	2 cut(s)	1009, 1572
SmlI	CTYRAG	1 cut(s)	1481
SmoI	CTYRAG	1 cut(s)	1481
SphI	GCATGC	1 cut(s)	1736
Sse9I	AATT	7 cut(s)	235, 328, 829, 1230, 1391, 1412, 1753
SsiI	CCGC	7 cut(s)	358, 360, 451, 470, 563, 936, 1085
SspDI	GGCGCC	1 cut(s)	750
SspI	AATATT	1 cut(s)	865
SspMI	CTAG	1 cut(s)	876
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	9 cut(s)	136, 188, 248, 281, 323, 341, 506, 1038, 1268
StyI	CCWWGG	1 cut(s)	276
SwaI	ATTTAAAT	1 cut(s)	1396
TaaI	ACNGT	4 cut(s)	389, 800, 1008, 1153
TaiI	ACGT	3 cut(s)	351, 707, 1432
TaqI	TCGA	5 cut(s)	294, 459, 552, 1434, 1455
TasI	AATT	7 cut(s)	235, 328, 829, 1230, 1391, 1412, 1753
TatI	WGTACW	1 cut(s)	1650
TauI	GCSGC	6 cut(s)	360, 454, 472, 565, 939, 1087
TfiI	GAWTC	2 cut(s)	4, 1129
Tru1I	TTAA	4 cut(s)	1052, 1346, 1395, 1607
Tru9I	TTAA	4 cut(s)	1052, 1346, 1395, 1607
TscAI	CASTG	3 cut(s)	418, 805, 1011
TseI	GCWGC	8 cut(s)	632, 968, 1249, 1477, 1595, 1688, 1691, 1736
TspDTI	ATGAA	9 cut(s)	16, 224, 642, 935, 1121, 1160, 1259, 1698, 1728
TspGWI	ACGGA	2 cut(s)	232, 1626
TspRI	CASTG	3 cut(s)	418, 805, 1011
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	1634
XagI	CCTNNNNNAGG	1 cut(s)	1744
XapI	RAATTY	5 cut(s)	235, 328, 829, 1412, 1753
XceI	RCATGY	2 cut(s)	1356, 1736
XmiI	GTMKAC	2 cut(s)	67, 1455
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	1 cut(s)	876
Zsp2I	ATGCAT	2 cut(s)	1297, 1354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.