Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037609.1

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Reverse (-)

8062 .. 9154

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgattagtgaatttggcattgagccacgtatcgaacactatgcctcccttgtcgacatcattggtcggcatgggcagcttgaggaggctcacgatttgatcaatagtatgccatttgaacctgataaggctgtgtggggagcattattaggtgcttgtagagtgcataacaatgtagagttggcaaaagttgcagctgaagcattaacaagacttgaacctgaaagctcaggtccgtatgtattgttgtacaatatgtatgctgatgccggactatgggatgaagcagcagctgtgagatcgctgatggatgaaaacaagataacaaagcatgctgcctatagtagggttgaattttcagtattccaagaccttcctcacttgccaactccattgagaacctttactgttcacagaatcgactatgacaatacatcagcctggataaaatatgactcaagtaaggatctctatcatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

160

Amino Acids

18.15

Weight (kDa)

5.08

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	11, 353
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	276, 345
AgsI	TTSAA	3 cut(s)	119, 218, 353
AjnI	CCWGG	1 cut(s)	440
AluBI	AGCT	4 cut(s)	79, 197, 228, 293
AluI	AGCT	4 cut(s)	79, 197, 228, 293
AlwI	GGATC	1 cut(s)	474
AlwNI	CAGNNNCTG	1 cut(s)	293
ApeKI	GCWGC	5 cut(s)	76, 194, 287, 290, 335
ApoI	RAATTY	2 cut(s)	11, 353
AspS9I	GGNCC	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	233
BbvI	GCAGC	5 cut(s)	88, 206, 299, 302, 322
BccI	CCATC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciT130I	CCWGG	1 cut(s)	442
BclI	TGATCA	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	5 cut(s)	77, 195, 288, 291, 336
BlsI	GCNGC	5 cut(s)	78, 196, 289, 292, 337
Bme1390I	CCNGG	1 cut(s)	442
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	442
BmsI	GCATC	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	2 cut(s)	101, 442
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 345
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	286, 316
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	276, 345
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	5 cut(s)	88, 206, 299, 302, 322
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	276, 345
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	99, 299, 466
BspCNI	CTCAG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	475
BspPI	GGATC	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	249
BssMI	GATC	3 cut(s)	99, 299, 466
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	409
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	286, 316
BstKTI	GATC	3 cut(s)	102, 302, 469
BstMBI	GATC	3 cut(s)	99, 299, 466
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 191, 200
BstNI	CCWGG	1 cut(s)	442
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	5 cut(s)	88, 206, 299, 302, 322
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	286, 316
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	71, 332, 476
CviJI	RGCY	8 cut(s)	25, 79, 89, 131, 197, 228, 293, 440
CviKI_1	RGCY	8 cut(s)	25, 79, 89, 131, 197, 228, 293, 440
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	3 cut(s)	101, 301, 468
DpnII	GATC	3 cut(s)	99, 299, 466
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	440
FaeI	CATG	3 cut(s)	74, 335, 479
FatI	CATG	3 cut(s)	70, 331, 475
FbaI	TGATCA	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	5 cut(s)	77, 195, 288, 291, 336
FokI	GGATG	2 cut(s)	293, 323
Fsp4HI	GCNGC	5 cut(s)	77, 195, 288, 291, 336
GluI	GCNGC	5 cut(s)	77, 195, 288, 291, 336
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	3 cut(s)	74, 335, 479
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	417, 455
HpaII	CCGG	1 cut(s)	270
Hpy166II	GTNNAC	2 cut(s)	55, 412
Hpy188III	TCNNGA	2 cut(s)	92, 476
Hpy8I	GTNNAC	2 cut(s)	55, 412
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	166, 194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 191, 200
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	74, 335, 479
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	99, 299, 466
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	6 cut(s)	135, 216, 234, 283, 427, 454
Lsp1109I	GCAGC	5 cut(s)	88, 206, 299, 302, 322
LweI	GCATC	1 cut(s)	256
MaeII	ACGT	1 cut(s)	28
MalI	GATC	3 cut(s)	101, 301, 468
MboI	GATC	3 cut(s)	99, 299, 466
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	2 cut(s)	11, 353
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	4 cut(s)	55, 76, 79, 387
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	197, 293
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	3 cut(s)	76, 191, 200
NdeII	GATC	3 cut(s)	99, 299, 466
NlaIII	CATG	3 cut(s)	74, 335, 479
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PagI	TCATGA	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	417
PkrI	GCNGC	5 cut(s)	78, 196, 289, 292, 337
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	466
PvuII	CAGCTG	2 cut(s)	197, 293
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	5 cut(s)	77, 195, 288, 291, 336
Sau3AI	GATC	3 cut(s)	99, 299, 466
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	80, 457
SmoI	CTYRAG	2 cut(s)	80, 457
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	2 cut(s)	11, 353
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	3 cut(s)	33, 54, 420
TasI	AATT	2 cut(s)	11, 353
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseI	GCWGC	5 cut(s)	76, 194, 287, 290, 335
TspDTI	ATGAA	2 cut(s)	297, 327
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	2 cut(s)	11, 353
XceI	RCATGY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.