Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Reverse (-)

44215515 .. 44225597

Gene Structure 10083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

ATGCCCCGAGCTCGTATTATTCTTCGTCTACTCACCATCCCATTACCCAATAATCACGCATCCCCACAGCACTCTTGTTTTGCCTCAACTTCAAAACCCAGTAGTCATGCCAAAGACGTAGACCTTTTTTCACTGAACAGAAGGATCTCCCATTTGATCCGAACTGGTCAGATAGAGCAAGCCAGGGAAGCCTTTGACAAGATGAAGCAACGGAATATCGTTACTTGGAATTCAATGATAACCGGGTATGTGAAACGCCGAGAGATGGCCAAGGCCCGGAAGCTGTTCGACGAAATGCCTGACAGAGACGTTGTGTCCTGGAATTTGATGATATCCGGGTACGTTTCGTGCCGCGGAAGTCGTCGGTATGTTGAGGAGGGCAGGACTTTGTTTGATCAGATGCCGCTGAGGGACTGTGTTTCTTGGAACACAATGATCAGTGGGTACGCCAAGAATGGGAGGATGGGGGAGGCATTGCGGCTTTTCGATGCCATGCCGCAGAGGAGTGTTGTTTCTTGGAATGCAATGGTTACCGGGTTTCTACAGAATGGCCATGTTGCGCGTGCGTTTGAGTTTTTCGAGAGAATGCCGCAGAGGGATGGGGCTTCTTTTAGTGCACTCGTGTCGGGGCTTATTCAGAATGGTGAGCTGGATGAAGCTGCGAGGATTGTTGGCGAATGTGGGAAGAGGGATGAGGAGGGGGTGGAAGATTTGGTGGATGCTTATAATACGTTGGTTGCTGGTTATGGTCAGAGAGGAAGGGTTGAAGAGGCTCGGCGCCTTTTTGATCAAATACCATTTCGTCGTGAGAAGGGGAATGAGGACAGTGGGAGGTTTGAGAGGAATTTTGTATCGTGGAATTCTATGATTATGTGCTATGTGAAAACAGGAGATATTGTTTCTGCTAGAGAACTTTTTGACCAAATGATAGAACGAGATACCTTTTCGTGGAATACCATGATCAGCGGCTATGTTCATATGTCAGATATGGAAGAGGCTGCCAATCTCTTTCGTAGAATGCCAAATCCTGATACACTGTCATGGAATGCAATGATTTTAGGGTATGCCCAGGTTGGGCGTTTAAAACTGGCTCATGATTTTTTTGAGAGGATGCCGCACAAGAGTCTAATATCTTGGAACTCCATGATAGCAGGGTATGAGAAAAATGAGGACTTTATGGGTGGAGTTAAGCTTTTCTCTCAGATGCAACTAGAAGGAGAGAAACCTGATAGACACACTTTATCATCAGTTGTTAGTGTGAGTACTGGGTTAGCGGATCTGCATCTAGGCATGCAGATTCATCAGCTGGTCATGAAGACAGTTATTGCAGATTTGCCAATTAACAACTCTCTTATAACTATGTATTCACGATGTGGTGCTATCAAAGAGGCAGAAACAATTTTTGATGAGATGAAACAGCAGAAAGATGTGATCTCCTGGAATGCAATGATTGGGGGCTATGCATCTCATGGTTTTGCTGCAGAGGCTTTAGGACTTTTTTGTTTGATGAAGAGGTCAAAGGTGCAACCTACATATATAACATTTATTGCAGTTTTAAATGCATGTGCTCATGCAGGATTAGTTGAAGAAGGCCGGAGTCAATTTAAATCCATGATTAGTGAATTTGGTATTGAGCCACGTATCGAACACTATGCCTCCCTTGTCGACATCATTGGTCGGCATGGGCAGCTTGAGGAGGCTCACGATTTGATCAACAGTATGCCATTTGAACCTGATAAGGCTGTGTGGGGAGCATTATTAGGTGCTTGTAGAGTGCATAACAATGTAGAGTTGGCAAAAGTTGCAGCTGAAGCATTAACAAGACTTGAACCTGAAAGCTCAGGTCCGTATGTATTGTTGTACAATATGTATGCTGATGCCAGACTATGGGATGAAGCAGCAGCTGTGAGATCGCTGATGGATGAAAACAAGATAACAAAGCATGCTGCTTATAGTAGGGTAAATTCTTCGCATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

659

Amino Acids

74.58

Weight (kDa)

6.57

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	71 - 103	4.8e-09	PPR repeat family
PPR	PF01535	74 - 103	5.2e-08	PPR repeat
PPR_2	PF13041	138 - 170	1.5e-08	PPR repeat family
PPR_1	PF12854	138 - 165	2.2e-08	PPR repeat
PPR	PF01535	140 - 168	1.2e-09	PPR repeat
PPR_2	PF13041	169 - 199	5.2e-06	PPR repeat family
PPR	PF01535	284 - 312	4.8e-08	PPR repeat
PPR	PF01535	315 - 340	1.5e-06	PPR repeat
PPR_2	PF13041	376 - 418	2.6e-07	PPR repeat family
PPR_2	PF13041	475 - 524	7.2e-10	PPR repeat family
PPR	PF01535	478 - 507	4.6e-07	PPR repeat
E_motif	PF20431	593 - 652	1.2e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	726, 1355
AccB1I	GGYRCC	1 cut(s)	777
AccB7I	CCANNNNNTGG	1 cut(s)	1887
AccI	GTMKAC	3 cut(s)	28, 120, 1665
AccII	CGCG	2 cut(s)	354, 562
AciI	CCGC	9 cut(s)	352, 354, 404, 478, 497, 590, 966, 1115, 1274
AclWI	GGATC	3 cut(s)	151, 152, 1284
AcoI	YGGCCR	2 cut(s)	267, 550
AcsI	RAATTY	6 cut(s)	229, 322, 844, 859, 1622, 1963
AcuI	CTGAAG	1 cut(s)	1830
AcyI	GRCGYC	1 cut(s)	778
AdeI	CACNNNGTG	1 cut(s)	1373
AfaI	GTAC	4 cut(s)	341, 446, 1264, 1862
AfiI	CCNNNNNNNGG	6 cut(s)	265, 276, 456, 948, 1074, 1887
AgsI	TTSAA	6 cut(s)	93, 234, 767, 1586, 1730, 1829
AhdI	GACNNNNNGTC	1 cut(s)	313
AjnI	CCWGG	4 cut(s)	182, 317, 1068, 1436
Alw21I	GWGCWC	3 cut(s)	13, 619, 1570
Alw26I	GTCTC	1 cut(s)	300
Alw44I	GTGCAC	1 cut(s)	615
AlwI	GGATC	3 cut(s)	151, 152, 1284
AlwNI	CAGNNNCTG	1 cut(s)	1904
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	4 cut(s)	267, 273, 550, 1591
ApaLI	GTGCAC	1 cut(s)	615
ApeKI	GCWGC	8 cut(s)	659, 998, 1478, 1687, 1805, 1898, 1901, 1946
ApoI	RAATTY	6 cut(s)	229, 322, 844, 859, 1622, 1963
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	562, 780
AspS9I	GGNCC	2 cut(s)	274, 1844
AsuC2I	CCSGG	4 cut(s)	244, 277, 337, 535
AsuHPI	GGTGA	2 cut(s)	25, 656
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	1844
BaeGI	GKGCMC	1 cut(s)	619
BalI	TGGCCA	2 cut(s)	269, 552
BanI	GGYRCC	1 cut(s)	777
BanII	GRGCYC	1 cut(s)	13
BauI	CACGAG	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	1322
Bbv12I	GWGCWC	3 cut(s)	13, 619, 1570
BbvCI	CCTCAGC	1 cut(s)	407
BbvI	GCAGC	8 cut(s)	646, 985, 1465, 1699, 1817, 1910, 1913, 1933
BccI	CCATC	5 cut(s)	44, 259, 457, 593, 1912
BcgI	CGANNNNNNTGC	4 cut(s)	606, 640, 1634, 1668
BciT130I	CCWGG	4 cut(s)	184, 319, 1070, 1438
BclI	TGATCA	5 cut(s)	394, 435, 787, 960, 1710
BcnI	CCSGG	4 cut(s)	244, 277, 337, 535
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	3 cut(s)	906, 1211, 1286
BfmI	CTRYAG	2 cut(s)	542, 1479
BfoI	RGCGCY	1 cut(s)	781
BmcAI	AGTACT	1 cut(s)	1264
Bme1390I	CCNGG	8 cut(s)	184, 244, 277, 319, 337, 535, 1070, 1438
Bme18I	GGWCC	1 cut(s)	1844
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	274, 1844
BmiI	GGNNCC	1 cut(s)	779
BmrFI	CCNGG	8 cut(s)	184, 244, 277, 319, 337, 535, 1070, 1438
BmrI	ACTGGG	2 cut(s)	93, 1275
BmsI	GCATC	9 cut(s)	68, 390, 478, 709, 1101, 1194, 1291, 1472, 1867
BmuI	ACTGGG	2 cut(s)	93, 1275
BpiI	GAAGAC	1 cut(s)	1322
Bpu10I	CCTNAGC	2 cut(s)	407, 1840
BpuEI	CTTGAG	1 cut(s)	1712
BpuMI	CCSGG	4 cut(s)	244, 277, 337, 535
BsaAI	YACGTR	1 cut(s)	1640
BsaBI	GATNNNNATC	1 cut(s)	1281
BsaHI	GRCGYC	1 cut(s)	778
BsaJI	CCNNGG	4 cut(s)	183, 270, 352, 1068
BsaXI	ACNNNNNCTCC	4 cut(s)	882, 912, 1640, 1670
Bsc4I	CCNNNNNNNGG	6 cut(s)	265, 276, 456, 948, 1074, 1887
Bse1I	ACTGG	4 cut(s)	99, 169, 1092, 1270
Bse3DI	GCAATG	5 cut(s)	473, 531, 1056, 1452, 1972
Bse8I	GATNNNNATC	1 cut(s)	1281
BseBI	CCWGG	4 cut(s)	184, 319, 1070, 1438
BseDI	CCNNGG	4 cut(s)	183, 270, 352, 1068
BseJI	GATNNNNATC	1 cut(s)	1281
BseLI	CCNNNNNNNGG	6 cut(s)	265, 276, 456, 948, 1074, 1887
BseMI	GCAATG	5 cut(s)	473, 531, 1056, 1452, 1972
BseMII	CTCAG	3 cut(s)	398, 1214, 1854
BseNI	ACTGG	4 cut(s)	99, 169, 1092, 1270
BseRI	GAGGAG	4 cut(s)	389, 517, 710, 1709
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	8 cut(s)	646, 985, 1465, 1699, 1817, 1910, 1913, 1933
Bsh1236I	CGCG	2 cut(s)	354, 562
BshFI	GGCC	4 cut(s)	269, 275, 552, 1593
BshNI	GGYRCC	1 cut(s)	777
BsiHKAI	GWGCWC	3 cut(s)	13, 619, 1570
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	5 cut(s)	243, 277, 336, 534, 1594
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	6 cut(s)	265, 276, 456, 948, 1074, 1887
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	5 cut(s)	526, 591, 1023, 1051, 1447
BsnI	GGCC	4 cut(s)	269, 275, 552, 1593
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	3 cut(s)	13, 619, 1570
Bsp1407I	TGTACA	1 cut(s)	1860
BspACI	CCGC	9 cut(s)	352, 354, 404, 478, 497, 590, 966, 1115, 1274
BspANI	GGCC	4 cut(s)	269, 275, 552, 1593
BspCNI	CTCAG	3 cut(s)	399, 1213, 1853
BspFNI	CGCG	2 cut(s)	354, 562
BspHI	TCATGA	2 cut(s)	1093, 1311
BspLI	GGNNCC	1 cut(s)	779
BspMAI	CTGCAG	1 cut(s)	1483
BspPI	GGATC	3 cut(s)	151, 152, 1284
BspT107I	GGYRCC	1 cut(s)	777
BsrDI	GCAATG	5 cut(s)	473, 531, 1056, 1452, 1972
BsrGI	TGTACA	1 cut(s)	1860
BsrI	ACTGG	4 cut(s)	99, 169, 1092, 1270
BssECI	CCNNGG	4 cut(s)	183, 270, 352, 1068
BssNI	GRCGYC	1 cut(s)	778
BssSI	CACGAG	1 cut(s)	620
BssT1I	CCWWGG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	620
Bst2UI	CCWGG	4 cut(s)	184, 319, 1070, 1438
Bst4CI	ACNGT	5 cut(s)	416, 827, 1038, 1321, 1718
Bst6I	CTCTTC	4 cut(s)	680, 762, 987, 1505
BstACI	GRCGYC	1 cut(s)	778
BstAPI	GCANNNNNTGC	1 cut(s)	1802
BstAUI	TGTACA	1 cut(s)	1860
BstBAI	YACGTR	1 cut(s)	1640
BstC8I	GCNNGC	4 cut(s)	180, 564, 1292, 1944
BstDEI	CTNAG	3 cut(s)	407, 1200, 1840
BstDSI	CCRYGG	1 cut(s)	352
BstEII	GGTNACC	1 cut(s)	529
BstFNI	CGCG	2 cut(s)	354, 562
BstH2I	RGCGCY	1 cut(s)	781
BstHHI	GCGC	2 cut(s)	562, 780
BstMAI	GTCTC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 1484, 1687, 1802, 1811
BstNI	CCWGG	4 cut(s)	184, 319, 1070, 1438
BstNSI	RCATGY	3 cut(s)	1294, 1566, 1946
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	8 cut(s)	182, 242, 275, 317, 335, 533, 1068, 1436
BstSFI	CTRYAG	2 cut(s)	542, 1479
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	2 cut(s)	354, 562
BstV1I	GCAGC	8 cut(s)	646, 985, 1465, 1699, 1817, 1910, 1913, 1933
BstV2I	GAAGAC	1 cut(s)	1322
BstX2I	RGATCY	2 cut(s)	144, 1276
BstYI	RGATCY	2 cut(s)	144, 1276
BsuRI	GGCC	4 cut(s)	269, 275, 552, 1593
BtgI	CCRYGG	1 cut(s)	352
BtsIMutI	CAGTG	4 cut(s)	131, 445, 832, 1034
Cac8I	GCNNGC	4 cut(s)	180, 564, 1292, 1944
CaiI	CAGNNNCTG	1 cut(s)	1904
CciI	TCATGA	2 cut(s)	1093, 1311
CfoI	GCGC	2 cut(s)	562, 780
Cfr13I	GGNCC	2 cut(s)	274, 1844
Cfr42I	CCGCGG	1 cut(s)	355
Csp6I	GTAC	4 cut(s)	340, 445, 1263, 1861
CviQI	GTAC	4 cut(s)	340, 445, 1263, 1861
DdeI	CTNAG	3 cut(s)	407, 1200, 1840
DinI	GGCGCC	1 cut(s)	779
DraI	TTTAAA	3 cut(s)	1083, 1557, 1606
DraIII	CACNNNGTG	1 cut(s)	1373
DriI	GACNNNNNGTC	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	267, 550
Eam1104I	CTCTTC	4 cut(s)	680, 762, 987, 1505
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	4 cut(s)	680, 762, 987, 1505
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	1844
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	1830
Eco88I	CYCGRG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	529
EcoRI	GAATTC	2 cut(s)	229, 859
EcoRII	CCWGG	4 cut(s)	182, 317, 1068, 1436
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	2 cut(s)	1465, 1564
EcoT38I	GRGCYC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	779
EheI	GGCGCC	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	300
FaqI	GGGAC	1 cut(s)	425
FauNDI	CATATG	1 cut(s)	978
FbaI	TGATCA	5 cut(s)	394, 435, 787, 960, 1710
FblI	GTMKAC	3 cut(s)	28, 120, 1665
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	3 cut(s)	906, 1211, 1286
GlaI	GCGC	2 cut(s)	561, 779
HaeII	RGCGCY	1 cut(s)	781
HaeIII	GGCC	4 cut(s)	269, 275, 552, 1593
HapII	CCGG	5 cut(s)	243, 277, 336, 534, 1594
HhaI	GCGC	2 cut(s)	562, 780
Hin1I	GRCGYC	1 cut(s)	778
Hin6I	GCGC	2 cut(s)	560, 778
HinP1I	GCGC	2 cut(s)	560, 778
HincII	GTYRAC	1 cut(s)	1666
HindII	GTYRAC	1 cut(s)	1666
HindIII	AAGCTT	1 cut(s)	1190
HinfI	GANTC	3 cut(s)	1123, 1297, 1597
HpaII	CCGG	5 cut(s)	243, 277, 336, 534, 1594
HphI	GGTGA	2 cut(s)	25, 656
Hpy166II	GTNNAC	4 cut(s)	29, 121, 617, 1666
Hpy188I	TCNGA	7 cut(s)	161, 171, 399, 639, 753, 985, 1203
Hpy188III	TCNNGA	7 cut(s)	580, 806, 1028, 1094, 1312, 1368, 1703
Hpy8I	GTNNAC	4 cut(s)	29, 121, 617, 1666
Hpy99I	CGWCG	3 cut(s)	293, 366, 807
HpyAV	CCTTC	5 cut(s)	135, 753, 805, 1208, 1583
HpyCH4III	ACNGT	5 cut(s)	416, 827, 1038, 1321, 1718
HpyCH4IV	ACGT	5 cut(s)	117, 309, 342, 731, 1639
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 1484, 1687, 1802, 1811
HpyF3I	CTNAG	3 cut(s)	407, 1200, 1840
HpySE526I	ACGT	5 cut(s)	117, 309, 342, 731, 1639
Hsp92I	GRCGYC	1 cut(s)	778
HspAI	GCGC	2 cut(s)	560, 778
KasI	GGCGCC	1 cut(s)	777
Ksp22I	TGATCA	5 cut(s)	394, 435, 787, 960, 1710
KspI	CCGCGG	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	1751
Lsp1109I	GCAGC	8 cut(s)	646, 985, 1465, 1699, 1817, 1910, 1913, 1933
LweI	GCATC	9 cut(s)	68, 390, 478, 709, 1101, 1194, 1291, 1472, 1867
MaeI	CTAG	3 cut(s)	906, 1211, 1286
MaeII	ACGT	5 cut(s)	117, 309, 342, 731, 1639
MaeIII	GTNAC	2 cut(s)	220, 529
MboII	GAAGA	9 cut(s)	14, 697, 719, 779, 1004, 1327, 1522, 1598, 1959
MflI	RGATCY	2 cut(s)	144, 1276
MhlI	GDGCHC	3 cut(s)	13, 619, 1570
MlsI	TGGCCA	2 cut(s)	269, 552
MluCI	AATT	9 cut(s)	229, 322, 844, 859, 1338, 1398, 1601, 1622, 1963
MluNI	TGGCCA	2 cut(s)	269, 552
Mly113I	GGCGCC	1 cut(s)	778
MlyI	GAGTC	2 cut(s)	1132, 1606
Mox20I	TGGCCA	2 cut(s)	269, 552
Mph1103I	ATGCAT	2 cut(s)	1465, 1564
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	2 cut(s)	269, 552
MseI	TTAA	6 cut(s)	1082, 1188, 1341, 1556, 1605, 1817
MslI	CAYNNNNRTG	2 cut(s)	1039, 1782
Msp20I	TGGCCA	2 cut(s)	269, 552
MspA1I	CMGCKG	6 cut(s)	354, 406, 966, 1306, 1808, 1904
MspI	CCGG	5 cut(s)	243, 277, 336, 534, 1594
MspR9I	CCNGG	8 cut(s)	184, 244, 277, 319, 337, 535, 1070, 1438
Mva1269I	GAATGC	5 cut(s)	526, 591, 1023, 1051, 1447
MvaI	CCWGG	4 cut(s)	184, 319, 1070, 1438
MvnI	CGCG	2 cut(s)	354, 562
MwoI	GCNNNNNNNGC	5 cut(s)	188, 1484, 1687, 1802, 1811
NarI	GGCGCC	1 cut(s)	778
NciI	CCSGG	4 cut(s)	244, 277, 337, 535
NdeI	CATATG	1 cut(s)	978
NlaIV	GGNNCC	1 cut(s)	779
NmeAIII	GCCGAG	2 cut(s)	284, 754
NsiI	ATGCAT	2 cut(s)	1465, 1564
NspI	RCATGY	3 cut(s)	1294, 1566, 1946
PaeI	GCATGC	2 cut(s)	1294, 1946
PagI	TCATGA	2 cut(s)	1093, 1311
PctI	GAATGC	5 cut(s)	526, 591, 1023, 1051, 1447
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	1297
PflMI	CCANNNNNTGG	1 cut(s)	1887
PfoI	TCCNGGA	2 cut(s)	317, 1436
PleI	GAGTC	2 cut(s)	1131, 1605
PluTI	GGCGCC	1 cut(s)	781
PpsI	GAGTC	2 cut(s)	1131, 1605
Ppu21I	YACGTR	1 cut(s)	1640
PsiI	TTATAA	2 cut(s)	726, 1355
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	4 cut(s)	182, 317, 1068, 1436
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	4 cut(s)	182, 317, 1068, 1436
PspN4I	GGNNCC	1 cut(s)	779
PspPI	GGNCC	2 cut(s)	274, 1844
PstI	CTGCAG	1 cut(s)	1483
PstNI	CAGNNNCTG	1 cut(s)	1904
PsuI	RGATCY	2 cut(s)	144, 1276
PvuII	CAGCTG	3 cut(s)	1306, 1808, 1904
RsaI	GTAC	4 cut(s)	341, 446, 1264, 1862
RsaNI	GTAC	4 cut(s)	340, 445, 1263, 1861
RseI	CAYNNNNRTG	2 cut(s)	1039, 1782
SacI	GAGCTC	1 cut(s)	13
SacII	CCGCGG	1 cut(s)	355
SalI	GTCGAC	1 cut(s)	1664
SaqAI	TTAA	6 cut(s)	1082, 1188, 1341, 1556, 1605, 1817
Sau96I	GGNCC	2 cut(s)	274, 1844
ScaI	AGTACT	1 cut(s)	1264
SchI	GAGTC	2 cut(s)	1132, 1606
ScrFI	CCNGG	8 cut(s)	184, 244, 277, 319, 337, 535, 1070, 1438
SduI	GDGCHC	3 cut(s)	13, 619, 1570
SfaNI	GCATC	9 cut(s)	68, 390, 478, 709, 1101, 1194, 1291, 1472, 1867
SfcI	CTRYAG	2 cut(s)	542, 1479
SfoI	GGCGCC	1 cut(s)	779
Sfr303I	CCGCGG	1 cut(s)	355
SgrBI	CCGCGG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	1844
SmiI	ATTTAAAT	1 cut(s)	1606
SmiMI	CAYNNNNRTG	2 cut(s)	1039, 1782
SmlI	CTYRAG	1 cut(s)	1691
SmoI	CTYRAG	1 cut(s)	1691
SphI	GCATGC	2 cut(s)	1294, 1946
Sse9I	AATT	9 cut(s)	229, 322, 844, 859, 1338, 1398, 1601, 1622, 1963
SsiI	CCGC	9 cut(s)	352, 354, 404, 478, 497, 590, 966, 1115, 1274
SspDI	GGCGCC	1 cut(s)	777
SspMI	CTAG	3 cut(s)	906, 1211, 1286
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	8 cut(s)	182, 242, 275, 317, 335, 533, 1068, 1436
StyI	CCWWGG	1 cut(s)	270
SwaI	ATTTAAAT	1 cut(s)	1606
TaaI	ACNGT	5 cut(s)	416, 827, 1038, 1321, 1718
TaiI	ACGT	5 cut(s)	120, 312, 345, 734, 1642
TaqI	TCGA	5 cut(s)	288, 486, 579, 1644, 1665
TasI	AATT	9 cut(s)	229, 322, 844, 859, 1338, 1398, 1601, 1622, 1963
TatI	WGTACW	2 cut(s)	1262, 1860
TauI	GCSGC	7 cut(s)	354, 406, 481, 499, 592, 969, 1117
TfiI	GAWTC	1 cut(s)	1297
Tru1I	TTAA	6 cut(s)	1082, 1188, 1341, 1556, 1605, 1817
Tru9I	TTAA	6 cut(s)	1082, 1188, 1341, 1556, 1605, 1817
TscAI	CASTG	4 cut(s)	138, 445, 832, 1041
TseI	GCWGC	8 cut(s)	659, 998, 1478, 1687, 1805, 1898, 1901, 1946
TspDTI	ATGAA	9 cut(s)	218, 669, 965, 1289, 1328, 1427, 1523, 1908, 1938
TspGWI	ACGGA	2 cut(s)	226, 1836
TspRI	CASTG	4 cut(s)	138, 445, 832, 1041
Van91I	CCANNNNNTGG	1 cut(s)	1887
VneI	GTGCAC	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	1844
XapI	RAATTY	6 cut(s)	229, 322, 844, 859, 1622, 1963
XceI	RCATGY	3 cut(s)	1294, 1566, 1946
XmiI	GTMKAC	3 cut(s)	28, 120, 1665
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	3 cut(s)	906, 1211, 1286
ZrmI	AGTACT	1 cut(s)	1264
Zsp2I	ATGCAT	2 cut(s)	1465, 1564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.