Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Forward (+)

56920017 .. 56920701

Gene Structure 685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATAGAACGAGATACCTTTTCTTGGAATACCCTGATCAGTGGCTGTGTACATATGTCAGATATGGAAGAGGCGTCCAAGCTCTTTCAGGAAATGCCAAATCGTGATACACTGTCATGGAATTCAATGATCTTAGGGTATGCCCAGGTTGGATATGAGAAAAATGAGAACTTCATAGGAGCCGTGAAGCTCTTTGCTCAGATGCAACTCAAAGCAGAGAAACCTGATAGACACACTTTATCTTCAGTTCTTGGTGTGTGTGTACTGGGTTGGTGGATCTGCATCTTGGCATGCAGATTCATCTGCTTGTCACGAAGACAGTTATGGCTTATTGCAGATTTGCCAATAAACAATGCCCTTATAACTATGTATTCACGATGTGGTGCGATAGAGGAGGCGCAAACAATTTTTGATGAGATGAAATGGGAGAAAAATGTCATCTTGTGGAATGCAATGATCGGATGCTACGCATCTCATGGTTTTGCTGCAGAGGCTTTAGAACTTTTCGCTTTGATGAAGAGGTTAAAGGTGCGACCTACTTATATAACATTTATTGCAGTGTTAAATGCGTGTGCTCATGCAGGATTAGCTGAACAAGGGCGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

202

Amino Acids

23.02

Weight (kDa)

6.88

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 35	9.3e-08	PPR repeat family
PPR	PF01535	7 - 35	7.5e-08	PPR repeat
PPR_2	PF13041	144 - 193	1.9e-09	PPR repeat family
PPR_3	PF13812	145 - 191	7.1e-06	Pentatricopeptide repeat domain
PPR	PF01535	148 - 176	8.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AciI	CCGC	1 cut(s)	601
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	51, 264
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	3 cut(s)	82, 190, 590
AluI	AGCT	3 cut(s)	82, 190, 590
Alw21I	GWGCWC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	472
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	4 cut(s)	192, 291, 452, 479
BmuI	ACTGGG	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	467
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	577
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	36, 129, 276, 456
BspACI	CCGC	1 cut(s)	601
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	4 cut(s)	36, 129, 276, 456
BssNI	GRCGYC	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	114, 321
Bst6I	CTCTTC	2 cut(s)	63, 512
BstACI	GRCGYC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	133, 198
BstF5I	GGATG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	4 cut(s)	39, 132, 279, 459
BstMBI	GATC	4 cut(s)	36, 129, 276, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 587
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	467
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	3 cut(s)	46, 110, 564
Cac8I	GCNNGC	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	45
CfoI	GCGC	1 cut(s)	400
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	50, 263
CviAII	CATG	4 cut(s)	117, 291, 476, 578
CviJI	RGCY	7 cut(s)	45, 82, 182, 190, 328, 494, 590
CviKI_1	RGCY	7 cut(s)	45, 82, 182, 190, 328, 494, 590
CviQI	GTAC	2 cut(s)	50, 263
DdeI	CTNAG	2 cut(s)	133, 198
DpnI	GATC	4 cut(s)	38, 131, 278, 458
DpnII	GATC	4 cut(s)	36, 129, 276, 456
DraIII	CACNNNGTG	1 cut(s)	380
Eam1104I	CTCTTC	2 cut(s)	63, 512
EarI	CTCTTC	2 cut(s)	63, 512
Eco57I	CTGAAG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	120, 294, 479, 581
FatI	CATG	4 cut(s)	116, 290, 475, 577
FauNDI	CATATG	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	486
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	486
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	120, 294, 479, 581
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	1 cut(s)	297
Hpy166II	GTNNAC	2 cut(s)	50, 263
Hpy188I	TCNGA	3 cut(s)	61, 201, 461
Hpy188III	TCNNGA	4 cut(s)	89, 104, 312, 375
Hpy8I	GTNNAC	2 cut(s)	50, 263
HpyCH4III	ACNGT	2 cut(s)	114, 321
HpyCH4V	TGCA	8 cut(s)	205, 282, 294, 335, 452, 488, 557, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 587
HpyF3I	CTNAG	2 cut(s)	133, 198
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	120, 294, 479, 581
HspAI	GCGC	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	36, 129, 276, 456
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	7 cut(s)	47, 74, 131, 158, 237, 251, 567
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	4 cut(s)	192, 291, 452, 479
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	4 cut(s)	38, 131, 278, 458
MboI	GATC	4 cut(s)	36, 129, 276, 456
MboII	GAAGA	4 cut(s)	80, 234, 327, 529
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	2 cut(s)	121, 405
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	6 cut(s)	64, 385, 388, 484, 513, 597
MseI	TTAA	2 cut(s)	524, 563
MslI	CAYNNNNRTG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	491, 587
NdeI	CATATG	1 cut(s)	54
NdeII	GATC	4 cut(s)	36, 129, 276, 456
NlaIII	CATG	4 cut(s)	120, 294, 479, 581
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	487
PsiI	TTATAA	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	2 cut(s)	51, 264
RsaNI	GTAC	2 cut(s)	50, 263
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	524, 563
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	4 cut(s)	36, 129, 276, 456
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	4 cut(s)	192, 291, 452, 479
SfcI	CTRYAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	115
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	2 cut(s)	121, 405
SsiI	CCGC	1 cut(s)	601
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	114, 321
TasI	AATT	2 cut(s)	121, 405
TatI	WGTACW	2 cut(s)	49, 262
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	524, 563
Tru9I	TTAA	2 cut(s)	524, 563
TscAI	CASTG	3 cut(s)	46, 117, 564
TseFI	GTSAC	1 cut(s)	309
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	309
TspDTI	ATGAA	4 cut(s)	163, 289, 434, 530
TspRI	CASTG	3 cut(s)	46, 117, 564
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.