Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8522155.1

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Forward (+)

1013 .. 2022

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8522155.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgatcagtgcctacgttcatatgtcagatatggaagaggcatacaagctctttcgggaaatgccaaatcgtgatactctgtcatggaattcaatgatcttagggtatgcccaggttggatatgaagaaaatgagaacttcataggagcagttaagctctttgctcagatgcaactcaaaggagagaaacctgatagacacactttatcttcagttcttgatttgccaataaacaatgcccttataactatgtattcacgatgtggtgcgatagaggaggcacaaccaatttttgatgagatgaaatgggagaaaaatgtcatctcgtggaatgcaatgatcggatgctacgcatctcatggttttgctgcagaggctttagagcttttcgctttgatgaagaggtttaaggtgccacctacttatataacatttattgcactgttgaatgcgtgtgctcatgcaggattagctgaagaagggcggaggcaatttaattccatgattagtgactttggtattgagccacgaattgaacagtatgcatcccttgtggacataattggttggcatggacagcttgaggaggctatggatttgatcaatagcatgtcatttgaatttgaagcagataagcctgtgtggggagcattgttaggtgcctgtagagtgcataacaatgcagagttggcaaaagttgcagctgaagcattaatgagacttgaatccgaatgctcagctccatatgtattgttatacaatatgtatgctgatgctgggcaatgtgatgaagcagcagctgtgagactgctgatggataataacaagataattaagcaaaaaggctatagtcaggtagatttttcccagtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

291

Amino Acids

32.78

Weight (kDa)

4.84

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccB1I	GGYRCC	2 cut(s)	412, 659
AciI	CCGC	1 cut(s)	484
AcsI	RAATTY	2 cut(s)	88, 620
AcuI	CTGAAG	3 cut(s)	195, 495, 726
AdeI	CACNNNGTG	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	644
AgsI	TTSAA	6 cut(s)	93, 448, 536, 620, 626, 725
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	8 cut(s)	49, 157, 385, 473, 580, 704, 740, 800
AluI	AGCT	8 cut(s)	49, 157, 385, 473, 580, 704, 740, 800
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	712, 799
AlwNI	CAGNNNCTG	1 cut(s)	800
ApeKI	GCWGC	4 cut(s)	368, 701, 794, 797
ApoI	RAATTY	2 cut(s)	88, 620
AseI	ATTAAT	1 cut(s)	713
BanI	GGYRCC	2 cut(s)	412, 659
BauI	CACGAG	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	4 cut(s)	355, 713, 806, 809
BccI	CCATC	1 cut(s)	808
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	2 cut(s)	3, 600
BcoDI	GTCTC	2 cut(s)	712, 799
BfmI	CTRYAG	3 cut(s)	369, 664, 847
BisI	GCNGC	4 cut(s)	369, 702, 795, 798
BlpI	GCTNAGC	1 cut(s)	736
BlsI	GCNGC	4 cut(s)	370, 703, 796, 799
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	414, 661
BmrFI	CCNGG	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	862
BmsI	GCATC	5 cut(s)	159, 335, 362, 554, 763
BmuI	ACTGGG	1 cut(s)	862
Bpu1102I	GCTNAGC	1 cut(s)	736
BpuEI	CTTGAG	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse1I	ACTGG	1 cut(s)	868
Bse3DI	GCAATG	2 cut(s)	342, 788
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	350, 545
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	2 cut(s)	342, 788
BseMII	CTCAG	2 cut(s)	179, 750
BseNI	ACTGG	1 cut(s)	868
BseRI	GAGGAG	2 cut(s)	290, 599
BseXI	GCAGC	4 cut(s)	355, 713, 806, 809
BseYI	CCCAGC	1 cut(s)	776
BshNI	GGYRCC	2 cut(s)	412, 659
BsiHKAI	GWGCWC	1 cut(s)	460
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	2 cut(s)	712, 799
BsmI	GAATGC	3 cut(s)	337, 454, 737
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	4 cut(s)	3, 96, 339, 600
Bsp1720I	GCTNAGC	1 cut(s)	736
BspACI	CCGC	1 cut(s)	484
BspCNI	CTCAG	2 cut(s)	178, 749
BspLI	GGNNCC	2 cut(s)	414, 661
BspMAI	CTGCAG	1 cut(s)	373
BspT107I	GGYRCC	2 cut(s)	412, 659
BsrDI	GCAATG	2 cut(s)	342, 788
BsrI	ACTGG	1 cut(s)	868
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	4 cut(s)	3, 96, 339, 600
BssSI	CACGAG	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	444, 540
Bst6I	CTCTTC	2 cut(s)	30, 395
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstDEI	CTNAG	3 cut(s)	100, 165, 736
BstF5I	GGATG	2 cut(s)	350, 545
BstKTI	GATC	4 cut(s)	6, 99, 342, 603
BstMAI	GTCTC	2 cut(s)	712, 799
BstMBI	GATC	4 cut(s)	3, 96, 339, 600
BstMWI	GCNNNNNNNGC	6 cut(s)	374, 470, 577, 689, 698, 707
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	3 cut(s)	369, 664, 847
BstV1I	GCAGC	4 cut(s)	355, 713, 806, 809
BtsCI	GGATG	2 cut(s)	350, 545
BtsIMutI	CAGTG	3 cut(s)	13, 440, 875
CaiI	CAGNNNCTG	1 cut(s)	800
CviAII	CATG	6 cut(s)	84, 359, 461, 502, 572, 610
DdeI	CTNAG	3 cut(s)	100, 165, 736
DpnI	GATC	4 cut(s)	5, 98, 341, 602
DpnII	GATC	4 cut(s)	3, 96, 339, 600
DraIII	CACNNNGTG	1 cut(s)	263
Eam1104I	CTCTTC	2 cut(s)	30, 395
EarI	CTCTTC	2 cut(s)	30, 395
EciI	GGCGGA	1 cut(s)	499
Eco57I	CTGAAG	3 cut(s)	195, 495, 726
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	547
FaeI	CATG	6 cut(s)	87, 362, 464, 505, 575, 613
FatI	CATG	6 cut(s)	83, 358, 460, 501, 571, 609
FauNDI	CATATG	2 cut(s)	21, 745
FbaI	TGATCA	2 cut(s)	3, 600
Fnu4HI	GCNGC	4 cut(s)	369, 702, 795, 798
FokI	GGATG	2 cut(s)	357, 532
Fsp4HI	GCNGC	4 cut(s)	369, 702, 795, 798
GluI	GCNGC	4 cut(s)	369, 702, 795, 798
GsaI	CCCAGC	1 cut(s)	780
Hin1II	CATG	6 cut(s)	87, 362, 464, 505, 575, 613
HinfI	GANTC	1 cut(s)	725
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	4 cut(s)	28, 168, 344, 730
Hpy188III	TCNNGA	4 cut(s)	56, 71, 218, 258
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	2 cut(s)	444, 540
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	9 cut(s)	172, 335, 371, 440, 464, 545, 673, 683, 701
HpyF10VI	GCNNNNNNNGC	6 cut(s)	374, 470, 577, 689, 698, 707
HpyF3I	CTNAG	3 cut(s)	100, 165, 736
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	6 cut(s)	87, 362, 464, 505, 575, 613
Ksp22I	TGATCA	2 cut(s)	3, 600
Kzo9I	GATC	4 cut(s)	3, 96, 339, 600
LmnI	GCTCC	3 cut(s)	146, 647, 745
LpnPI	CCDG	8 cut(s)	98, 125, 204, 450, 651, 676, 762, 839
Lsp1109I	GCAGC	4 cut(s)	355, 713, 806, 809
LweI	GCATC	5 cut(s)	159, 335, 362, 554, 763
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	4 cut(s)	5, 98, 341, 602
MboI	GATC	4 cut(s)	3, 96, 339, 600
MboII	GAAGA	5 cut(s)	47, 137, 201, 412, 488
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	8 cut(s)	88, 288, 491, 496, 531, 561, 620, 831
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	8 cut(s)	31, 268, 271, 367, 396, 480, 577, 580
Mph1103I	ATGCAT	1 cut(s)	547
MseI	TTAA	5 cut(s)	153, 408, 495, 713, 834
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	2 cut(s)	704, 800
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	3 cut(s)	337, 454, 737
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	6 cut(s)	374, 470, 577, 689, 698, 707
NdeI	CATATG	2 cut(s)	21, 745
NdeII	GATC	4 cut(s)	3, 96, 339, 600
NlaIII	CATG	6 cut(s)	87, 362, 464, 505, 575, 613
NlaIV	GGNNCC	2 cut(s)	414, 661
NmuCI	GTSAC	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	613
PctI	GAATGC	3 cut(s)	337, 454, 737
PfeI	GAWTC	1 cut(s)	725
PkrI	GCNGC	4 cut(s)	370, 703, 796, 799
PshBI	ATTAAT	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	414, 661
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	800
PvuII	CAGCTG	2 cut(s)	704, 800
RseI	CAYNNNNRTG	1 cut(s)	678
SaqAI	TTAA	5 cut(s)	153, 408, 495, 713, 834
SatI	GCNGC	4 cut(s)	369, 702, 795, 798
Sau3AI	GATC	4 cut(s)	3, 96, 339, 600
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	5 cut(s)	159, 335, 362, 554, 763
SfcI	CTRYAG	3 cut(s)	369, 664, 847
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	8 cut(s)	88, 288, 491, 496, 531, 561, 620, 831
SsiI	CCGC	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	444, 540
TaiI	ACGT	1 cut(s)	18
TasI	AATT	8 cut(s)	88, 288, 491, 496, 531, 561, 620, 831
TfiI	GAWTC	1 cut(s)	725
Tru1I	TTAA	5 cut(s)	153, 408, 495, 713, 834
Tru9I	TTAA	5 cut(s)	153, 408, 495, 713, 834
TscAI	CASTG	3 cut(s)	13, 447, 875
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	4 cut(s)	368, 701, 794, 797
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	6 cut(s)	8, 130, 138, 317, 413, 804
TspRI	CASTG	3 cut(s)	13, 447, 875
VspI	ATTAAT	1 cut(s)	713
XapI	RAATTY	2 cut(s)	88, 620
XceI	RCATGY	1 cut(s)	613
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.