Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Forward (+)

78893398 .. 78896393

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0590700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCACCATCTATAAGCCAAACCATCACAGACCCTTCAGATCTCACTGATTTTGTCATAAACAAAGGCAATGGAGTAAAGGGTCTTTCCCAAATGGGACTCAAAAGCCTCCCAAAGCAATATATCCAACCCCTTGAAGAAAGAATGAGTATGAATATGACAAAAATGCCTGAAGAATCCATTCCCATCATTGACATGTCAAACTGGGAAGACCCGAAAGTGGCAGAATCAATTTGCAATGCGGCAGAGAAGTGGGGGTTCTTTCAGCTACTCAACCATGGTGTGCCCATTGAAGTCCTTGAGCATGTCAAGGAAGCAACTCACAAGTTTTTTGAGATGCCAGCTGAGGAGAAGTGTAAGTTCTCGAAAGAGCATTCGTCTTCAAACAATGTCCGGTTTGGGACAAGCTTTAGTGCTGAAGCAGAGAAGGCACTGGAGTGGAAAGACTGGCTTAGTCTCTTCTATGTTTCTGAGGATGAGGCCTCTGCACACTGGCCTCCACTTTGCAAGGCTGAAGTGCTCGAATACATGAAGAGGACAGACGTACTCATAAAACGACTCCTAGAGATACTGATGAAAAGGCTAAACGTGACAGTAATAAACACAACCAAAGAACCACTTCTAATGGGATCCAGGCGAATTAACCTCAACTACTACCCCGTTTGCCCAAACCCTGAGCTGACAGTTGGAGTTGGGCGTCACTCTGATGTCTCCACACTCACAATCCTCCTTCAAGACTACATCGGAGGGCTTTACGTCCGAGCTGAGACTACTGATGAAGATAGCTGGGTGCATGTTCCTCCATTGGAAGGGTCATTAGTGATCAACGTTGGTGATGCACTGCAAATAATGAGCAATGGAAAATACAAGAGCGTCGAGCATCGAGTGGTTGCTAATGGAAGTAAGACTAGAGTTTCGGTTCCCATATTTGTGAATCCGAGGCCATCGGACGTGATAGGGCCTCTGCCTGAAGTGCTTGAGAGTAGTGGGGAGAAAGCATTGTATAAGCAAGTTCTGTATTCTGACTACGTCAGGCATTTCTTCCGGAAGGCTCATGATGGGAAGAGTACAGTTGACTTTGCCAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

363

Amino Acids

40.95

Weight (kDa)

5.86

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 162	3.2e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 313	6.2e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccIII	TCCGGA	1 cut(s)	1044
AciI	CCGC	1 cut(s)	242
AclI	AACGTT	1 cut(s)	828
AclWI	GGATC	2 cut(s)	624, 637
AcuI	CTGAAG	5 cut(s)	21, 192, 438, 534, 990
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	2 cut(s)	546, 1069
AfiI	CCNNNNNNNGG	2 cut(s)	220, 809
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	137, 293, 384, 734
AjiI	CACGTC	1 cut(s)	952
AjnI	CCWGG	1 cut(s)	632
AleI	CACNNNNGTG	1 cut(s)	436
AluBI	AGCT	6 cut(s)	268, 344, 408, 679, 764, 786
AluI	AGCT	6 cut(s)	268, 344, 408, 679, 764, 786
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	3 cut(s)	461, 715, 761
AlwI	GGATC	2 cut(s)	624, 637
Aor13HI	TCCGGA	1 cut(s)	1044
AoxI	GGCC	4 cut(s)	480, 494, 941, 959
ArsI	GACNNNNNNTTYG	2 cut(s)	898, 930
Asp700I	GAANNNNTTC	2 cut(s)	180, 618
AspS9I	GGNCC	1 cut(s)	959
AsuHPI	GGTGA	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	216, 372
Bbv12I	GWGCWC	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	345
BccI	CCATC	5 cut(s)	16, 32, 194, 952, 1052
BciT130I	CCWGG	1 cut(s)	634
BclI	TGATCA	1 cut(s)	822
BcoDI	GTCTC	3 cut(s)	461, 715, 761
BfaI	CTAG	2 cut(s)	563, 909
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	634
BmgBI	CACGTC	1 cut(s)	952
BmgT120I	GGNCC	1 cut(s)	959
BmiI	GGNNCC	3 cut(s)	6, 631, 921
BmrFI	CCNGG	1 cut(s)	634
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	3 cut(s)	327, 826, 889
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	2 cut(s)	216, 372
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	2 cut(s)	345, 675
BpuEI	CTTGAG	2 cut(s)	320, 998
BsaHI	GRCGYC	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	277, 938
BsaWI	WCCGGW	2 cut(s)	393, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 809
Bse1I	ACTGG	4 cut(s)	209, 438, 452, 497
Bse3DI	GCAATG	3 cut(s)	76, 244, 862
BseAI	TCCGGA	1 cut(s)	1044
BseBI	CCWGG	1 cut(s)	634
BseDI	CCNNGG	2 cut(s)	277, 938
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	220, 809
BseMI	GCAATG	3 cut(s)	76, 244, 862
BseMII	CTCAG	4 cut(s)	336, 462, 666, 756
BseNI	ACTGG	4 cut(s)	209, 438, 452, 497
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	786
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	482, 496, 943, 961
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	394, 1045
BslFI	GGGAC	2 cut(s)	111, 415
BslI	CCNNNNNNNGG	2 cut(s)	220, 809
BsmAI	GTCTC	3 cut(s)	461, 715, 761
BsmFI	GGGAC	2 cut(s)	111, 415
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	482, 496, 943, 961
Bsp1286I	GDGCHC	2 cut(s)	288, 522
Bsp13I	TCCGGA	1 cut(s)	1044
Bsp143I	GATC	3 cut(s)	40, 629, 822
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	4 cut(s)	482, 496, 943, 961
BspCNI	CTCAG	4 cut(s)	337, 463, 667, 757
BspEI	TCCGGA	1 cut(s)	1044
BspHI	TCATGA	1 cut(s)	1054
BspLI	GGNNCC	3 cut(s)	6, 631, 921
BspPI	GGATC	2 cut(s)	624, 637
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	3 cut(s)	76, 244, 862
BsrI	ACTGG	4 cut(s)	209, 438, 452, 497
BssECI	CCNNGG	2 cut(s)	277, 938
BssMI	GATC	3 cut(s)	40, 629, 822
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	3 cut(s)	595, 685, 1072
Bst6I	CTCTTC	3 cut(s)	464, 527, 1058
BstACI	GRCGYC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	5 cut(s)	345, 452, 471, 675, 765
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	3 cut(s)	43, 632, 825
BstMAI	GTCTC	3 cut(s)	461, 715, 761
BstMBI	GATC	3 cut(s)	40, 629, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 973
BstNI	CCWGG	1 cut(s)	634
BstNSI	RCATGY	3 cut(s)	199, 308, 797
BstSCI	CCNGG	1 cut(s)	632
BstSLI	GKGCMC	1 cut(s)	288
BstV2I	GAAGAC	2 cut(s)	216, 372
BstX2I	RGATCY	2 cut(s)	40, 629
BstYI	RGATCY	2 cut(s)	40, 629
BsuRI	GGCC	4 cut(s)	482, 496, 943, 961
BtgI	CCRYGG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	952
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	4 cut(s)	45, 431, 490, 839
Cac8I	GCNNGC	1 cut(s)	342
CciI	TCATGA	1 cut(s)	1054
Cfr13I	GGNCC	1 cut(s)	959
CseI	GACGC	2 cut(s)	686, 862
Csp6I	GTAC	2 cut(s)	545, 1068
CviAII	CATG	6 cut(s)	196, 278, 305, 529, 794, 1055
CviQI	GTAC	2 cut(s)	545, 1068
DdeI	CTNAG	5 cut(s)	345, 452, 471, 675, 765
DpnI	GATC	3 cut(s)	42, 631, 824
DpnII	GATC	3 cut(s)	40, 629, 822
Eam1104I	CTCTTC	3 cut(s)	464, 527, 1058
EarI	CTCTTC	3 cut(s)	464, 527, 1058
Eco130I	CCWWGG	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	482
Eco57I	CTGAAG	5 cut(s)	21, 192, 438, 534, 990
EcoO109I	RGGNCCY	1 cut(s)	959
EcoRII	CCWGG	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	6 cut(s)	199, 281, 308, 532, 797, 1058
FalI	AAGNNNNNCTT	4 cut(s)	435, 467, 603, 635
FaqI	GGGAC	2 cut(s)	111, 415
FatI	CATG	6 cut(s)	195, 277, 304, 528, 793, 1054
FbaI	TGATCA	1 cut(s)	822
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	563, 909
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	790
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	4 cut(s)	482, 496, 943, 961
HapII	CCGG	2 cut(s)	394, 1045
HgaI	GACGC	2 cut(s)	686, 862
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	6 cut(s)	199, 281, 308, 532, 797, 1058
HincII	GTYRAC	1 cut(s)	1075
HindII	GTYRAC	1 cut(s)	1075
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	5 cut(s)	99, 176, 227, 558, 934
HpaII	CCGG	2 cut(s)	394, 1045
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	1 cut(s)	1075
Hpy188I	TCNGA	9 cut(s)	40, 472, 706, 746, 761, 939, 949, 1024, 1091
Hpy188III	TCNNGA	4 cut(s)	364, 734, 1045, 1055
Hpy8I	GTNNAC	1 cut(s)	1075
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	5 cut(s)	45, 421, 740, 803, 1042
HpyCH4III	ACNGT	3 cut(s)	595, 685, 1072
HpyCH4IV	ACGT	6 cut(s)	543, 588, 756, 828, 951, 1029
HpyCH4V	TGCA	6 cut(s)	237, 488, 507, 793, 839, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 973
HpyF3I	CTNAG	5 cut(s)	345, 452, 471, 675, 765
HpySE526I	ACGT	6 cut(s)	543, 588, 756, 828, 951, 1029
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	6 cut(s)	199, 281, 308, 532, 797, 1058
Kpn2I	TCCGGA	1 cut(s)	1044
Ksp22I	TGATCA	1 cut(s)	822
Kzo9I	GATC	3 cut(s)	40, 629, 822
LweI	GCATC	3 cut(s)	327, 826, 889
MaeI	CTAG	2 cut(s)	563, 909
MaeII	ACGT	6 cut(s)	543, 588, 756, 828, 951, 1029
MaeIII	GTNAC	2 cut(s)	589, 698
MalI	GATC	3 cut(s)	42, 631, 824
MboI	GATC	3 cut(s)	40, 629, 822
MboII	GAAGA	9 cut(s)	149, 185, 221, 372, 451, 544, 791, 1033, 1075
MflI	RGATCY	2 cut(s)	40, 629
MhlI	GDGCHC	2 cut(s)	288, 522
MluCI	AATT	2 cut(s)	231, 639
MlyI	GAGTC	2 cut(s)	93, 552
MmeI	TCCRAC	2 cut(s)	151, 667
MroI	TCCGGA	1 cut(s)	1044
MroXI	GAANNNNTTC	2 cut(s)	180, 618
MseI	TTAA	1 cut(s)	642
MslI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 929
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	2 cut(s)	394, 1045
MspR9I	CCNGG	1 cut(s)	634
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	2 cut(s)	428, 973
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	3 cut(s)	40, 629, 822
NlaIII	CATG	6 cut(s)	199, 281, 308, 532, 797, 1058
NlaIV	GGNNCC	3 cut(s)	6, 631, 921
NmuCI	GTSAC	2 cut(s)	589, 698
NspI	RCATGY	3 cut(s)	199, 308, 797
OliI	CACNNNNGTG	1 cut(s)	436
PagI	TCATGA	1 cut(s)	1054
PceI	AGGCCT	1 cut(s)	482
PciI	ACATGT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	2 cut(s)	180, 618
PfeI	GAWTC	3 cut(s)	176, 227, 934
PflFI	GACNNNGTC	1 cut(s)	1028
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	93, 552
PpsI	GAGTC	2 cut(s)	93, 552
PscI	ACATGT	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	786
PspGI	CCWGG	1 cut(s)	632
PspN4I	GGNNCC	3 cut(s)	6, 631, 921
PspPI	GGNCC	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	40, 629
PsyI	GACNNNGTC	1 cut(s)	1028
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	546, 1069
RsaNI	GTAC	2 cut(s)	545, 1068
RseI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 929
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	40, 629, 822
Sau96I	GGNCC	1 cut(s)	959
SchI	GAGTC	2 cut(s)	93, 552
ScrFI	CCNGG	1 cut(s)	634
SduI	GDGCHC	2 cut(s)	288, 522
SfaNI	GCATC	3 cut(s)	327, 826, 889
SmiMI	CAYNNNNRTG	4 cut(s)	194, 436, 705, 929
SmlI	CTYRAG	2 cut(s)	299, 977
SmoI	CTYRAG	2 cut(s)	299, 977
Sse9I	AATT	2 cut(s)	231, 639
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	563, 909
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	632
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	595, 685, 1072
TaiI	ACGT	6 cut(s)	546, 591, 759, 831, 954, 1032
TaqI	TCGA	4 cut(s)	365, 522, 876, 883
TasI	AATT	2 cut(s)	231, 639
TatI	WGTACW	1 cut(s)	1067
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	176, 227, 934
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	4 cut(s)	52, 438, 497, 846
TseFI	GTSAC	2 cut(s)	589, 698
Tsp45I	GTSAC	2 cut(s)	589, 698
TspDTI	ATGAA	4 cut(s)	167, 545, 590, 792
TspRI	CASTG	4 cut(s)	52, 438, 497, 846
Tth111I	GACNNNGTC	1 cut(s)	1028
XceI	RCATGY	3 cut(s)	199, 308, 797
XmnI	GAANNNNTTC	2 cut(s)	180, 618
XspI	CTAG	2 cut(s)	563, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.