Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Forward (+)

57084094 .. 57084825

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGATTAGTGACTTTGGTATTGAGCCACGTATTGAACACTATGCATCCCTTGTGGACATAATTGGTTGGCATGGACAGCTTGAGGAGGCTATGGATTTGATCAATAGCATGCCATTTGAAGCAGATAAGCCTGTGTGGGGAGCATTGTTAGGTGCCTGTAGACTGCATAACAATGCAGAGTTGGCAAAAGTTGCAGCTGAAGCATTAATGAGACATGAATCCGAATGCTCAGCTCCATTTGTATTGTTATACAATATGTATGCTGATGCTGGGCAATGTGATGAAGCAGCAGCTGTGAGACTGCGGATGGATAATAGCAAGATAATTAAGCAAAAAGGCTATAGTCAGGGGGCAAGATTGAAATTGAAGCAATTTTCTGATTTTTCATGGAATGTTAAAGCAAGCAAATCCTGGAAGAGATATGTATTTGAAGGACAGGTGGCAGGAGTTTCTAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

153

Amino Acids

17.18

Weight (kDa)

6.9

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	56 - 115	5.9e-09	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	35, 119, 361, 367, 431
AjnI	CCWGG	1 cut(s)	410
AluBI	AGCT	4 cut(s)	79, 197, 233, 293
AluI	AGCT	4 cut(s)	79, 197, 233, 293
Alw26I	GTCTC	2 cut(s)	205, 292
AlwNI	CAGNNNCTG	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	194, 287, 290
AseI	ATTAAT	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	206, 299, 302
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	412
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	205, 292
BfmI	CTRYAG	2 cut(s)	157, 340
BisI	GCNGC	3 cut(s)	195, 288, 291
BlpI	GCTNAGC	1 cut(s)	229
BlsI	GCNGC	3 cut(s)	196, 289, 292
Bme1390I	CCNGG	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	412
BmsI	GCATC	2 cut(s)	53, 256
Bpu1102I	GCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	44, 312
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	206, 299, 302
BseYI	CCCAGC	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	205, 292
BsmI	GAATGC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	99
Bsp1720I	GCTNAGC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	281
BssMI	GATC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	110, 403
BstDEI	CTNAG	2 cut(s)	229, 453
BstF5I	GGATG	2 cut(s)	44, 312
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	2 cut(s)	205, 292
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 182, 191, 200
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	2 cut(s)	157, 340
BstV1I	GCAGC	3 cut(s)	206, 299, 302
BtsCI	GGATG	2 cut(s)	44, 312
Cac8I	GCNNGC	2 cut(s)	110, 403
CaiI	CAGNNNCTG	1 cut(s)	293
CviAII	CATG	4 cut(s)	71, 109, 215, 387
CviJI	RGCY	8 cut(s)	25, 79, 89, 130, 197, 233, 293, 339
CviKI_1	RGCY	8 cut(s)	25, 79, 89, 130, 197, 233, 293, 339
DdeI	CTNAG	2 cut(s)	229, 453
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	46
FaeI	CATG	4 cut(s)	74, 112, 218, 390
FatI	CATG	4 cut(s)	70, 108, 214, 386
FbaI	TGATCA	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	195, 288, 291
FokI	GGATG	2 cut(s)	31, 319
Fsp4HI	GCNGC	3 cut(s)	195, 288, 291
GluI	GCNGC	3 cut(s)	195, 288, 291
GsaI	CCCAGC	1 cut(s)	273
Hin1II	CATG	4 cut(s)	74, 112, 218, 390
HinfI	GANTC	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	55, 161
Hpy188I	TCNGA	2 cut(s)	223, 379
Hpy8I	GTNNAC	2 cut(s)	55, 161
HpyAV	CCTTC	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	44, 166, 176, 194
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 182, 191, 200
HpyF3I	CTNAG	2 cut(s)	229, 453
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	4 cut(s)	74, 112, 218, 390
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	140, 238
LpnPI	CCDG	8 cut(s)	144, 169, 255, 332, 397, 422, 424, 429
Lsp1109I	GCAGC	3 cut(s)	206, 299, 302
LweI	GCATC	2 cut(s)	53, 256
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	1 cut(s)	427
MluCI	AATT	4 cut(s)	60, 324, 362, 371
MnlI	CCTC	2 cut(s)	76, 79
Mph1103I	ATGCAT	1 cut(s)	46
MseI	TTAA	3 cut(s)	206, 327, 396
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	197, 293
MspR9I	CCNGG	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	412
MwoI	GCNNNNNNNGC	4 cut(s)	76, 182, 191, 200
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	4 cut(s)	74, 112, 218, 390
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	46
NspI	RCATGY	1 cut(s)	112
PaeI	GCATGC	1 cut(s)	112
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	218
PfoI	TCCNGGA	1 cut(s)	410
PkrI	GCNGC	3 cut(s)	196, 289, 292
Ppu21I	YACGTR	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	293
PvuII	CAGCTG	2 cut(s)	197, 293
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	206, 327, 396
SatI	GCNGC	3 cut(s)	195, 288, 291
Sau3AI	GATC	1 cut(s)	99
ScrFI	CCNGG	1 cut(s)	412
SetI	ASST	7 cut(s)	31, 81, 154, 199, 235, 295, 441
SfaNI	GCATC	2 cut(s)	53, 256
SfcI	CTRYAG	2 cut(s)	157, 340
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	4 cut(s)	60, 324, 362, 371
SsiI	CCGC	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	410
TaiI	ACGT	1 cut(s)	31
TasI	AATT	4 cut(s)	60, 324, 362, 371
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	206, 327, 396
Tru9I	TTAA	3 cut(s)	206, 327, 396
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	194, 287, 290
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	231, 297, 375
VspI	ATTAAT	1 cut(s)	206
XceI	RCATGY	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.