Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Reverse (-)

54066890 .. 54068427

Gene Structure 1538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014504

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGATAACTGGGGGTGCCAAGAATGGGAGGATGGGGGAGGCATTGCGGCTTTTCGAGTCTATGCCTGAGAGGAGTGTTGTGTCTTGGAATGCAATGTTTGAGTTTTTCGAGAGAATGCCACAGATGGATGGAGCTTCTGTTAGTGCACTTGTGTTGGGGCTTACTCAAAACGGCGAGCTGGATGAAGCTGCGAGGATTGTTGTTCAATGTGGGGATAGGGGTGAGGGTGTGGAGGTTATGGTCAGAGAGGAATGGTTGAAGAAGCTCGTCACATTTTTGATCGAATTCCATTTTGTCATGATAAGGGGAAAGAGGGGCGGTAGGAGGTTTGAGAGAAATGTCATAACATGGAATTCCATGATTTTGTGCTATGTGAAACTAGGAAATGTTGTTTCTGCTAGGAAACTTTTTGACCAAATGATAGAACGAGATACCTGTTCTTGGAATACCATGATCAGTGGCTACGTTCATATGTCAGATATGGAAGAGGCGTCCAAGCTCTTTCTGGAAATGCCAACTCCTGATACACTGTCATGGAATTCAATGATCTTAGGATTCATCTGCTTGTCACGAAGACAGTTATGGCTTATTGCAGATTTGCCAATAAACAATGCCCTTGTAACTATGCATTCACGATGTGGTGTGATAGAGGAGGTGCAAACAATTTTTGATGAGATGAAATGGGAGAAAAATGTCATCTCGTGGAATGCAATGATCGGATGCTACTCATCTCATGGTTTTGCTGCAGAGGCTTTAGAACTTTTCGCTTTGATGAAGAGGTTAAATGTGCGACCTACTTATAGAACATTTATTGCAGTGTTGAATGCATGTGCTTATGCAGGATTAGCTGAAGAAGGGCGGAGGCAATTTAAATCCATGATTAGTGACTTTGGTATTGAGTCACGTATTGAACACTATGCATCCCTTGTGGACATAATTGGTTGGCATGGACAGCTTGAGGAGGCTATGGATTTGATCAATAGCATGCCATTTGAAGCAGATAAGCCTGTGTGGGGAGCATTGTTAGGTGCCTGTAGAGTGCATAACAATGCAGAGTTGGCAAAAGTTGCAGCTGAAGCATTAATGAGACTTGAATCCGAATGTTCAGCTCCATATGTATTGTTATACAATATGTATGCTGATGCTGGGCAATGTGATGAAGCAGCAGCTGTGAGACTGCTGATGGATAATAACAAGATAATTAAGCAAAAAGGCTATAGTCAGATAGATTTTCCCAGTGCTGAGGATATTTTTGTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

421

Amino Acids

47.53

Weight (kDa)

5.24

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	112 - 143	2.2e-06	PPR repeat family
PPR	PF01535	115 - 143	1.7e-07	PPR repeat
PPR_2	PF13041	144 - 186	1e-07	PPR repeat family
PPR	PF01535	147 - 171	4.5e-07	PPR repeat
PPR_2	PF13041	230 - 278	2.1e-09	PPR repeat family
PPR	PF01535	233 - 263	4.3e-07	PPR repeat
E_motif	PF20431	348 - 409	1.6e-10	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	14, 1028
AciI	CCGC	3 cut(s)	46, 318, 859
AcsI	RAATTY	3 cut(s)	284, 352, 538
AcuI	CTGAAG	2 cut(s)	870, 1095
AcyI	GRCGYC	1 cut(s)	491
AdeI	CACNNNGTG	1 cut(s)	638
AfiI	CCNNNNNNNGG	3 cut(s)	24, 441, 1013
AgsI	TTSAA	7 cut(s)	206, 259, 543, 823, 911, 995, 1094
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	1081, 1168
Alw44I	GTGCAC	1 cut(s)	144
AlwNI	CAGNNNCTG	1 cut(s)	1169
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	5 cut(s)	188, 743, 1070, 1163, 1166
ApoI	RAATTY	3 cut(s)	284, 352, 538
AseI	ATTAAT	1 cut(s)	1082
AsuHPI	GGTGA	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	2 cut(s)	14, 1028
BauI	CACGAG	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	1242
BbvI	GCAGC	5 cut(s)	175, 730, 1082, 1175, 1178
BccI	CCATC	4 cut(s)	25, 118, 122, 1177
BceAI	ACGGC	1 cut(s)	187
BclI	TGATCA	2 cut(s)	453, 975
BcoDI	GTCTC	2 cut(s)	1081, 1168
BfaI	CTAG	2 cut(s)	380, 399
BfmI	CTRYAG	3 cut(s)	744, 1033, 1216
BisI	GCNGC	6 cut(s)	47, 189, 744, 1071, 1164, 1167
BlsI	GCNGC	6 cut(s)	48, 190, 745, 1072, 1165, 1168
BmiI	GGNNCC	2 cut(s)	16, 1030
BmrI	ACTGGG	2 cut(s)	18, 1230
BmsI	GCATC	3 cut(s)	710, 929, 1132
BmuI	ACTGGG	2 cut(s)	18, 1230
BpiI	GAAGAC	1 cut(s)	580
Bpu10I	CCTNAGC	1 cut(s)	1242
BpuEI	CTTGAG	1 cut(s)	977
BsaAI	YACGTR	1 cut(s)	905
BsaHI	GRCGYC	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 441, 1013
Bse1I	ACTGG	2 cut(s)	13, 1236
Bse3DI	GCAATG	4 cut(s)	41, 99, 717, 1157
BseGI	GGATG	5 cut(s)	36, 133, 187, 725, 920
BseLI	CCNNNNNNNGG	3 cut(s)	24, 441, 1013
BseMI	GCAATG	4 cut(s)	41, 99, 717, 1157
BseMII	CTCAG	2 cut(s)	57, 1233
BseNI	ACTGG	2 cut(s)	13, 1236
BseRI	GAGGAG	3 cut(s)	85, 665, 974
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	5 cut(s)	175, 730, 1082, 1175, 1178
BseYI	CCCAGC	1 cut(s)	1145
BshNI	GGYRCC	2 cut(s)	14, 1028
BsiHKAI	GWGCWC	1 cut(s)	148
BslI	CCNNNNNNNGG	3 cut(s)	24, 441, 1013
BsmAI	GTCTC	2 cut(s)	1081, 1168
BsmI	GAATGC	5 cut(s)	94, 120, 628, 712, 829
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	5 cut(s)	279, 453, 546, 714, 975
BspACI	CCGC	3 cut(s)	46, 318, 859
BspCNI	CTCAG	2 cut(s)	58, 1234
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	16, 1030
BspMAI	CTGCAG	1 cut(s)	748
BspT107I	GGYRCC	2 cut(s)	14, 1028
BsrDI	GCAATG	4 cut(s)	41, 99, 717, 1157
BsrI	ACTGG	2 cut(s)	13, 1236
BssMI	GATC	5 cut(s)	279, 453, 546, 714, 975
BssNI	GRCGYC	1 cut(s)	491
BssSI	CACGAG	1 cut(s)	700
Bst2BI	CACGAG	1 cut(s)	700
Bst4CI	ACNGT	2 cut(s)	531, 579
Bst6I	CTCTTC	2 cut(s)	480, 770
BstACI	GRCGYC	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstBAI	YACGTR	1 cut(s)	905
BstC8I	GCNNGC	2 cut(s)	176, 986
BstDEI	CTNAG	3 cut(s)	66, 550, 1242
BstF5I	GGATG	5 cut(s)	36, 133, 187, 725, 920
BstKTI	GATC	5 cut(s)	282, 456, 549, 717, 978
BstMAI	GTCTC	2 cut(s)	1081, 1168
BstMBI	GATC	5 cut(s)	279, 453, 546, 714, 975
BstMWI	GCNNNNNNNGC	6 cut(s)	749, 845, 952, 1058, 1067, 1076
BstNSI	RCATGY	2 cut(s)	831, 988
BstSFI	CTRYAG	3 cut(s)	744, 1033, 1216
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	5 cut(s)	175, 730, 1082, 1175, 1178
BstV2I	GAAGAC	1 cut(s)	580
BtsCI	GGATG	5 cut(s)	36, 133, 187, 725, 920
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	4 cut(s)	463, 527, 822, 1243
Cac8I	GCNNGC	2 cut(s)	176, 986
CaiI	CAGNNNCTG	1 cut(s)	1169
CciI	TCATGA	1 cut(s)	297
CseI	GACGC	1 cut(s)	480
DdeI	CTNAG	3 cut(s)	66, 550, 1242
DpnI	GATC	5 cut(s)	281, 455, 548, 716, 977
DpnII	GATC	5 cut(s)	279, 453, 546, 714, 975
DraI	TTTAAA	1 cut(s)	871
DraIII	CACNNNGTG	1 cut(s)	638
Eam1104I	CTCTTC	2 cut(s)	480, 770
EarI	CTCTTC	2 cut(s)	480, 770
EciI	GGCGGA	1 cut(s)	874
Eco57I	CTGAAG	2 cut(s)	870, 1095
EcoRI	GAATTC	3 cut(s)	284, 352, 538
EcoT22I	ATGCAT	3 cut(s)	630, 829, 922
FauNDI	CATATG	2 cut(s)	471, 1114
FbaI	TGATCA	2 cut(s)	453, 975
Fnu4HI	GCNGC	6 cut(s)	47, 189, 744, 1071, 1164, 1167
FokI	GGATG	5 cut(s)	43, 140, 194, 732, 907
Fsp4HI	GCNGC	6 cut(s)	47, 189, 744, 1071, 1164, 1167
FspBI	CTAG	2 cut(s)	380, 399
GluI	GCNGC	6 cut(s)	47, 189, 744, 1071, 1164, 1167
GsaI	CCCAGC	1 cut(s)	1149
HgaI	GACGC	1 cut(s)	480
Hin1I	GRCGYC	1 cut(s)	491
HinfI	GANTC	4 cut(s)	56, 555, 899, 1094
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	146, 931
Hpy188I	TCNGA	5 cut(s)	245, 478, 719, 1099, 1224
Hpy188III	TCNNGA	6 cut(s)	109, 298, 506, 521, 570, 633
Hpy8I	GTNNAC	2 cut(s)	146, 931
HpyAV	CCTTC	1 cut(s)	848
HpyCH4III	ACNGT	2 cut(s)	531, 579
HpyCH4IV	ACGT	2 cut(s)	465, 904
HpyF10VI	GCNNNNNNNGC	6 cut(s)	749, 845, 952, 1058, 1067, 1076
HpyF3I	CTNAG	3 cut(s)	66, 550, 1242
HpySE526I	ACGT	2 cut(s)	465, 904
Hsp92I	GRCGYC	1 cut(s)	491
Ksp22I	TGATCA	2 cut(s)	453, 975
Kzo9I	GATC	5 cut(s)	279, 453, 546, 714, 975
LmnI	GCTCC	3 cut(s)	131, 1016, 1114
Lsp1109I	GCAGC	5 cut(s)	175, 730, 1082, 1175, 1178
LweI	GCATC	3 cut(s)	710, 929, 1132
MaeI	CTAG	2 cut(s)	380, 399
MaeII	ACGT	2 cut(s)	465, 904
MaeIII	GTNAC	5 cut(s)	268, 567, 619, 884, 900
MalI	GATC	5 cut(s)	281, 455, 548, 716, 977
MboI	GATC	5 cut(s)	279, 453, 546, 714, 975
MboII	GAAGA	5 cut(s)	271, 497, 585, 787, 863
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	7 cut(s)	284, 352, 538, 663, 866, 936, 1200
MlyI	GAGTC	2 cut(s)	65, 908
Mph1103I	ATGCAT	3 cut(s)	630, 829, 922
MseI	TTAA	4 cut(s)	782, 870, 1082, 1203
MslI	CAYNNNNRTG	2 cut(s)	532, 1047
MspA1I	CMGCKG	2 cut(s)	1073, 1169
Mva1269I	GAATGC	5 cut(s)	94, 120, 628, 712, 829
MwoI	GCNNNNNNNGC	6 cut(s)	749, 845, 952, 1058, 1067, 1076
NdeI	CATATG	2 cut(s)	471, 1114
NdeII	GATC	5 cut(s)	279, 453, 546, 714, 975
NlaIV	GGNNCC	2 cut(s)	16, 1030
NmuCI	GTSAC	4 cut(s)	268, 567, 884, 900
NsiI	ATGCAT	3 cut(s)	630, 829, 922
NspI	RCATGY	2 cut(s)	831, 988
PaeI	GCATGC	1 cut(s)	988
PagI	TCATGA	1 cut(s)	297
PctI	GAATGC	5 cut(s)	94, 120, 628, 712, 829
PfeI	GAWTC	2 cut(s)	555, 1094
PkrI	GCNGC	6 cut(s)	48, 190, 745, 1072, 1165, 1168
PleI	GAGTC	2 cut(s)	64, 907
PpsI	GAGTC	2 cut(s)	64, 907
Ppu21I	YACGTR	1 cut(s)	905
PshBI	ATTAAT	1 cut(s)	1082
PspFI	CCCAGC	1 cut(s)	1145
PspN4I	GGNNCC	2 cut(s)	16, 1030
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	1169
PvuII	CAGCTG	2 cut(s)	1073, 1169
RseI	CAYNNNNRTG	2 cut(s)	532, 1047
SaqAI	TTAA	4 cut(s)	782, 870, 1082, 1203
SatI	GCNGC	6 cut(s)	47, 189, 744, 1071, 1164, 1167
Sau3AI	GATC	5 cut(s)	279, 453, 546, 714, 975
SchI	GAGTC	2 cut(s)	65, 908
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	3 cut(s)	710, 929, 1132
SfcI	CTRYAG	3 cut(s)	744, 1033, 1216
SmiI	ATTTAAAT	1 cut(s)	871
SmiMI	CAYNNNNRTG	2 cut(s)	532, 1047
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
SphI	GCATGC	1 cut(s)	988
Sse9I	AATT	7 cut(s)	284, 352, 538, 663, 866, 936, 1200
SsiI	CCGC	3 cut(s)	46, 318, 859
SspMI	CTAG	2 cut(s)	380, 399
SwaI	ATTTAAAT	1 cut(s)	871
TaaI	ACNGT	2 cut(s)	531, 579
TaiI	ACGT	2 cut(s)	468, 907
TaqI	TCGA	3 cut(s)	54, 108, 282
TasI	AATT	7 cut(s)	284, 352, 538, 663, 866, 936, 1200
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	555, 1094
Tru1I	TTAA	4 cut(s)	782, 870, 1082, 1203
Tru9I	TTAA	4 cut(s)	782, 870, 1082, 1203
TscAI	CASTG	4 cut(s)	463, 534, 822, 1243
TseFI	GTSAC	4 cut(s)	268, 567, 884, 900
TseI	GCWGC	5 cut(s)	188, 743, 1070, 1163, 1166
Tsp45I	GTSAC	4 cut(s)	268, 567, 884, 900
TspDTI	ATGAA	6 cut(s)	198, 458, 547, 692, 788, 1173
TspRI	CASTG	4 cut(s)	463, 534, 822, 1243
VneI	GTGCAC	1 cut(s)	144
VspI	ATTAAT	1 cut(s)	1082
XapI	RAATTY	3 cut(s)	284, 352, 538
XceI	RCATGY	2 cut(s)	831, 988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XspI	CTAG	2 cut(s)	380, 399
Zsp2I	ATGCAT	3 cut(s)	630, 829, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.