Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Forward (+)

28888904 .. 28892936

Gene Structure 4033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGATAGAACGAGATACCTTTTCGTGGAATACCATGATCAGCGGCTATGTTCATATGTCAGATATGGAAGAGGCCGCCAATCTCTTTCTTAGAATGCCAAATCCTGATACACTGTCATGGAATGCAATGATCTTAGGGTATGCCCAGGTTGGGCTTTTAAAACTGGCTCATGATTTTTTTGAGAGGATGCCACACAAGAGTCTAATATCTTGGAACTCCATGATAGCAGGGTATGAGAAAAATGAGGACTTTATGGGTGGAGTTAAGCTTTTCTCTCAGATGCAACTAGAAGGAGAGAAACCTGATAGACACACTTTATCATCAGTTCTTAGTGTGAGTACTGGGTTAGTGGATCTGCATCTAGGAATGCAGATTCATCAGCTGGTCACGAAGACAGTTATTGCAGATTTGCCAATAAACAACTCTCTTATAACTATGTATTCACGATGTGGTGCTATCAAAGAGGCAGAAACAATTTTTGATGAGATGAAACAGCAGAAAGATGTGATCTCCTGGAATGCAATGATTGGGGGCTATGCATCTCATGGTTTTGCTGCAGAGGCTTTAGGACTTTTTTGTTTCATGAAGAGGTCAAAGGTGCAACCTACATATATAACATTTATTGCAGTTTTAAATGCATGTGCTCATGCAGGATTAGTTGAAGAAGGCCGGAGTCAATTTAAATCCATGATTAGTGAATTTGGCATTGAGCCACGTATCGAACACTATGCCGCCCTTGTGGACATCATTGGTCGGCATGGGCAGCTTGAGGAGGCTCACGATTTGATCAATAGTATGCCATTTGAACCTGATAAGGCTGTGTGGGGGAGCATTATTAGGTGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

282

Amino Acids

31.69

Weight (kDa)

5.54

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	7 - 32	1.9e-06	PPR repeat
PPR_2	PF13041	68 - 110	4.7e-08	PPR repeat family
PPR_2	PF13041	167 - 216	2.8e-10	PPR repeat family
PPR	PF01535	170 - 199	4.7e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AciI	CCGC	3 cut(s)	42, 75, 732
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	698
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	2 cut(s)	24, 150
AgsI	TTSAA	2 cut(s)	662, 806
AjnI	CCWGG	2 cut(s)	144, 512
AluBI	AGCT	3 cut(s)	268, 382, 766
AluI	AGCT	3 cut(s)	268, 382, 766
Alw21I	GWGCWC	1 cut(s)	646
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	2 cut(s)	72, 667
ApeKI	GCWGC	2 cut(s)	554, 763
ApoI	RAATTY	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	2 cut(s)	541, 775
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	2 cut(s)	146, 514
BclI	TGATCA	2 cut(s)	36, 786
BfaI	CTAG	2 cut(s)	287, 362
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	5 cut(s)	43, 75, 555, 732, 764
BlsI	GCNGC	5 cut(s)	44, 76, 556, 733, 765
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	146, 514
BmrFI	CCNGG	2 cut(s)	146, 514
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	4 cut(s)	177, 270, 367, 548
BmuI	ACTGGG	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	788
BsaAI	YACGTR	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 150
Bse1I	ACTGG	2 cut(s)	168, 346
Bse3DI	GCAATG	2 cut(s)	132, 528
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	146, 514
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	24, 150
BseMI	GCAATG	2 cut(s)	132, 528
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	168, 346
BseRI	GAGGAG	1 cut(s)	785
BseXI	GCAGC	2 cut(s)	541, 775
BshFI	GGCC	2 cut(s)	74, 669
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	670
BslI	CCNNNNNNNGG	2 cut(s)	24, 150
BsmI	GAATGC	4 cut(s)	99, 127, 372, 523
BsnI	GGCC	2 cut(s)	74, 669
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	5 cut(s)	36, 129, 352, 507, 786
BspACI	CCGC	3 cut(s)	42, 75, 732
BspANI	GGCC	2 cut(s)	74, 669
BspCNI	CTCAG	1 cut(s)	289
BspHI	TCATGA	2 cut(s)	169, 582
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	132, 528
BsrI	ACTGG	2 cut(s)	168, 346
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	5 cut(s)	36, 129, 352, 507, 786
Bst2UI	CCWGG	2 cut(s)	146, 514
Bst4CI	ACNGT	2 cut(s)	114, 397
Bst6I	CTCTTC	2 cut(s)	63, 581
BstBAI	YACGTR	1 cut(s)	716
BstDEI	CTNAG	4 cut(s)	89, 133, 276, 329
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	5 cut(s)	39, 132, 355, 510, 789
BstMBI	GATC	5 cut(s)	36, 129, 352, 507, 786
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 763
BstNI	CCWGG	2 cut(s)	146, 514
BstNSI	RCATGY	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	144, 512
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	2 cut(s)	541, 775
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	74, 669
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	110
CciI	TCATGA	2 cut(s)	169, 582
Csp6I	GTAC	1 cut(s)	339
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	4 cut(s)	89, 133, 276, 329
DpnI	GATC	5 cut(s)	38, 131, 354, 509, 788
DpnII	GATC	5 cut(s)	36, 129, 352, 507, 786
DraI	TTTAAA	3 cut(s)	159, 633, 682
DraIII	CACNNNGTG	1 cut(s)	449
Eam1104I	CTCTTC	2 cut(s)	63, 581
EarI	CTCTTC	2 cut(s)	63, 581
EcoRII	CCWGG	2 cut(s)	144, 512
EcoT22I	ATGCAT	2 cut(s)	541, 640
FauNDI	CATATG	1 cut(s)	54
FbaI	TGATCA	2 cut(s)	36, 786
Fnu4HI	GCNGC	5 cut(s)	43, 75, 555, 732, 764
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	5 cut(s)	43, 75, 555, 732, 764
FspBI	CTAG	2 cut(s)	287, 362
GluI	GCNGC	5 cut(s)	43, 75, 555, 732, 764
HaeIII	GGCC	2 cut(s)	74, 669
HapII	CCGG	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	3 cut(s)	199, 373, 673
HpaII	CCGG	1 cut(s)	670
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	2 cut(s)	61, 279
Hpy188III	TCNNGA	6 cut(s)	104, 170, 388, 444, 583, 779
Hpy8I	GTNNAC	1 cut(s)	742
HpyAV	CCTTC	2 cut(s)	284, 659
HpyCH4III	ACNGT	2 cut(s)	114, 397
HpyCH4IV	ACGT	1 cut(s)	715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 763
HpyF3I	CTNAG	4 cut(s)	89, 133, 276, 329
HpySE526I	ACGT	1 cut(s)	715
Ksp22I	TGATCA	2 cut(s)	36, 786
Kzo9I	GATC	5 cut(s)	36, 129, 352, 507, 786
LmnI	GCTCC	1 cut(s)	828
Lsp1109I	GCAGC	2 cut(s)	541, 775
LweI	GCATC	4 cut(s)	177, 270, 367, 548
MaeI	CTAG	2 cut(s)	287, 362
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	5 cut(s)	38, 131, 354, 509, 788
MboI	GATC	5 cut(s)	36, 129, 352, 507, 786
MboII	GAAGA	4 cut(s)	80, 403, 598, 674
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	3 cut(s)	474, 677, 698
MlyI	GAGTC	2 cut(s)	208, 682
MnlI	CCTC	8 cut(s)	64, 177, 238, 457, 553, 582, 763, 766
Mph1103I	ATGCAT	2 cut(s)	541, 640
MseI	TTAA	4 cut(s)	158, 264, 632, 681
MslI	CAYNNNNRTG	1 cut(s)	115
MspA1I	CMGCKG	2 cut(s)	42, 382
MspI	CCGG	1 cut(s)	670
MspR9I	CCNGG	2 cut(s)	146, 514
Mva1269I	GAATGC	4 cut(s)	99, 127, 372, 523
MvaI	CCWGG	2 cut(s)	146, 514
MwoI	GCNNNNNNNGC	2 cut(s)	560, 763
NdeI	CATATG	1 cut(s)	54
NdeII	GATC	5 cut(s)	36, 129, 352, 507, 786
NmuCI	GTSAC	1 cut(s)	385
NsiI	ATGCAT	2 cut(s)	541, 640
NspI	RCATGY	1 cut(s)	642
PagI	TCATGA	2 cut(s)	169, 582
PctI	GAATGC	4 cut(s)	99, 127, 372, 523
PfeI	GAWTC	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	512
PkrI	GCNGC	5 cut(s)	44, 76, 556, 733, 765
PleI	GAGTC	2 cut(s)	207, 681
PpsI	GAGTC	2 cut(s)	207, 681
Ppu21I	YACGTR	1 cut(s)	716
PsiI	TTATAA	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	144, 512
PspGI	CCWGG	2 cut(s)	144, 512
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	4 cut(s)	158, 264, 632, 681
SatI	GCNGC	5 cut(s)	43, 75, 555, 732, 764
Sau3AI	GATC	5 cut(s)	36, 129, 352, 507, 786
ScaI	AGTACT	1 cut(s)	340
SchI	GAGTC	2 cut(s)	208, 682
ScrFI	CCNGG	2 cut(s)	146, 514
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	4 cut(s)	177, 270, 367, 548
SfcI	CTRYAG	1 cut(s)	555
SmiI	ATTTAAAT	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	3 cut(s)	474, 677, 698
SsiI	CCGC	3 cut(s)	42, 75, 732
SspMI	CTAG	2 cut(s)	287, 362
StyD4I	CCNGG	2 cut(s)	144, 512
SwaI	ATTTAAAT	1 cut(s)	682
TaaI	ACNGT	2 cut(s)	114, 397
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	1 cut(s)	720
TasI	AATT	3 cut(s)	474, 677, 698
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	3 cut(s)	45, 77, 734
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	4 cut(s)	158, 264, 632, 681
Tru9I	TTAA	4 cut(s)	158, 264, 632, 681
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	2 cut(s)	554, 763
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	5 cut(s)	41, 365, 503, 571, 599
TspRI	CASTG	1 cut(s)	117
XapI	RAATTY	1 cut(s)	698
XceI	RCATGY	1 cut(s)	642
XspI	CTAG	2 cut(s)	287, 362
ZrmI	AGTACT	1 cut(s)	340
Zsp2I	ATGCAT	2 cut(s)	541, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.