Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003199

Physical Location & Seq

Genomic Coordinates Forward (+)

21134071 .. 21134652

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGATCGACCTTCATTTCAGTTTTGTATGCTTGTAGTCATGCTGGTCTGGTTGACAAAGGATGTGAGTATTTCTCTAAGATGAGAGATTTATATGGTATAGAACCAGCTATTGAACATTACGGTTATATAGTAGATCTATATGGTCGAGCTGGTAAACTGCAGAAGGCCTGTGATTTTGTACGTGAATTGCCAATATCTCCTAATGCTGTCATTTGGGGTACTCTTCTTGGGGCTTGCAGCATTCATGGTAATGTTGAGTTGGCAGAACAAGTGAAGGAAGTTCTTTCCAAACTTGATCCTGACAATTCTGGTGACCATGTTCTCTTGTCAAATGTATACGCTGTTGCGGGGAAGTGGAAGGATGTTGCTGCTCTAAGAAGATCAATGGCTGACCAGAGGATTAAGAAAGCTCCAGGATGGAGTGCAATTGAAGTTGACCGGGTCATGTATAGTTTTATGGCTGGTAAAAAATCAAATAACATTACAGAAGATGCTTATGAGAAGCTAAGGGAGGTAATGTTAAAACTTAGGTTGAAGGAGGCTATGTTCCGGAGGTTAGGAGTGTTTTGCTTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

194

Amino Acids

21.57

Weight (kDa)

8.53

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	83 - 145	6.5e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62260
fragaria_vesca	FvH4_2g07250
malus_domestica	MD10G1129300.v1.1
prunus_persica	Prupe.8G170100_v2.0.a1 Prupe.8G170100_v2.0.a1
pyrus_communis	pycom06g17110 pycom10g11090
rosa_chinensis	RchiOBHm_Chr6g0259851 RchiOBHm_Chr6g0279101
rosa_laevigata	RLG00000013168 RLG00000014504
rosa_multiflora	Rmu_co8522155.1_g000002 Rmu_sc0002080.1_g000004 Rmu_sc0009049.1_g000004 Rmu_sc0037609.1_g000001 Rmu_sc0037609.1_g000002 Rmu_sc0037609.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189130 Rroxscaffold_7G00207040 Rroxscaffold_7G00207050 Rroxscaffold_7G00207060 Rroxscaffold_7G00207180 Rroxscaffold_7G00207190 Rroxscaffold_7G00207200
rosa_rugosa	Rorug05G0590700 Rorug05G0590800 Rorug06G0122200
rosa_samantha	Rh6AG107400 Rh6AG230900 Rh6BG102900 Rh6BG235800 Rh6DG090200 Rh6DG229500
rosa_wichuraiana	Rw0G019930 Rw0G021150 Rw6G009260 Rw6G020220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AccIII	TCCGGA	1 cut(s)	552
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	2 cut(s)	13, 293
AfaI	GTAC	2 cut(s)	183, 223
AgsI	TTSAA	3 cut(s)	116, 434, 538
AjnI	CCWGG	1 cut(s)	415
AloI	GAACNNNNNNTCC	2 cut(s)	533, 565
AluBI	AGCT	4 cut(s)	110, 152, 413, 508
AluI	AGCT	4 cut(s)	110, 152, 413, 508
AlwI	GGATC	2 cut(s)	13, 293
Aor13HI	TCCGGA	1 cut(s)	552
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	240, 371
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	252, 358
BccI	CCATC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	417
BcnI	CCSGG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	161
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	241, 372
BlsI	GCNGC	2 cut(s)	242, 373
Bme1390I	CCNGG	2 cut(s)	417, 443
BmrFI	CCNGG	2 cut(s)	417, 443
BmsI	GCATC	1 cut(s)	484
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	552
BsaXI	ACNNNNNCTCC	4 cut(s)	506, 533, 536, 563
BseAI	TCCGGA	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	417
BseGI	GGATG	3 cut(s)	68, 370, 425
BseXI	GCAGC	2 cut(s)	252, 358
BshFI	GGCC	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	442, 553
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	552
Bsp143I	GATC	4 cut(s)	5, 136, 298, 383
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	170
BspEI	TCCGGA	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	2 cut(s)	13, 293
BssMI	GATC	4 cut(s)	5, 136, 298, 383
BssNAI	GTATAC	1 cut(s)	340
Bst1107I	GTATAC	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	4 cut(s)	78, 377, 509, 530
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	3 cut(s)	68, 370, 425
BstKTI	GATC	4 cut(s)	8, 139, 301, 386
BstMBI	GATC	4 cut(s)	5, 136, 298, 383
BstNI	CCWGG	1 cut(s)	417
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	415, 441
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	252, 358
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BstZ17I	GTATAC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	68, 370, 425
Cac8I	GCNNGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	182, 222
CviAII	CATG	4 cut(s)	41, 248, 320, 448
CviJI	RGCY	9 cut(s)	110, 152, 170, 236, 392, 413, 464, 508, 545
CviKI_1	RGCY	9 cut(s)	110, 152, 170, 236, 392, 413, 464, 508, 545
CviQI	GTAC	2 cut(s)	182, 222
DdeI	CTNAG	4 cut(s)	78, 377, 509, 530
DpnI	GATC	4 cut(s)	7, 138, 300, 385
DpnII	GATC	4 cut(s)	5, 136, 298, 383
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	415
FaeI	CATG	4 cut(s)	44, 251, 323, 451
FatI	CATG	4 cut(s)	40, 247, 319, 447
FauI	CCCGC	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	241, 372
FokI	GGATG	3 cut(s)	75, 377, 432
Fsp4HI	GCNGC	2 cut(s)	241, 372
GluI	GCNGC	2 cut(s)	241, 372
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	442, 553
Hin1II	CATG	4 cut(s)	44, 251, 323, 451
HincII	GTYRAC	2 cut(s)	55, 439
HindII	GTYRAC	2 cut(s)	55, 439
HpaII	CCGG	2 cut(s)	442, 553
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	4 cut(s)	55, 158, 340, 439
Hpy188III	TCNNGA	2 cut(s)	302, 553
Hpy8I	GTNNAC	4 cut(s)	55, 158, 340, 439
HpyAV	CCTTC	5 cut(s)	22, 160, 271, 355, 532
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	3 cut(s)	163, 240, 428
HpyF3I	CTNAG	4 cut(s)	78, 377, 509, 530
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	4 cut(s)	44, 251, 323, 451
Kpn2I	TCCGGA	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	5, 136, 298, 383
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	2 cut(s)	252, 358
LweI	GCATC	1 cut(s)	484
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	4 cut(s)	7, 138, 300, 385
MboI	GATC	4 cut(s)	5, 136, 298, 383
MboII	GAAGA	3 cut(s)	218, 393, 503
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	3 cut(s)	188, 307, 429
MnlI	CCTC	4 cut(s)	393, 508, 535, 549
MroI	TCCGGA	1 cut(s)	552
MseI	TTAA	2 cut(s)	405, 524
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	2 cut(s)	442, 553
MspR9I	CCNGG	2 cut(s)	417, 443
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	417
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	4 cut(s)	5, 136, 298, 383
NlaIII	CATG	4 cut(s)	44, 251, 323, 451
NmuCI	GTSAC	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	170
PctI	GAATGC	1 cut(s)	243
PflFI	GACNNNGTC	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	2 cut(s)	242, 373
Ppu21I	YACGTR	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	415
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	136
PsyI	GACNNNGTC	1 cut(s)	443
RsaI	GTAC	2 cut(s)	183, 223
RsaNI	GTAC	2 cut(s)	182, 222
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	405, 524
SatI	GCNGC	2 cut(s)	241, 372
Sau3AI	GATC	4 cut(s)	5, 136, 298, 383
ScrFI	CCNGG	2 cut(s)	417, 443
SetI	ASST	9 cut(s)	14, 112, 154, 187, 415, 510, 519, 536, 560
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	188, 307, 429
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	350
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	415, 441
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	8, 148
TasI	AATT	3 cut(s)	188, 307, 429
Tru1I	TTAA	2 cut(s)	405, 524
Tru9I	TTAA	2 cut(s)	405, 524
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	240, 371
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	4, 236
Tth111I	GACNNNGTC	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.