Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Forward (+)

18765743 .. 18768308

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCCTCTGCGATGCTCAACGGGGCCGAGCATCTCACACTCCGACGAGGTCTCTCCCCAAACGGGTTGGGTTTTGTTGGGTCAGATCTTCACGGGAAGCAGTTTCTGAAGATGGGTTTGGTCTCAAGCACTAGAATCTCCAAGTCTGGTGTTAGAGCCATTGTTCCCAAGTGTAGTGTCTCGGCTTCAAGGCCTGCTTCACAGCCCAGGTTCATTCAGCACAAGAAAGAGGCTTTCTGGTTTTATAGGTTTCTGTCTATTGTTTATGACCATGTTATAAACCCGGGGCATTGGACTGAGGACATGAGAGACGAGGCGCTTGAGCCAGCTGATCTTTACGACAGGAGAATGATTGTCGTTGATGTGGGTGGAGGTACTGGGTTTACGACTTTGGGGATTGTTAAGCATGTGGATGCTAAGAATGTGACTATTCTTGATCAGTCACCTCATCAGCTGGCGAGGGCTAAGAAGAAGGAGCCTTTGAAGGAGTGCAAGATCATTGAAGGTGATGCTGAGGACTTGCCTTTTCCGACTGATTATGCTGATCGATATGTGTCTGCAGGAAGTATCGAGTACTGGCCAGACCCACAGCGTGGCATCAAGGAAGCATACAGGGTCTTGAAACTTGGAGGAAAAGCATGCGTGATTGGTCCTGTGTACCCAACATTTTGGTTGTCTCGCTTCTTTGCAGATGTATGGATGCTTTTCCCAAAGGAGGAGGAGTACATTGAATGGTTCGAGAAGGCTGGATTCAAAGATGTCCAACTGAAAAGGATTGGCCCAAAATGGTACCGTGGGGTTCGCCGCCATGGATTGATAATGGGGTGTTCTGTGACAGGCGTTAAGCCTGCATCTGGGGATTCTCCTTTAAAGCTTGGACCAAAAGCAGAGGATGTGTCAGAGCCTGTAAAGCCATTAGCGTTCCTTACGCGCTTCATCTTGGGTGCCTTGGCAGGAATGTACTATGTACTGGTGCCTATATACATGTGGCTGAAAGATCAAATTGTACCAAAAGGTCAACCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0010189 GO:0010236 GO:0016020 GO:0016740 GO:0016741 GO:0018130 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032259 GO:0042170 GO:0042180 GO:0042181 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0051741 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25

Protein Analysis

343

Amino Acids

38.37

Weight (kDa)

9.28

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	115 - 219	4.2e-11	Methyltransferase domain
Ubie_methyltran	PF01209	118 - 218	4e-12	ubiE/COQ5 methyltransferase family
Methyltransf_25	PF13649	119 - 211	4e-17	Methyltransferase domain
Methyltransf_11	PF08241	120 - 214	1.3e-19	Methyltransferase domain
Methyltransf_12	PF08242	120 - 212	6.1e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
Acc65I	GGTACC	1 cut(s)	789
AccB1I	GGYRCC	3 cut(s)	789, 944, 973
AccB7I	CCANNNNNTGG	1 cut(s)	593
AccII	CGCG	1 cut(s)	931
AciI	CCGC	1 cut(s)	805
AcoI	YGGCCR	1 cut(s)	578
AcuI	CTGAAG	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	593
AfaI	GTAC	8 cut(s)	376, 575, 659, 725, 791, 962, 969, 1008
AfiI	CCNNNNNNNGG	4 cut(s)	63, 593, 715, 854
AflIII	ACRYGT	1 cut(s)	984
AgsI	TTSAA	6 cut(s)	189, 484, 503, 622, 731, 754
AjnI	CCWGG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	3 cut(s)	329, 454, 874
AluI	AGCT	3 cut(s)	329, 454, 874
Alw26I	GTCTC	5 cut(s)	56, 127, 184, 303, 681
AlwNI	CAGNNNCTG	2 cut(s)	106, 905
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	5 cut(s)	3, 24, 191, 578, 778
Asp718I	GGTACC	1 cut(s)	789
AspLEI	GCGC	2 cut(s)	319, 933
AspS9I	GGNCC	4 cut(s)	24, 650, 779, 878
AsuC2I	CCSGG	2 cut(s)	284, 285
AsuHPI	GGTGA	2 cut(s)	435, 518
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	650, 878
BalI	TGGCCA	1 cut(s)	580
BanI	GGYRCC	3 cut(s)	789, 944, 973
BbvCI	CCTCAGC	1 cut(s)	513
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	208
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	2 cut(s)	284, 285
BcoDI	GTCTC	5 cut(s)	56, 127, 184, 303, 681
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	320
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	805
BlsI	GCNGC	1 cut(s)	806
BmcAI	AGTACT	1 cut(s)	575
Bme1390I	CCNGG	3 cut(s)	208, 284, 285
Bme18I	GGWCC	2 cut(s)	650, 878
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	4 cut(s)	24, 650, 779, 878
BmiI	GGNNCC	5 cut(s)	25, 477, 791, 946, 975
BmrFI	CCNGG	3 cut(s)	208, 284, 285
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	7 cut(s)	3, 40, 403, 499, 606, 690, 860
BmuI	ACTGGG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	2 cut(s)	109, 341
BpuMI	CCSGG	2 cut(s)	284, 285
Bsa29I	ATCGAT	1 cut(s)	547
BsaI	GGTCTC	2 cut(s)	56, 127
BsaJI	CCNNGG	6 cut(s)	206, 283, 284, 793, 808, 948
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 593, 715, 854
Bse1I	ACTGG	3 cut(s)	382, 581, 975
BseBI	CCWGG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	547
BseDI	CCNNGG	6 cut(s)	206, 283, 284, 793, 808, 948
BseGI	GGATG	3 cut(s)	418, 705, 898
BseLI	CCNNNNNNNGG	4 cut(s)	63, 593, 715, 854
BseMII	CTCAG	2 cut(s)	288, 504
BseNI	ACTGG	3 cut(s)	382, 581, 975
BseRI	GAGGAG	2 cut(s)	731, 734
Bsh1236I	CGCG	1 cut(s)	931
BshFI	GGCC	5 cut(s)	5, 26, 193, 580, 780
BshNI	GGYRCC	3 cut(s)	789, 944, 973
BshVI	ATCGAT	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	4 cut(s)	63, 593, 715, 854
BsmAI	GTCTC	5 cut(s)	56, 127, 184, 303, 681
BsmBI	CGTCTC	1 cut(s)	303
BsnI	GGCC	5 cut(s)	5, 26, 193, 580, 780
Bso31I	GGTCTC	2 cut(s)	56, 127
BsoBI	CYCGRG	1 cut(s)	283
Bsp143I	GATC	6 cut(s)	85, 331, 436, 495, 544, 997
Bsp19I	CCATGG	1 cut(s)	808
BspACI	CCGC	1 cut(s)	805
BspANI	GGCC	5 cut(s)	5, 26, 193, 580, 780
BspCNI	CTCAG	2 cut(s)	289, 505
BspDI	ATCGAT	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	931
BspLI	GGNNCC	5 cut(s)	25, 477, 791, 946, 975
BspMAI	CTGCAG	1 cut(s)	562
BspT107I	GGYRCC	3 cut(s)	789, 944, 973
BspTNI	GGTCTC	2 cut(s)	56, 127
BsrI	ACTGG	3 cut(s)	382, 581, 975
BssECI	CCNNGG	6 cut(s)	206, 283, 284, 793, 808, 948
BssMI	GATC	6 cut(s)	85, 331, 436, 495, 544, 997
BssT1I	CCWWGG	2 cut(s)	808, 948
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	794
BstC8I	GCNNGC	5 cut(s)	195, 327, 456, 640, 849
BstDEI	CTNAG	4 cut(s)	297, 417, 465, 513
BstDSI	CCRYGG	2 cut(s)	793, 808
BstF5I	GGATG	3 cut(s)	418, 705, 898
BstFNI	CGCG	1 cut(s)	931
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	319, 933
BstKTI	GATC	6 cut(s)	88, 334, 439, 498, 547, 1000
BstMAI	GTCTC	5 cut(s)	56, 127, 184, 303, 681
BstMBI	GATC	6 cut(s)	85, 331, 436, 495, 544, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	910
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	3 cut(s)	410, 642, 988
BstSCI	CCNGG	3 cut(s)	206, 282, 283
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	931
BstX2I	RGATCY	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	547
BsuRI	GGCC	5 cut(s)	5, 26, 193, 580, 780
BsuTUI	ATCGAT	1 cut(s)	547
BtgI	CCRYGG	2 cut(s)	793, 808
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	3 cut(s)	418, 705, 898
Cac8I	GCNNGC	5 cut(s)	195, 327, 456, 640, 849
CaiI	CAGNNNCTG	2 cut(s)	106, 905
CfoI	GCGC	2 cut(s)	319, 933
Cfr13I	GGNCC	4 cut(s)	24, 650, 779, 878
Cfr9I	CCCGGG	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	547
Csp6I	GTAC	8 cut(s)	375, 574, 658, 724, 790, 961, 968, 1007
CviAII	CATG	6 cut(s)	272, 304, 407, 639, 809, 985
CviQI	GTAC	8 cut(s)	375, 574, 658, 724, 790, 961, 968, 1007
DdeI	CTNAG	4 cut(s)	297, 417, 465, 513
DpnI	GATC	6 cut(s)	87, 333, 438, 497, 546, 999
DpnII	GATC	6 cut(s)	85, 331, 436, 495, 544, 997
DraI	TTTAAA	1 cut(s)	870
DraIII	CACNNNGTG	1 cut(s)	593
EaeI	YGGCCR	1 cut(s)	578
Eco130I	CCWWGG	2 cut(s)	808, 948
Eco147I	AGGCCT	1 cut(s)	193
Eco31I	GGTCTC	2 cut(s)	56, 127
Eco47I	GGWCC	2 cut(s)	650, 878
Eco57I	CTGAAG	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	2 cut(s)	808, 948
ErhI	CCWWGG	2 cut(s)	808, 948
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	6 cut(s)	275, 307, 410, 642, 812, 988
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FatI	CATG	6 cut(s)	271, 303, 406, 638, 808, 984
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	805
FokI	GGATG	3 cut(s)	425, 712, 905
Fsp4HI	GCNGC	1 cut(s)	805
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	2 cut(s)	318, 932
GluI	GCNGC	1 cut(s)	805
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	5 cut(s)	5, 26, 193, 580, 780
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	2 cut(s)	319, 933
Hin1II	CATG	6 cut(s)	275, 307, 410, 642, 812, 988
Hin6I	GCGC	2 cut(s)	317, 931
HinP1I	GCGC	2 cut(s)	317, 931
HincII	GTYRAC	1 cut(s)	1019
HindII	GTYRAC	1 cut(s)	1019
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	3 cut(s)	135, 750, 860
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	2 cut(s)	435, 518
Hpy166II	GTNNAC	3 cut(s)	384, 658, 1019
Hpy188I	TCNGA	5 cut(s)	44, 85, 108, 531, 901
Hpy188III	TCNNGA	3 cut(s)	434, 619, 739
Hpy8I	GTNNAC	3 cut(s)	384, 658, 1019
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	4 cut(s)	466, 478, 497, 736
HpyCH4III	ACNGT	1 cut(s)	794
HpyCH4V	TGCA	4 cut(s)	492, 560, 689, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	910
HpyF3I	CTNAG	4 cut(s)	297, 417, 465, 513
Hsp92II	CATG	6 cut(s)	275, 307, 410, 642, 812, 988
HspAI	GCGC	2 cut(s)	317, 931
KpnI	GGTACC	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	6 cut(s)	85, 331, 436, 495, 544, 997
LmnI	GCTCC	1 cut(s)	475
LweI	GCATC	7 cut(s)	3, 40, 403, 499, 606, 690, 860
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	424, 441, 832
MalI	GATC	6 cut(s)	87, 333, 438, 497, 546, 999
MboI	GATC	6 cut(s)	85, 331, 436, 495, 544, 997
MboII	GAAGA	3 cut(s)	80, 121, 481
MflI	RGATCY	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	580
MluCI	AATT	1 cut(s)	1002
MluNI	TGGCCA	1 cut(s)	580
MmeI	TCCRAC	3 cut(s)	67, 554, 787
Mox20I	TGGCCA	1 cut(s)	580
MscI	TGGCCA	1 cut(s)	580
MseI	TTAA	3 cut(s)	402, 843, 869
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	580
MspA1I	CMGCKG	2 cut(s)	329, 454
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	3 cut(s)	208, 284, 285
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	931
MwoI	GCNNNNNNNGC	1 cut(s)	910
NciI	CCSGG	2 cut(s)	284, 285
NcoI	CCATGG	1 cut(s)	808
NdeII	GATC	6 cut(s)	85, 331, 436, 495, 544, 997
NlaIII	CATG	6 cut(s)	275, 307, 410, 642, 812, 988
NlaIV	GGNNCC	5 cut(s)	25, 477, 791, 946, 975
NmeAIII	GCCGAG	2 cut(s)	52, 161
NmuCI	GTSAC	3 cut(s)	424, 441, 832
NspI	RCATGY	3 cut(s)	410, 642, 988
PaeI	GCATGC	1 cut(s)	642
PceI	AGGCCT	1 cut(s)	193
PciI	ACATGT	1 cut(s)	984
PfeI	GAWTC	3 cut(s)	135, 750, 860
PflFI	GACNNNGTC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	1 cut(s)	806
PscI	ACATGT	1 cut(s)	984
PsiI	TTATAA	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	5 cut(s)	25, 477, 791, 946, 975
PspPI	GGNCC	4 cut(s)	24, 650, 779, 878
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	2 cut(s)	106, 905
PsuI	RGATCY	1 cut(s)	85
PsyI	GACNNNGTC	1 cut(s)	48
PvuII	CAGCTG	2 cut(s)	329, 454
RsaI	GTAC	8 cut(s)	376, 575, 659, 725, 791, 962, 969, 1008
RsaNI	GTAC	8 cut(s)	375, 574, 658, 724, 790, 961, 968, 1007
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	402, 843, 869
SatI	GCNGC	1 cut(s)	805
Sau3AI	GATC	6 cut(s)	85, 331, 436, 495, 544, 997
Sau96I	GGNCC	4 cut(s)	24, 650, 779, 878
ScaI	AGTACT	1 cut(s)	575
ScrFI	CCNGG	3 cut(s)	208, 284, 285
SfaNI	GCATC	7 cut(s)	3, 40, 403, 499, 606, 690, 860
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	2 cut(s)	650, 878
SmaI	CCCGGG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	124, 320
SmoI	CTYRAG	2 cut(s)	124, 320
SphI	GCATGC	1 cut(s)	642
Sse9I	AATT	1 cut(s)	1002
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	805
SspMI	CTAG	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	206, 282, 283
StyI	CCWWGG	2 cut(s)	808, 948
TaaI	ACNGT	1 cut(s)	794
TaqI	TCGA	3 cut(s)	547, 570, 738
TasI	AATT	1 cut(s)	1002
TatI	WGTACW	4 cut(s)	573, 723, 960, 967
TauI	GCSGC	1 cut(s)	807
TfiI	GAWTC	3 cut(s)	135, 750, 860
Tru1I	TTAA	3 cut(s)	402, 843, 869
Tru9I	TTAA	3 cut(s)	402, 843, 869
TseFI	GTSAC	3 cut(s)	424, 441, 832
Tsp45I	GTSAC	3 cut(s)	424, 441, 832
TspDTI	ATGAA	2 cut(s)	202, 925
TspMI	CCCGGG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	650, 878
XceI	RCATGY	3 cut(s)	410, 642, 988
XmaI	CCCGGG	1 cut(s)	283
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.