Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027068.1

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1360

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027068.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 460 bp

tatagagtactggccggatccacagcgtggaatcaaggaagcatacagggtactaaaaataggaggaaaagcctgtcttataggccctgtgtacccaaccttctggctgtctcgttttttcgcagacgtgtggatgctcttcccaacagaggaagaatacattgagtggttccaaaaggcaggtttcaaagatgttaaactaaaaagaattggtccaaagtgtgattctggtactagcagtgagtggcagtgtatgtcattgcaacaatggcagcggcgaccatattggtgcaatggtaatacaggaagtggcgaccatatttggtggaatgccgaccatggtggtgctcatgctagtgattgtggacttgcagtagtggcaaagaggagttgtgatggtgttggtgagactgtgacagtgattgatgtggttcattttaaatacaaaaacggaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0010189 GO:0010236 GO:0016020 GO:0016740 GO:0016741 GO:0018130 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032259 GO:0042170 GO:0042180 GO:0042181 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0051741 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25

Protein Analysis

152

Amino Acids

17.38

Weight (kDa)

8.23

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	171
AccB7I	CCANNNNNTGG	1 cut(s)	27
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	12, 25
AcoI	YGGCCR	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	27
AfaI	GTAC	4 cut(s)	9, 52, 93, 233
AfiI	CCNNNNNNNGG	2 cut(s)	27, 149
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	115, 402
AlwI	GGATC	2 cut(s)	12, 25
AoxI	GGCC	2 cut(s)	12, 83
ApeKI	GCWGC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	84, 213
AsuHPI	GGTGA	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	84, 116
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	115, 402
BfaI	CTAG	2 cut(s)	235, 355
BfuAI	ACCTGC	1 cut(s)	171
BisI	GCNGC	2 cut(s)	273, 276
BlsI	GCNGC	2 cut(s)	274, 277
BmcAI	AGTACT	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	84, 213
BmiI	GGNNCC	2 cut(s)	19, 171
BmsI	GCATC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 149
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	258, 299
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	27, 149
BseMI	GCAATG	2 cut(s)	258, 299
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	284
BshFI	GGCC	2 cut(s)	14, 85
BsiHKAI	GWGCWC	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	2 cut(s)	27, 149
BsmAI	GTCTC	2 cut(s)	115, 402
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	14, 85
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	17
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	2 cut(s)	14, 85
BspLI	GGNNCC	2 cut(s)	19, 171
BspMI	ACCTGC	1 cut(s)	171
BspPI	GGATC	2 cut(s)	12, 25
BspQI	GCTCTTC	1 cut(s)	144
BsrDI	GCAATG	2 cut(s)	258, 299
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	413, 419
Bst6I	CTCTTC	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	2 cut(s)	115, 402
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 378
BstV1I	GCAGC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	14, 85
BtgI	CCRYGG	1 cut(s)	338
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	2 cut(s)	245, 255
BtsIMutI	CAGTG	3 cut(s)	245, 255, 424
BveI	ACCTGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	84, 213
Csp6I	GTAC	4 cut(s)	8, 51, 92, 232
CviAII	CATG	2 cut(s)	339, 351
CviJI	RGCY	4 cut(s)	14, 72, 85, 107
CviKI_1	RGCY	4 cut(s)	14, 72, 85, 107
CviQI	GTAC	4 cut(s)	8, 51, 92, 232
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
DraI	TTTAAA	1 cut(s)	440
DraIII	CACNNNGTG	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	2 cut(s)	342, 354
FaiI	YATR	8 cut(s)	3, 44, 81, 255, 284, 319, 340, 352
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	2 cut(s)	338, 350
Fnu4HI	GCNGC	2 cut(s)	273, 276
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	273, 276
FspBI	CTAG	2 cut(s)	235, 355
GluI	GCNGC	2 cut(s)	273, 276
HaeIII	GGCC	2 cut(s)	14, 85
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	2 cut(s)	342, 354
HinfI	GANTC	2 cut(s)	31, 225
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	2 cut(s)	92, 366
Hpy8I	GTNNAC	2 cut(s)	92, 366
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	413, 419
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	3 cut(s)	263, 292, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 378
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	342, 354
Kzo9I	GATC	1 cut(s)	17
LguI	GCTCTTC	1 cut(s)	144
LpnPI	CCDG	8 cut(s)	28, 32, 86, 89, 100, 166, 214, 289
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	235, 355
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	131, 165
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	1 cut(s)	208
MnlI	CCTC	3 cut(s)	57, 143, 379
MseI	TTAA	2 cut(s)	196, 439
MslI	CAYNNNNRTG	3 cut(s)	287, 343, 355
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	269, 378
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	342, 354
NlaIV	GGNNCC	2 cut(s)	19, 171
NmuCI	GTSAC	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	31, 225
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	274, 277
PspN4I	GGNNCC	2 cut(s)	19, 171
PspPI	GGNCC	2 cut(s)	84, 213
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	4 cut(s)	9, 52, 93, 233
RsaNI	GTAC	4 cut(s)	8, 51, 92, 232
RseI	CAYNNNNRTG	3 cut(s)	287, 343, 355
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	196, 439
SatI	GCNGC	2 cut(s)	273, 276
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	2 cut(s)	84, 213
ScaI	AGTACT	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	3 cut(s)	102, 130, 185
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	3 cut(s)	287, 343, 355
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	2 cut(s)	235, 355
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	413, 419
TaiI	ACGT	1 cut(s)	130
TasI	AATT	1 cut(s)	208
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	31, 225
Tru1I	TTAA	2 cut(s)	196, 439
Tru9I	TTAA	2 cut(s)	196, 439
TscAI	CASTG	3 cut(s)	245, 255, 424
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	3 cut(s)	245, 255, 424
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	213
XspI	CTAG	2 cut(s)	235, 355
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.