Rorug03G0320000
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ MBSQ MT family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
34577508 .. 34578078
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0320000.1

Sequence Viewer

Length: 168 bp
ATGAAGCCCAAGTCCATTCATAAAGATGATATATATATTGCCAGAGCTGTGCCTACAGTTAATTTCTTTTGCATTTCAACGATGATGTGCTTCCGACGACCTTTGCAGACACTCGGTCGTTCTCCGGCGATCTCCGCCTTCCAATCTCATTCGAATTTCAGTTTTTAG

Protein Analysis

55

Amino Acids

6.3

Weight (kDa)

10.05

Isoelectric Point (pI)

59.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AcsI RAATTY 1 cut(s) 154
AgsI TTSAA 1 cut(s) 78
AhdI GACNNNNNGTC 1 cut(s) 114
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
ApoI RAATTY 1 cut(s) 154
AsuII TTCGAA 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 54
BmeRI GACNNNNNGTC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 152
Bsh1285I CGRYCG 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 118
BsiSI CCGG 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 152
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 152
BssMI GATC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 152
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 54
CviJI RGCY 2 cut(s) 7, 47
CviKI_1 RGCY 2 cut(s) 7, 47
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
DriI GACNNNNNGTC 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 114
EciI GGCGGA 1 cut(s) 124
FaiI YATR 4 cut(s) 21, 32, 34, 36
HapII CCGG 1 cut(s) 125
HpaII CCGG 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 95
Hpy99I CGWCG 1 cut(s) 99
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 72, 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 2 cut(s) 55, 138
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MluCI AATT 2 cut(s) 61, 154
MmeI TCCRAC 1 cut(s) 118
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 129
NspV TTCGAA 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 1 cut(s) 129
SetI ASST 2 cut(s) 49, 103
SfcI CTRYAG 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 152
SgeI CNNG 4 cut(s) 22, 54, 125, 137
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 2 cut(s) 61, 154
SsiI CCGC 1 cut(s) 135
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 152
TaqII GACCGA 1 cut(s) 104
TasI AATT 2 cut(s) 61, 154
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TspDTI ATGAA 2 cut(s) 8, 17
XapI RAATTY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.