Rh4AG019900

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000449
Physical Location & Seq
Reverse (-)
3818088 .. 3820879
2792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG019900.1

Sequence Viewer

Length: 648 bp
ATGGACATAATGGCTTTTGTACGCTACGCTTTGGCTTTTGATCCTTCCACATCGCCTCATTACAAGGTGGTCTGCGTGAACACCTGCCCCTATTATCATGATTGGAGCCAGCACAAAATAGACATATATTCGTCTGAGACCGGAAAGTGGAAGCGTCTCGATTTCTTCCCCAGCCCCTCCGACGAGGGCTGGCCCTTCGACTACAGGAGCAGGGAAGGCGCCATATACTGCAACGGCGCAGTTCATTGGATAAGAGAGAGAGGGGAAGCAAGCTTGTCATTCTGCTTATTCCCAGGTGGTAGGTTTGAATTCAAAAGAAAGGAAACTGATGTGCTGAACTACTTCGACATAGGCCAAGAGCGTTTGCTGGTCGCTTCAGCTACCCCTCCTGTCCCCTTGGTTGTCAAGAACATTGAGGTGAAGGTTAATGATTTTGGCAGCACGCTTCCTACTGAGTGGCCGTTATTGACTCAGAGATATTTTGGGGAGTGTGGTGGCTGTTTGTACTTGATTGAGACTTTTAAGCATTGCAACACTCAATTTGACGTCATGGAGATGGAGAGGGGCTACTCTGGCTGGCTTGTCAAATTGAGCATTGGTGACTCTGAATCCCACTTAGTGGAGGACTTGAGGGGATTCCAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

215

Amino Acids

24.89

Weight (kDa)

5.39

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 7 - 121 2e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
AatII GACGTC 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 619
AclWI GGATC 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 458
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 360
AcyI GRCGYC 2 cut(s) 219, 546
AdeI CACNNNGTG 1 cut(s) 619
AfaI GTAC 2 cut(s) 21, 506
AfiI CCNNNNNNNGG 2 cut(s) 147, 619
AgsI TTSAA 2 cut(s) 308, 313
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 273, 380
AluI AGCT 2 cut(s) 273, 380
Alw26I GTCTC 3 cut(s) 131, 161, 509
AlwI GGATC 1 cut(s) 35
AoxI GGCC 3 cut(s) 191, 352, 458
ApeKI GCWGC 1 cut(s) 438
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 221, 239
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 430, 611
BanI GGYRCC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 450
BccI CCATC 1 cut(s) 550
BceAI ACGGC 2 cut(s) 250, 445
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 3 cut(s) 131, 161, 509
BfmI CTRYAG 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 92
BisI GCNGC 1 cut(s) 439
BlsI GCNGC 1 cut(s) 440
Bme1390I CCNGG 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 107, 220
BmrFI CCNGG 1 cut(s) 294
BsaHI GRCGYC 2 cut(s) 219, 546
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 292, 396
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 619
Bse3DI GCAATG 1 cut(s) 526
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 292, 396
BseLI CCNNNNNNNGG 2 cut(s) 147, 619
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 3 cut(s) 126, 444, 485
BseXI GCAGC 1 cut(s) 450
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 3 cut(s) 193, 354, 460
BshNI GGYRCC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 147, 619
BsmAI GTCTC 3 cut(s) 131, 161, 509
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 3 cut(s) 193, 354, 460
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 40
BspANI GGCC 3 cut(s) 193, 354, 460
BspCNI CTCAG 3 cut(s) 127, 445, 484
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 107, 220
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 526
BssECI CCNNGG 2 cut(s) 292, 396
BssMI GATC 1 cut(s) 40
BssNI GRCGYC 2 cut(s) 219, 546
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 294
BstACI GRCGYC 2 cut(s) 219, 546
BstC8I GCNNGC 5 cut(s) 110, 191, 271, 443, 578
BstDEI CTNAG 4 cut(s) 135, 453, 471, 616
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 221, 239
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 3 cut(s) 131, 161, 509
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 216, 573
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 450
BsuRI GGCC 3 cut(s) 193, 354, 460
BtgZI GCGATG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 5 cut(s) 110, 191, 271, 443, 578
CciI TCATGA 1 cut(s) 97
CfoI GCGC 2 cut(s) 221, 239
Cfr13I GGNCC 1 cut(s) 192
CseI GACGC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 20, 505
CviAII CATG 2 cut(s) 98, 550
CviQI GTAC 2 cut(s) 20, 505
DdeI CTNAG 4 cut(s) 135, 453, 471, 616
DinI GGCGCC 1 cut(s) 220
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DraIII CACNNNGTG 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 396
EgeI GGCGCC 1 cut(s) 220
EheI GGCGCC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 2 cut(s) 101, 553
FaiI YATR 8 cut(s) 8, 99, 125, 127, 224, 226, 350, 551
FaqI GGGAC 1 cut(s) 377
FatI CATG 2 cut(s) 97, 549
Fnu4HI GCNGC 1 cut(s) 439
Fsp4HI GCNGC 1 cut(s) 439
GlaI GCGC 2 cut(s) 220, 238
GluI GCNGC 1 cut(s) 439
GsaI CCCAGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 3 cut(s) 193, 354, 460
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 143
HhaI GCGC 2 cut(s) 221, 239
Hin1I GRCGYC 2 cut(s) 219, 546
Hin1II CATG 2 cut(s) 101, 553
Hin6I GCGC 2 cut(s) 219, 237
HinP1I GCGC 2 cut(s) 219, 237
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 4 cut(s) 469, 602, 608, 636
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 430, 611
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 4 cut(s) 136, 181, 474, 607
Hpy188III TCNNGA 3 cut(s) 98, 158, 406
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 4 cut(s) 54, 205, 209, 415
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 2 cut(s) 231, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 573
HpyF3I CTNAG 4 cut(s) 135, 453, 471, 616
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 2 cut(s) 219, 546
Hsp92II CATG 2 cut(s) 101, 553
HspAI GCGC 2 cut(s) 219, 237
KasI GGCGCC 1 cut(s) 218
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 2 cut(s) 105, 207
Lsp1109I GCAGC 1 cut(s) 450
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 599
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 1 cut(s) 157
MluCI AATT 3 cut(s) 308, 539, 587
Mly113I GGCGCC 1 cut(s) 219
MlyI GAGTC 2 cut(s) 463, 596
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 9 cut(s) 66, 178, 187, 254, 396, 409, 555, 616, 624
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 2 cut(s) 426, 522
MslI CAYNNNNRTG 2 cut(s) 416, 554
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 216, 573
NarI GGCGCC 1 cut(s) 219
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 101, 553
NlaIV GGNNCC 2 cut(s) 107, 220
NmuCI GTSAC 1 cut(s) 599
PagI TCATGA 1 cut(s) 97
PaqCI CACCTGC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 608, 636
PflMI CCANNNNNTGG 1 cut(s) 619
PkrI GCNGC 1 cut(s) 440
PleI GAGTC 2 cut(s) 463, 596
PluTI GGCGCC 1 cut(s) 222
PpsI GAGTC 2 cut(s) 463, 596
Psp6I CCWGG 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 107, 220
PspPI GGNCC 1 cut(s) 192
RsaI GTAC 2 cut(s) 21, 506
RsaNI GTAC 2 cut(s) 20, 505
RseI CAYNNNNRTG 2 cut(s) 416, 554
SaqAI TTAA 2 cut(s) 426, 522
SatI GCNGC 1 cut(s) 439
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 2 cut(s) 463, 596
ScrFI CCNGG 1 cut(s) 294
SetI ASST 9 cut(s) 69, 86, 275, 298, 305, 382, 420, 426, 549
SfcI CTRYAG 1 cut(s) 202
SfoI GGCGCC 1 cut(s) 220
SmiMI CAYNNNNRTG 2 cut(s) 416, 554
SmlI CTYRAG 1 cut(s) 628
SmoI CTYRAG 1 cut(s) 628
Sse9I AATT 3 cut(s) 308, 539, 587
SspDI GGCGCC 1 cut(s) 218
SspI AATATT 1 cut(s) 644
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 396
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 159, 198, 345
TasI AATT 3 cut(s) 308, 539, 587
TatI WGTACW 1 cut(s) 504
TfiI GAWTC 2 cut(s) 608, 636
Tru1I TTAA 2 cut(s) 426, 522
Tru9I TTAA 2 cut(s) 426, 522
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 1 cut(s) 438
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 619
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 341
ZraI GACGTC 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.