Rmu_co8138914.1_g000001

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8138914.1
OG0000449
Physical Location & Seq
Reverse (-)
2 .. 602
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8138914.1_g000001.1.cds

Sequence Viewer

Length: 601 bp
atgcatatgtttgtgaggtatggtttggctttcgacccttcgaaatcgcctcattacactgtggtgtgtgtcagtcacgacattctccgcggcaagcgccacagcatagagatatattcgtcggagacgggaacttgggtgaagcgtttcaaggctcttttcttccctagcccttccgacgagggcaggcacattgatactcgcagaatgcctatgcattttgatgagaggagcagggaaggggcagtgtattgcaacggcgcaattcattggataagaaacagatgggatgcgagcctgccattctgcttggagacagatggtgtggtcgaaacagttggattcgaaagaagtaaattggatgtgttgcactactatgacataggtgaagaaagtctgcggctcgctgctgctactcctccagttcctttggttgtgaaaaacattccgttggggaaagaacaaaactttcctactgagtttccccatttgattgatagatgctttggcgagtcaggtggtggctgtttgtatttgattgaggtttttgagcattgtaagactcaatttgaggtgatggagatggagagggactactctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

200

Amino Acids

23.11

Weight (kDa)

5.92

Isoelectric Point (pI)

67.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 3 cut(s) 88, 90, 400
AgsI TTSAA 1 cut(s) 151
AleI CACNNNNGTG 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 119, 308
ApeKI GCWGC 2 cut(s) 407, 410
Asp700I GAANNNNTTC 1 cut(s) 146
AspLEI GCGC 2 cut(s) 99, 263
AsuHPI GGTGA 3 cut(s) 151, 398, 586
AsuII TTCGAA 2 cut(s) 41, 345
BbvI GCAGC 2 cut(s) 394, 397
BccI CCATC 4 cut(s) 279, 314, 571, 577
BceAI ACGGC 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 119, 308
BfaI CTAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 100
BisI GCNGC 4 cut(s) 91, 401, 408, 411
BlsI GCNGC 4 cut(s) 92, 402, 409, 412
BmsI GCATC 2 cut(s) 280, 491
BpmI CTGGAG 1 cut(s) 405
Bpu14I TTCGAA 2 cut(s) 41, 345
BsaJI CCNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 295, 367
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 2 cut(s) 244, 408
BseXI GCAGC 2 cut(s) 394, 397
Bsh1236I CGCG 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 119, 308
BsmBI CGTCTC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 213
Bsp119I TTCGAA 2 cut(s) 41, 345
BspACI CCGC 3 cut(s) 88, 90, 400
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 1 cut(s) 90
BspT104I TTCGAA 2 cut(s) 41, 345
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 61, 337
BstBI TTCGAA 2 cut(s) 41, 345
BstC8I GCNNGC 5 cut(s) 95, 188, 295, 299, 405
BstDEI CTNAG 1 cut(s) 477
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 2 cut(s) 295, 367
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 99, 263
BstMAI GTCTC 2 cut(s) 119, 308
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 394, 397
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 295, 367
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 57, 252
Cac8I GCNNGC 5 cut(s) 95, 188, 295, 299, 405
CfoI GCGC 2 cut(s) 99, 263
Cfr42I CCGCGG 1 cut(s) 91
CviJI RGCY 6 cut(s) 29, 155, 171, 297, 403, 525
CviKI_1 RGCY 6 cut(s) 29, 155, 171, 297, 403, 525
DdeI CTNAG 1 cut(s) 477
EcoT22I ATGCAT 2 cut(s) 6, 219
Esp3I CGTCTC 1 cut(s) 119
FaiI YATR 8 cut(s) 6, 8, 21, 107, 115, 215, 378, 383
FauNDI CATATG 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 91, 401, 408, 411
FokI GGATG 2 cut(s) 302, 374
Fsp4HI GCNGC 4 cut(s) 91, 401, 408, 411
FspBI CTAG 1 cut(s) 168
GlaI GCGC 2 cut(s) 98, 262
GluI GCNGC 4 cut(s) 91, 401, 408, 411
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 100
HhaI GCGC 2 cut(s) 99, 263
Hin6I GCGC 2 cut(s) 97, 261
HinP1I GCGC 2 cut(s) 97, 261
HinfI GANTC 3 cut(s) 342, 512, 562
HphI GGTGA 3 cut(s) 151, 398, 586
Hpy188I TCNGA 2 cut(s) 124, 178
Hpy188III TCNNGA 1 cut(s) 77
Hpy99I CGWCG 2 cut(s) 124, 182
HpyAV CCTTC 3 cut(s) 48, 183, 233
HpyCH4III ACNGT 2 cut(s) 61, 337
HpyCH4V TGCA 4 cut(s) 4, 217, 255, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 477
HspAI GCGC 2 cut(s) 97, 261
KspI CCGCGG 1 cut(s) 91
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 5 cut(s) 172, 220, 311, 435, 501
Lsp1109I GCAGC 2 cut(s) 394, 397
LweI GCATC 2 cut(s) 280, 491
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 2 cut(s) 154, 401
MluCI AATT 3 cut(s) 264, 356, 566
MlyI GAGTC 2 cut(s) 521, 556
MmeI TCCRAC 3 cut(s) 102, 201, 319
MnlI CCTC 8 cut(s) 9, 60, 175, 222, 429, 535, 565, 582
Mph1103I ATGCAT 2 cut(s) 6, 219
MroXI GAANNNNTTC 1 cut(s) 146
MslI CAYNNNNRTG 3 cut(s) 62, 222, 375
MspA1I CMGCKG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 213
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeI CATATG 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 74
NsiI ATGCAT 2 cut(s) 6, 219
NspV TTCGAA 2 cut(s) 41, 345
OliI CACNNNNGTG 1 cut(s) 62
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 342
PkrI GCNGC 4 cut(s) 92, 402, 409, 412
PleI GAGTC 2 cut(s) 520, 556
PpsI GAGTC 2 cut(s) 520, 556
RseI CAYNNNNRTG 3 cut(s) 62, 222, 375
SacII CCGCGG 1 cut(s) 91
SatI GCNGC 4 cut(s) 91, 401, 408, 411
SchI GAGTC 2 cut(s) 521, 556
SetI ASST 5 cut(s) 20, 388, 520, 546, 576
SfaNI GCATC 2 cut(s) 280, 491
Sfr303I CCGCGG 1 cut(s) 91
SfuI TTCGAA 2 cut(s) 41, 345
SgrBI CCGCGG 1 cut(s) 91
SmiMI CAYNNNNRTG 3 cut(s) 62, 222, 375
Sse9I AATT 3 cut(s) 264, 356, 566
SsiI CCGC 3 cut(s) 88, 90, 400
SspMI CTAG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 61, 337
TaqI TCGA 4 cut(s) 33, 41, 330, 345
TasI AATT 3 cut(s) 264, 356, 566
TauI GCSGC 2 cut(s) 93, 403
TfiI GAWTC 1 cut(s) 342
TscAI CASTG 2 cut(s) 64, 252
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 407, 410
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 2 cut(s) 64, 252
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 1 cut(s) 168
Zsp2I ATGCAT 2 cut(s) 6, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.