Rorug03G0314100

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000449
Physical Location & Seq
Reverse (-)
33685448 .. 33708751
23304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0314100.1

Sequence Viewer

Length: 1107 bp
ATGAATTCCTCCTCACTGATGTTGCGTCGGTTCTTGTGCTTCAATGCCTCGCCTCCATCTTCTTCTTCTCCTATTCTATGCTTCTCTTCCAACAGGAATAGGAAGCCCCTCGTCTTCTTAGGCTCTCCTCAGGTCTCTGCAACTGTTCTTGACGCCCTGCTGAATGCATCCGGTGCCCTAGATTCTCTGTTTGAGGTTGCAGCAATTGTGACTCAACCACCTTCCAGGAAGAATAGGGGGAAGAAGGTGCTGCCGTCTCCTTTAGCACAACATGCTCTTGACAGAGGCTTTCCTTCAGACCTCATTTTCGCACCTGCACGAGCTGGAGAGGATATGTTCCTGTCCAGCTTAAGAGCTTTGCAGCCAGAACTTTGCATCACTGCCGCATATGGGAACATTTTACCTAGCAAGTTTCTTAATATCCCGACTTTGGGCACAGTAAATATACACCCAAGTTTGCTGCCGTTGTATCGTGGTGCAGCACCTGTTCAAAGAGCTTTGCAGGATGGTGTCAAAGAAACAGGAGTATCCTTAGCATTTACTGTCCGTGCGCTGGATGCTGGACCTGTGATAGCCAGTCAAAGACTGGAAATTGATGATCAAATTAAGGCACCAGATTTGCTTGCTCTCCTATTTTCTGAAGGATCCAAACTATTGATTCACCAGCTTCCTTCCATATTTGATGGTTCAGCTAAATTAAAAGCGCAGTCCCAGGATGACTCTAAAGCTACATTAGCTCCAAAGATTTCTCCTGAGGAGTCATGGCTATCATTTGATCAGCAAGCTGTAGTCCTACATAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACTCGAGCTAAAGTTGTAGTTGTTGACAACAAAAATGGTCACCGCAATATACTGGAGCTTAAAATTATCACAACCAAAGTTTGCAGCCAAAGCAATATTCATTTCAACCAAGCAGATGACATCTCTTTTCAAAAGGGTGCATTAGTATTCCCCTGTGGTGGGTCCACATCACTAGAGGTGCTGGAGATTCAGCTTCCTGGTAAGAAGGTTATGAATGCAGCTGCCTTCTGGAACGGTTTACGTGGTCAACAACTTAAAAGATTTGTTGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

368

Amino Acids

39.77

Weight (kDa)

9.38

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 39 - 219 2.3e-31 Formyl transferase
Formyl_trans_C PF02911 248 - 357 4.3e-17 Formyl transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
AccB1I GGYRCC 2 cut(s) 173, 610
AciI CCGC 2 cut(s) 384, 874
AclWI GGATC 2 cut(s) 639, 652
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 279, 660
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 6 cut(s) 390, 430, 431, 553, 989, 990
AflII CTTAAG 1 cut(s) 349
AgsI TTSAA 4 cut(s) 43, 491, 937, 962
AjnI CCWGG 4 cut(s) 224, 711, 826, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 912, 944
Alw26I GTCTC 2 cut(s) 139, 261
AlwI GGATC 2 cut(s) 639, 652
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 834
AoxI GGCC 1 cut(s) 824
ApeKI GCWGC 8 cut(s) 200, 250, 361, 460, 479, 915, 1049, 1052
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 2 cut(s) 553, 706
AspS9I GGNCC 2 cut(s) 563, 993
AsuHPI GGTGA 2 cut(s) 653, 863
AvaI CYCGRG 1 cut(s) 834
AvaII GGWCC 2 cut(s) 563, 993
AxyI CCTNAGG 2 cut(s) 129, 753
BaeGI GKGCMC 2 cut(s) 178, 437
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BamHI GGATCC 1 cut(s) 644
BanI GGYRCC 2 cut(s) 173, 610
BauI CACGAG 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 106
BbvI GCAGC 8 cut(s) 212, 237, 373, 447, 491, 927, 1039, 1061
BccI CCATC 4 cut(s) 64, 500, 677, 816
BceAI ACGGC 2 cut(s) 238, 448
BciT130I CCWGG 4 cut(s) 226, 713, 828, 1029
BciVI GTATCC 1 cut(s) 538
BclI TGATCA 2 cut(s) 598, 775
BcoDI GTCTC 2 cut(s) 139, 261
BfaI CTAG 3 cut(s) 179, 405, 1004
BfmI CTRYAG 1 cut(s) 786
BfrI CTTAAG 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 322
BfuI GTATCC 1 cut(s) 538
BisI GCNGC 9 cut(s) 201, 251, 362, 384, 461, 480, 916, 1050, 1053
BlsI GCNGC 9 cut(s) 202, 252, 363, 385, 462, 481, 917, 1051, 1054
Bme1390I CCNGG 4 cut(s) 226, 713, 828, 1029
Bme18I GGWCC 2 cut(s) 563, 993
BmeT110I CYCGRG 1 cut(s) 834
BmgT120I GGNCC 2 cut(s) 563, 993
BmiI GGNNCC 4 cut(s) 175, 612, 646, 994
BmrFI CCNGG 4 cut(s) 226, 713, 828, 1029
BmsI GCATC 3 cut(s) 176, 384, 547
BpiI GAAGAC 1 cut(s) 106
BpmI CTGGAG 3 cut(s) 345, 905, 1034
Bpu10I CCTNAGC 1 cut(s) 532
BsaAI YACGTR 1 cut(s) 1073
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 711
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 6 cut(s) 390, 430, 431, 553, 989, 990
Bse1I ACTGG 3 cut(s) 576, 591, 888
Bse21I CCTNAGG 2 cut(s) 129, 753
BseBI CCWGG 4 cut(s) 226, 713, 828, 1029
BseDI CCNNGG 1 cut(s) 711
BseGI GGATG 5 cut(s) 167, 511, 562, 721, 827
BseLI CCNNNNNNNGG 6 cut(s) 390, 430, 431, 553, 989, 990
BseMII CTCAG 2 cut(s) 143, 744
BseNI ACTGG 3 cut(s) 576, 591, 888
BseRI GAGGAG 2 cut(s) 117, 770
BseSI GKGCMC 2 cut(s) 178, 437
BseXI GCAGC 8 cut(s) 212, 237, 373, 447, 491, 927, 1039, 1061
BsgI GTGCAG 2 cut(s) 300, 498
BshFI GGCC 1 cut(s) 826
BshNI GGYRCC 2 cut(s) 173, 610
BsiHKCI CYCGRG 1 cut(s) 834
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 694
BslI CCNNNNNNNGG 6 cut(s) 390, 430, 431, 553, 989, 990
BsmAI GTCTC 2 cut(s) 139, 261
BsmBI CGTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 694
BsmI GAATGC 2 cut(s) 169, 1051
BsnI GGCC 1 cut(s) 826
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 178, 437
Bsp143I GATC 3 cut(s) 598, 644, 775
BspACI CCGC 2 cut(s) 384, 874
BspANI GGCC 1 cut(s) 826
BspCNI CTCAG 2 cut(s) 142, 745
BspLI GGNNCC 4 cut(s) 175, 612, 646, 994
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 2 cut(s) 639, 652
BspT107I GGYRCC 2 cut(s) 173, 610
BspTI CTTAAG 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 139
BsrI ACTGG 3 cut(s) 576, 591, 888
BssECI CCNNGG 1 cut(s) 711
BssMI GATC 3 cut(s) 598, 644, 775
BssNI GRCGYC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 4 cut(s) 226, 713, 828, 1029
Bst4CI ACNGT 4 cut(s) 145, 439, 544, 1067
Bst6I CTCTTC 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 349
BstAPI GCANNNNNTGC 2 cut(s) 173, 272
BstBAI YACGTR 1 cut(s) 1073
BstC8I GCNNGC 2 cut(s) 624, 783
BstDEI CTNAG 4 cut(s) 118, 129, 532, 753
BstEII GGTNACC 1 cut(s) 869
BstF5I GGATG 5 cut(s) 167, 511, 562, 721, 827
BstHHI GCGC 2 cut(s) 553, 706
BstKTI GATC 3 cut(s) 601, 647, 778
BstMAI GTCTC 2 cut(s) 139, 261
BstMBI GATC 3 cut(s) 598, 644, 775
BstMWI GCNNNNNNNGC 5 cut(s) 173, 272, 557, 734, 921
BstNI CCWGG 4 cut(s) 226, 713, 828, 1029
BstNSI RCATGY 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 869
BstSCI CCNGG 4 cut(s) 224, 711, 826, 1027
BstSFI CTRYAG 1 cut(s) 786
BstSLI GKGCMC 2 cut(s) 178, 437
BstV1I GCAGC 8 cut(s) 212, 237, 373, 447, 491, 927, 1039, 1061
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 644
BstYI RGATCY 1 cut(s) 644
Bsu36I CCTNAGG 2 cut(s) 129, 753
BsuI GTATCC 1 cut(s) 538
BsuRI GGCC 1 cut(s) 826
BtsCI GGATG 5 cut(s) 167, 511, 562, 721, 827
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 14, 378
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 624, 783
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 2 cut(s) 553, 706
Cfr13I GGNCC 2 cut(s) 563, 993
CseI GACGC 2 cut(s) 14, 161
CviAII CATG 2 cut(s) 272, 762
DdeI CTNAG 4 cut(s) 118, 129, 532, 753
DpnI GATC 3 cut(s) 600, 646, 777
DpnII GATC 3 cut(s) 598, 644, 775
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 563, 993
Eco57I CTGAAG 2 cut(s) 279, 660
Eco81I CCTNAGG 2 cut(s) 129, 753
Eco88I CYCGRG 1 cut(s) 834
Eco91I GGTNACC 1 cut(s) 869
EcoO65I GGTNACC 1 cut(s) 869
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 4 cut(s) 224, 711, 826, 1027
EcoT22I ATGCAT 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 2 cut(s) 275, 765
FaqI GGGAC 1 cut(s) 694
FatI CATG 2 cut(s) 271, 761
FauNDI CATATG 1 cut(s) 388
FbaI TGATCA 2 cut(s) 598, 775
Fnu4HI GCNGC 9 cut(s) 201, 251, 362, 384, 461, 480, 916, 1050, 1053
FokI GGATG 5 cut(s) 154, 518, 569, 728, 834
Fsp4HI GCNGC 9 cut(s) 201, 251, 362, 384, 461, 480, 916, 1050, 1053
FspBI CTAG 3 cut(s) 179, 405, 1004
GlaI GCGC 2 cut(s) 552, 705
GluI GCNGC 9 cut(s) 201, 251, 362, 384, 461, 480, 916, 1050, 1053
GsuI CTGGAG 3 cut(s) 345, 905, 1034
HaeIII GGCC 1 cut(s) 826
HapII CCGG 1 cut(s) 171
HgaI GACGC 2 cut(s) 14, 161
HhaI GCGC 2 cut(s) 553, 706
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 275, 765
Hin6I GCGC 2 cut(s) 551, 704
HinP1I GCGC 2 cut(s) 551, 704
HincII GTYRAC 2 cut(s) 856, 1079
HindII GTYRAC 2 cut(s) 856, 1079
HinfI GANTC 6 cut(s) 182, 211, 658, 719, 758, 1018
HpaII CCGG 1 cut(s) 171
HphI GGTGA 2 cut(s) 653, 863
Hpy166II GTNNAC 4 cut(s) 856, 996, 1070, 1079
Hpy188I TCNGA 2 cut(s) 298, 640
Hpy188III TCNNGA 5 cut(s) 149, 278, 424, 752, 1060
Hpy8I GTNNAC 4 cut(s) 856, 996, 1070, 1079
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 7 cut(s) 231, 238, 303, 635, 681, 1030, 1066
HpyCH4III ACNGT 4 cut(s) 145, 439, 544, 1067
HpyCH4IV ACGT 1 cut(s) 1072
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 272, 557, 734, 921
HpyF3I CTNAG 4 cut(s) 118, 129, 532, 753
HpySE526I ACGT 1 cut(s) 1072
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 275, 765
HspAI GCGC 2 cut(s) 551, 704
Ksp22I TGATCA 2 cut(s) 598, 775
Kzo9I GATC 3 cut(s) 598, 644, 775
LmnI GCTCC 2 cut(s) 742, 886
Lsp1109I GCAGC 8 cut(s) 212, 237, 373, 447, 491, 927, 1039, 1061
LweI GCATC 3 cut(s) 176, 384, 547
MaeI CTAG 3 cut(s) 179, 405, 1004
MaeII ACGT 1 cut(s) 1072
MaeIII GTNAC 2 cut(s) 208, 869
MalI GATC 3 cut(s) 600, 646, 777
MboI GATC 3 cut(s) 598, 644, 775
MboII GAAGA 7 cut(s) 51, 54, 57, 78, 106, 241, 253
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 644
MhlI GDGCHC 2 cut(s) 178, 437
MluCI AATT 6 cut(s) 4, 204, 591, 603, 695, 894
MlyI GAGTC 3 cut(s) 205, 713, 767
MmeI TCCRAC 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 6 cut(s) 350, 417, 606, 698, 891, 1086
MspA1I CMGCKG 1 cut(s) 1052
MspCI CTTAAG 1 cut(s) 349
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 4 cut(s) 226, 713, 828, 1029
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 2 cut(s) 169, 1051
MvaI CCWGG 4 cut(s) 226, 713, 828, 1029
MwoI GCNNNNNNNGC 5 cut(s) 173, 272, 557, 734, 921
NdeI CATATG 1 cut(s) 388
NdeII GATC 3 cut(s) 598, 644, 775
NlaIII CATG 2 cut(s) 275, 765
NlaIV GGNNCC 4 cut(s) 175, 612, 646, 994
NmuCI GTSAC 2 cut(s) 208, 869
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 834
PaqCI CACCTGC 1 cut(s) 322
PctI GAATGC 2 cut(s) 169, 1051
PfeI GAWTC 3 cut(s) 182, 658, 1018
PfoI TCCNGGA 1 cut(s) 224
PkrI GCNGC 9 cut(s) 202, 252, 363, 385, 462, 481, 917, 1051, 1054
PleI GAGTC 3 cut(s) 205, 713, 766
PpsI GAGTC 3 cut(s) 205, 713, 766
Ppu21I YACGTR 1 cut(s) 1073
Psp6I CCWGG 4 cut(s) 224, 711, 826, 1027
PspEI GGTNACC 1 cut(s) 869
PspGI CCWGG 4 cut(s) 224, 711, 826, 1027
PspN4I GGNNCC 4 cut(s) 175, 612, 646, 994
PspPI GGNCC 2 cut(s) 563, 993
PspXI VCTCGAGB 1 cut(s) 834
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 644
PvuII CAGCTG 1 cut(s) 1052
SaqAI TTAA 6 cut(s) 350, 417, 606, 698, 891, 1086
SatI GCNGC 9 cut(s) 201, 251, 362, 384, 461, 480, 916, 1050, 1053
Sau3AI GATC 3 cut(s) 598, 644, 775
Sau96I GGNCC 2 cut(s) 563, 993
SchI GAGTC 3 cut(s) 205, 713, 767
ScrFI CCNGG 4 cut(s) 226, 713, 828, 1029
SduI GDGCHC 2 cut(s) 178, 437
SfaNI GCATC 3 cut(s) 176, 384, 547
SfcI CTRYAG 1 cut(s) 786
Sfr274I CTCGAG 1 cut(s) 834
SinI GGWCC 2 cut(s) 563, 993
SlaI CTCGAG 1 cut(s) 834
SmlI CTYRAG 2 cut(s) 349, 834
SmoI CTYRAG 2 cut(s) 349, 834
Sse9I AATT 6 cut(s) 4, 204, 591, 603, 695, 894
SsiI CCGC 2 cut(s) 384, 874
SspI AATATT 1 cut(s) 928
SspMI CTAG 3 cut(s) 179, 405, 1004
StyD4I CCNGG 4 cut(s) 224, 711, 826, 1027
TaaI ACNGT 4 cut(s) 145, 439, 544, 1067
TaiI ACGT 1 cut(s) 1075
TaqI TCGA 1 cut(s) 835
TasI AATT 6 cut(s) 4, 204, 591, 603, 695, 894
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 3 cut(s) 182, 658, 1018
Tru1I TTAA 6 cut(s) 350, 417, 606, 698, 891, 1086
Tru9I TTAA 6 cut(s) 350, 417, 606, 698, 891, 1086
TscAI CASTG 2 cut(s) 21, 385
TseFI GTSAC 2 cut(s) 208, 869
TseI GCWGC 8 cut(s) 200, 250, 361, 460, 479, 915, 1049, 1052
Tsp45I GTSAC 2 cut(s) 208, 869
TspDTI ATGAA 3 cut(s) 17, 920, 1058
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 2 cut(s) 21, 385
Vha464I CTTAAG 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 563, 993
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 583
XhoI CTCGAG 1 cut(s) 834
XspI CTAG 3 cut(s) 179, 405, 1004
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.