Rh4BG017700

F-box protein At5g07610-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
2763276 .. 2763602
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG017700.1

Sequence Viewer

Length: 327 bp
ATGGAGATGGAGAGGGACTACTCTGGCTGGTTTGTCAAGTATCATGTTGATCTTCATTCGGTATTCACAGCTCTTCCTGATCCGAATGATTTTGTCATCTTGTGCCTCTCTCAAGAGAAGGAAAAACATAAAGAGGAGGATTCTTCAGCTGATCTTTTGTTGTATATGCCAGATAAGGTCATATCTTATAATCCGAGGAATAAGACCTTCAAGGCATCTGTTGTGGAGTTGGCCAATGAAGAACTTCTTGCTATGGATGGTCGATTCTATAGGGATGAGGTTGTTATGTATCCTTACATGGAGGGTTTAGCTTGTGTGGAACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.69

Weight (kDa)

4.69

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 129
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 3 cut(s) 71, 149, 311
AluI AGCT 3 cut(s) 71, 149, 311
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 231
Asp700I GAANNNNTTC 1 cut(s) 243
BalI TGGCCA 1 cut(s) 233
BccI CCATC 1 cut(s) 251
BciVI GTATCC 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 268
BfuI GTATCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 262, 280
BseRI GAGGAG 1 cut(s) 149
BshFI GGCC 1 cut(s) 233
BslFI GGGAC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 233
Bsp143I GATC 3 cut(s) 49, 79, 151
BspANI GGCC 1 cut(s) 233
BspPI GGATC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 3 cut(s) 49, 79, 151
Bst6I CTCTTC 1 cut(s) 78
BstF5I GGATG 2 cut(s) 262, 280
BstKTI GATC 3 cut(s) 52, 82, 154
BstMBI GATC 3 cut(s) 49, 79, 151
BstSFI CTRYAG 1 cut(s) 268
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 2 cut(s) 262, 280
CviAII CATG 2 cut(s) 44, 298
CviJI RGCY 5 cut(s) 27, 71, 149, 233, 311
CviKI_1 RGCY 5 cut(s) 27, 71, 149, 233, 311
DpnI GATC 3 cut(s) 51, 81, 153
DpnII GATC 3 cut(s) 49, 79, 151
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 129
FaeI CATG 2 cut(s) 47, 301
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 43, 297
FokI GGATG 2 cut(s) 269, 287
HaeIII GGCC 1 cut(s) 233
Hin1II CATG 2 cut(s) 47, 301
HinfI GANTC 2 cut(s) 140, 264
Hpy188I TCNGA 2 cut(s) 84, 195
Hpy188III TCNNGA 2 cut(s) 77, 113
HpyAV CCTTC 2 cut(s) 112, 217
Hsp92II CATG 2 cut(s) 47, 301
Kzo9I GATC 3 cut(s) 49, 79, 151
LguI GCTCTTC 1 cut(s) 78
LpnPI CCDG 4 cut(s) 9, 13, 90, 183
LweI GCATC 1 cut(s) 224
MalI GATC 3 cut(s) 51, 81, 153
MboI GATC 3 cut(s) 49, 79, 151
MboII GAAGA 4 cut(s) 44, 65, 135, 251
MlsI TGGCCA 1 cut(s) 233
MluNI TGGCCA 1 cut(s) 233
MnlI CCTC 7 cut(s) 6, 116, 127, 130, 189, 271, 295
Mox20I TGGCCA 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 243
MscI TGGCCA 1 cut(s) 233
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 149
NdeII GATC 3 cut(s) 49, 79, 151
NlaIII CATG 2 cut(s) 47, 301
PciSI GCTCTTC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 140, 264
PsiI TTATAA 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 49, 79, 151
SetI ASST 6 cut(s) 73, 151, 180, 209, 282, 313
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
TaqI TCGA 1 cut(s) 262
TfiI GAWTC 2 cut(s) 140, 264
TspDTI ATGAA 2 cut(s) 44, 252
XmnI GAANNNNTTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.