FvH4_4g01370

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000449
Physical Location & Seq
Reverse (-)
1258911 .. 1260014
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01370.t1

Sequence Viewer

Length: 1104 bp
ATGTCATCGTCTTCAGCAGAAACGGTAGGGAAGCTCAGAATGTCATCATCATCAGCAGAGACTGTTGCCAACATCGAAGAGCTCCTCAAGCATATCCTTATATCGGTACCGGCTCTATCTCTGATCCGATTCAAGTCCGTCTCCAAACACTGGCTCTCTGTCATCTCCGACCCCGACTTCCGTCGCCGCCACACCCTCCGAAACCCTAACCCCAAAATCTCGGCTTTCTTCTCTCCCAAAACCAAACATGACGCCATCAACTCCGTCATCTCTCTCGGCAGCCCGGCCGGTAATCCCTTCAAAGATCTCACCAGCTCCGCCTTTGAGTTGAGGATTCTTCAGTCCTGTAATGGCCTCTTCCTCTGCTCTGTTGAAATCGCCGGAGAAGAAGAAACAAAGTATCCTCATCCGGTGTTTGTTGTCAATCCGACGACGAACGAATTCCGGGCTCTCTCTGCTCCAAGCCTTGTGAAATTGAGGAATGTGGATATGTTTGTGAGGTATGGCTTGGCTTTTGACCCTTCGAAATCGCCTCATTACACTGTGGTGTGTGTGAACCATGACATTAACCGCGGCAAGCGCCACAATGTGGAGATGTATTCGTCAGAGACCGGAGCTTGGGGGAGGAGTTTCAAGGCTCGTTTCTTCCCGAGCCCTTTGGACGAGAACCTTAGTATGATCAGAAAGGCTATGCATTTCGACGAAAGGAGCAGAAAAGGGGCAGTGTATTGCAATGGCGCAGTACATTGGATAAGAAACGGACGGAAATCAAGGTTGCCATTGGCCGTGCGCTGCAATGGCGAAAAGGAATTCATTAGAGATGAAGTGGATGTGTTGCGCTACTTTGACATAGGTGAAGAAAGCTTGCGACTCACTGCTGCTATCCCTCCTGTTCCTCTGGTTGTGAAGAATATGACATTGGACAATAACAAATTTCCTACTGTGTTTCCCAAATTGAGTCACAAATACTTTGGGGAGTCCGGTGGCGGCTGTTTGTACATGATTGAGGTTTTTGAGCATTGTAAGAATCAGTTTGAGGTGATGGAGATGGAGAGGGACTACTCTGGCTGGTTTGTCAAGTACATGTTGATCTCAGTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

368

Amino Acids

41.64

Weight (kDa)

9.21

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 26 - 62 6.7e-06 F-box domain
FBA_1 PF07734 104 - 289 1.8e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 106
AccB7I CCANNNNNTGG 2 cut(s) 150, 589
AccII CGCG 1 cut(s) 573
AciI CCGC 5 cut(s) 187, 318, 571, 573, 987
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 2 cut(s) 285, 783
AcsI RAATTY 3 cut(s) 440, 809, 932
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 252
AdeI CACNNNGTG 1 cut(s) 589
AfaI GTAC 4 cut(s) 108, 744, 998, 1082
AfiI CCNNNNNNNGG 4 cut(s) 103, 150, 589, 618
AflIII ACRYGT 1 cut(s) 1083
AgsI TTSAA 4 cut(s) 133, 301, 374, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 902, 934
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 5 cut(s) 34, 82, 315, 617, 864
AluI AGCT 5 cut(s) 34, 82, 315, 617, 864
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 3 cut(s) 53, 145, 602
AlwI GGATC 1 cut(s) 118
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 649
AoxI GGCC 3 cut(s) 285, 352, 783
ApeKI GCWGC 3 cut(s) 279, 792, 878
ApoI RAATTY 3 cut(s) 440, 809, 932
Asp700I GAANNNNTTC 1 cut(s) 440
Asp718I GGTACC 1 cut(s) 106
AspLEI GCGC 4 cut(s) 582, 740, 792, 840
AsuC2I CCSGG 2 cut(s) 284, 446
AsuHPI GGTGA 3 cut(s) 301, 866, 1051
AsuII TTCGAA 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 649
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 3 cut(s) 84, 451, 656
BbsI GAAGAC 1 cut(s) 3
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 291, 779, 865
BccI CCATC 3 cut(s) 263, 1036, 1042
BceAI ACGGC 1 cut(s) 770
BciVI GTATCC 1 cut(s) 411
BclI TGATCA 1 cut(s) 678
BcnI CCSGG 2 cut(s) 284, 446
BcoDI GTCTC 3 cut(s) 53, 145, 602
BfoI RGCGCY 1 cut(s) 583
BfuI GTATCC 1 cut(s) 411
BglII AGATCT 1 cut(s) 304
BisI GCNGC 6 cut(s) 187, 280, 574, 793, 879, 988
BlsI GCNGC 6 cut(s) 188, 281, 575, 794, 880, 989
Bme1390I CCNGG 2 cut(s) 284, 446
BmeT110I CYCGRG 1 cut(s) 649
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 284, 446
BoxI GACNNNNGTC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 3
Bpu14I TTCGAA 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 284, 446
BsaHI GRCGYC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 571
BsaWI WCCGGW 3 cut(s) 409, 611, 980
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 150, 589, 618
Bse118I RCCGGY 2 cut(s) 109, 287
Bse1I ACTGG 1 cut(s) 155
Bse3DI GCAATG 2 cut(s) 739, 802
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 2 cut(s) 406, 835
BseLI CCNNNNNNNGG 4 cut(s) 103, 150, 589, 618
BseMI GCAATG 2 cut(s) 739, 802
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 2 cut(s) 74, 640
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 291, 779, 865
Bsh1236I CGCG 1 cut(s) 573
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 287, 354, 785
BshNI GGYRCC 1 cut(s) 106
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 649
BsiSI CCGG 8 cut(s) 110, 284, 288, 381, 410, 445, 612, 981
BslFI GGGAC 1 cut(s) 1070
BslI CCNNNNNNNGG 4 cut(s) 103, 150, 589, 618
BsmAI GTCTC 3 cut(s) 53, 145, 602
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 1070
BsnI GGCC 3 cut(s) 287, 354, 785
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 3 cut(s) 84, 451, 656
Bsp1407I TGTACA 1 cut(s) 996
Bsp143I GATC 4 cut(s) 123, 304, 678, 1089
BspACI CCGC 5 cut(s) 187, 318, 571, 573, 987
BspANI GGCC 3 cut(s) 287, 354, 785
BspCNI CTCAG 1 cut(s) 48
BspFNI CGCG 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 118
BspQI GCTCTTC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 2 cut(s) 739, 802
BsrFI RCCGGY 2 cut(s) 109, 287
BsrGI TGTACA 1 cut(s) 996
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 2 cut(s) 109, 287
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 4 cut(s) 123, 304, 678, 1089
BssNI GRCGYC 1 cut(s) 252
Bst4CI ACNGT 4 cut(s) 25, 64, 544, 943
Bst6I CTCTTC 2 cut(s) 72, 362
BstACI GRCGYC 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 996
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 578, 866
BstDEI CTNAG 3 cut(s) 35, 671, 1093
BstDSI CCRYGG 1 cut(s) 571
BstF5I GGATG 2 cut(s) 406, 835
BstFNI CGCG 1 cut(s) 573
BstH2I RGCGCY 1 cut(s) 583
BstHHI GCGC 4 cut(s) 582, 740, 792, 840
BstKTI GATC 4 cut(s) 126, 307, 681, 1092
BstMAI GTCTC 3 cut(s) 53, 145, 602
BstMBI GATC 4 cut(s) 123, 304, 678, 1089
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 4 cut(s) 88, 455, 579, 798
BstNSI RCATGY 1 cut(s) 1087
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 282, 444
BstUI CGCG 1 cut(s) 573
BstV1I GCAGC 3 cut(s) 291, 779, 865
BstV2I GAAGAC 1 cut(s) 3
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BstZI CGGCCG 1 cut(s) 285
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 3 cut(s) 287, 354, 785
BtgI CCRYGG 1 cut(s) 571
BtsCI GGATG 2 cut(s) 406, 835
BtsI GCAGTG 2 cut(s) 729, 873
BtsIMutI CAGTG 4 cut(s) 148, 540, 729, 873
Cac8I GCNNGC 2 cut(s) 578, 866
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 4 cut(s) 582, 740, 792, 840
Cfr10I RCCGGY 2 cut(s) 109, 287
Cfr42I CCGCGG 1 cut(s) 574
CseI GACGC 1 cut(s) 260
Csp6I GTAC 4 cut(s) 107, 743, 997, 1081
CviAII CATG 4 cut(s) 248, 560, 1000, 1084
CviQI GTAC 4 cut(s) 107, 743, 997, 1081
DdeI CTNAG 3 cut(s) 35, 671, 1093
DpnI GATC 4 cut(s) 125, 306, 680, 1091
DpnII GATC 4 cut(s) 123, 304, 678, 1089
DraIII CACNNNGTG 1 cut(s) 589
EaeI YGGCCR 2 cut(s) 285, 783
EagI CGGCCG 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 72, 362
EarI CTCTTC 2 cut(s) 72, 362
EciI GGCGGA 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 82
EclXI CGGCCG 1 cut(s) 285
Eco24I GRGCYC 3 cut(s) 84, 451, 656
Eco31I GGTCTC 1 cut(s) 602
Eco52I CGGCCG 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 82
EcoRI GAATTC 2 cut(s) 440, 809
EcoT22I ATGCAT 1 cut(s) 696
EcoT38I GRGCYC 3 cut(s) 84, 451, 656
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 4 cut(s) 251, 563, 1003, 1087
FaqI GGGAC 1 cut(s) 1070
FatI CATG 4 cut(s) 247, 559, 999, 1083
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 6 cut(s) 187, 280, 574, 793, 879, 988
FokI GGATG 2 cut(s) 393, 842
FriOI GRGCYC 3 cut(s) 84, 451, 656
Fsp4HI GCNGC 6 cut(s) 187, 280, 574, 793, 879, 988
GlaI GCGC 4 cut(s) 581, 739, 791, 839
GluI GCNGC 6 cut(s) 187, 280, 574, 793, 879, 988
HaeII RGCGCY 1 cut(s) 583
HaeIII GGCC 3 cut(s) 287, 354, 785
HapII CCGG 8 cut(s) 110, 284, 288, 381, 410, 445, 612, 981
HgaI GACGC 1 cut(s) 260
HhaI GCGC 4 cut(s) 582, 740, 792, 840
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 4 cut(s) 251, 563, 1003, 1087
Hin6I GCGC 4 cut(s) 580, 738, 790, 838
HinP1I GCGC 4 cut(s) 580, 738, 790, 838
HindIII AAGCTT 1 cut(s) 862
HinfI GANTC 6 cut(s) 129, 334, 870, 958, 977, 1027
HpaII CCGG 8 cut(s) 110, 284, 288, 381, 410, 445, 612, 981
HphI GGTGA 3 cut(s) 301, 866, 1051
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 8 cut(s) 38, 123, 128, 169, 200, 429, 607, 683
Hpy188III TCNNGA 1 cut(s) 649
Hpy8I GTNNAC 1 cut(s) 556
Hpy99I CGWCG 4 cut(s) 186, 433, 436, 704
HpyAV CCTTC 2 cut(s) 307, 531
HpyCH4III ACNGT 4 cut(s) 25, 64, 544, 943
HpyCH4V TGCA 3 cut(s) 694, 732, 795
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 455, 579, 798
HpyF3I CTNAG 3 cut(s) 35, 671, 1093
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 4 cut(s) 251, 563, 1003, 1087
HspAI GCGC 4 cut(s) 580, 738, 790, 838
KpnI GGTACC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 678
KspI CCGCGG 1 cut(s) 574
Kzo9I GATC 4 cut(s) 123, 304, 678, 1089
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 5 cut(s) 87, 320, 463, 614, 708
Lsp1109I GCAGC 3 cut(s) 291, 779, 865
MaeIII GTNAC 1 cut(s) 959
MalI GATC 4 cut(s) 125, 306, 680, 1091
MboI GATC 4 cut(s) 123, 304, 678, 1089
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 3 cut(s) 84, 451, 656
MluCI AATT 5 cut(s) 440, 473, 809, 932, 953
MlyI GAGTC 3 cut(s) 864, 967, 986
MmeI TCCRAC 2 cut(s) 192, 452
Mph1103I ATGCAT 1 cut(s) 696
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 573
MspI CCGG 8 cut(s) 110, 284, 288, 381, 410, 445, 612, 981
MspR9I CCNGG 2 cut(s) 284, 446
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 4 cut(s) 88, 455, 579, 798
NciI CCSGG 2 cut(s) 284, 446
NdeII GATC 4 cut(s) 123, 304, 678, 1089
NlaIII CATG 4 cut(s) 251, 563, 1003, 1087
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 2 cut(s) 200, 255
NmuCI GTSAC 1 cut(s) 959
NsiI ATGCAT 1 cut(s) 696
NspI RCATGY 1 cut(s) 1087
NspV TTCGAA 1 cut(s) 524
OliI CACNNNNGTG 1 cut(s) 545
PciI ACATGT 1 cut(s) 1083
PciSI GCTCTTC 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 3 cut(s) 129, 334, 1027
PflMI CCANNNNNTGG 2 cut(s) 150, 589
PkrI GCNGC 6 cut(s) 188, 281, 575, 794, 880, 989
PleI GAGTC 3 cut(s) 864, 966, 985
PpsI GAGTC 3 cut(s) 864, 966, 985
PscI ACATGT 1 cut(s) 1083
PshAI GACNNNNGTC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 4 cut(s) 108, 744, 998, 1082
RsaNI GTAC 4 cut(s) 107, 743, 997, 1081
RseI CAYNNNNRTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 84
SacII CCGCGG 1 cut(s) 574
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 6 cut(s) 187, 280, 574, 793, 879, 988
Sau3AI GATC 4 cut(s) 123, 304, 678, 1089
SchI GAGTC 3 cut(s) 864, 967, 986
ScrFI CCNGG 2 cut(s) 284, 446
SduI GDGCHC 3 cut(s) 84, 451, 656
Sfr303I CCGCGG 1 cut(s) 574
SfuI TTCGAA 1 cut(s) 524
SgrBI CCGCGG 1 cut(s) 574
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 5 cut(s) 440, 473, 809, 932, 953
SsiI CCGC 5 cut(s) 187, 318, 571, 573, 987
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 282, 444
TaaI ACNGT 4 cut(s) 25, 64, 544, 943
TaqI TCGA 3 cut(s) 75, 524, 699
TasI AATT 5 cut(s) 440, 473, 809, 932, 953
TatI WGTACW 3 cut(s) 742, 996, 1080
TauI GCSGC 3 cut(s) 189, 576, 990
TfiI GAWTC 3 cut(s) 129, 334, 1027
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 4 cut(s) 155, 547, 729, 880
TseFI GTSAC 1 cut(s) 959
TseI GCWGC 3 cut(s) 279, 792, 878
Tsp45I GTSAC 1 cut(s) 959
TspDTI ATGAA 2 cut(s) 802, 837
TspGWI ACGGA 6 cut(s) 127, 170, 253, 774, 778, 1088
TspRI CASTG 4 cut(s) 155, 547, 729, 880
Van91I CCANNNNNTGG 2 cut(s) 150, 589
XapI RAATTY 3 cut(s) 440, 809, 932
XceI RCATGY 1 cut(s) 1087
XmnI GAANNNNTTC 1 cut(s) 440
Zsp2I ATGCAT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.