RLG00000014277

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000449
Physical Location & Seq
Forward (+)
50264266 .. 50265086
821 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014277

Sequence Viewer

Length: 705 bp
ATGACCTCCTTCTCTGCCTTTGCGGGACAACGAAAGAAAGAAGACATGATGTCGTATACGTTTTTAATCCCACAACCAACCAATTCCAGGCTATTTCTTCTCCAAGGGGGGCACCACCAAATAGATATATATTCATCTGAGACTGGAGAGTGGAAGCATCTCGATGCTCCTTTCTTCACAAGCCCCTTGCACTTTAACAGGATCATGGAAGGCACCGTATACTGCAACGACGCAGTTCATTGGGTAAGACACGTAGGGGGATACTTGTCATTCAGTGATGCTAGGAATGAATTCATAAGACACGAAGCTGATGTGCTGCGCTACTTTGACATAGGCCAAGAACGTCTGGGACTCGTGTCCGCTACCCCTCCTATCCCTTTGGTTGTCAGAAACATTTTGTTAAAGGATTCCGGTAAGTCTCCCAATGAATGGCCGACATTTGATCAAAGATATTTTGGGGAGTCTGGTGGCCATTTGTATTTAATTGAGACTTATAAGCATTGTAAGACCCAATTTGATGTGATGGAGATAGAGAGGGACTACTCTGGCTGGTTTGTCAAGTATCATGTTGAACTTAATCAGTCATTCACAGCTCTTCCTAGTTCGAATGCTTTTGTCATCTTGTGCCTTTCTCAAGAGAAGGAAAAACATAATGAGGAGGATTCTTCAGCTGATCTTTTGTTGCATATGCCAGGTATAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

235

Amino Acids

27.0

Weight (kDa)

5.7

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AccB1I GGYRCC 2 cut(s) 111, 212
AccB7I CCANNNNNTGG 1 cut(s) 429
AccI GTMKAC 2 cut(s) 56, 219
AciI CCGC 2 cut(s) 23, 360
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 2 cut(s) 431, 469
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 651
AfiI CCNNNNNNNGG 2 cut(s) 87, 429
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 1 cut(s) 572
AhdI GACNNNNNGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 86, 691
AluBI AGCT 3 cut(s) 308, 593, 671
AluI AGCT 3 cut(s) 308, 593, 671
Alw26I GTCTC 3 cut(s) 134, 423, 482
AlwI GGATC 1 cut(s) 209
AoxI GGCC 3 cut(s) 334, 431, 469
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 321
AsuII TTCGAA 1 cut(s) 605
BaeGI GKGCMC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 471
BanI GGYRCC 2 cut(s) 111, 212
BauI CACGAG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 303
BccI CCATC 1 cut(s) 517
BciT130I CCWGG 2 cut(s) 88, 693
BciVI GTATCC 1 cut(s) 254
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 3 cut(s) 134, 423, 482
BfaI CTAG 2 cut(s) 282, 600
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 2 cut(s) 88, 693
BmeRI GACNNNNNGTC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 113, 214
BmrFI CCNGG 2 cut(s) 88, 693
BmsI GCATC 3 cut(s) 154, 166, 268
BoxI GACNNNNGTC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 618
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 429
Bse1I ACTGG 1 cut(s) 148
BseBI CCWGG 2 cut(s) 88, 693
BseDI CCNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 87, 429
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 671
BseSI GKGCMC 1 cut(s) 114
BseXI GCAGC 1 cut(s) 303
BshFI GGCC 3 cut(s) 336, 433, 471
BshNI GGYRCC 2 cut(s) 111, 212
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 3 cut(s) 39, 363, 551
BslI CCNNNNNNNGG 2 cut(s) 87, 429
BsmAI GTCTC 3 cut(s) 134, 423, 482
BsmFI GGGAC 3 cut(s) 39, 363, 551
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 3 cut(s) 336, 433, 471
Bsp119I TTCGAA 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 201, 442, 673
BspACI CCGC 2 cut(s) 23, 360
BspANI GGCC 3 cut(s) 336, 433, 471
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 113, 214
BspPI GGATC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 600
BspT104I TTCGAA 1 cut(s) 605
BspT107I GGYRCC 2 cut(s) 111, 212
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 3 cut(s) 201, 442, 673
BssNAI GTATAC 2 cut(s) 57, 220
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 103
Bst1107I GTATAC 2 cut(s) 57, 220
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 2 cut(s) 88, 693
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 605
BstDEI CTNAG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 3 cut(s) 204, 445, 676
BstMAI GTCTC 3 cut(s) 134, 423, 482
BstMBI GATC 3 cut(s) 201, 442, 673
BstNI CCWGG 2 cut(s) 88, 693
BstPAI GACNNNNGTC 1 cut(s) 355
BstSCI CCNGG 2 cut(s) 86, 691
BstSLI GKGCMC 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 48
BstZ17I GTATAC 2 cut(s) 57, 220
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 3 cut(s) 336, 433, 471
BtsIMutI CAGTG 1 cut(s) 280
CfoI GCGC 1 cut(s) 321
CseI GACGC 1 cut(s) 239
CviAII CATG 3 cut(s) 46, 205, 566
CviJI RGCY 9 cut(s) 91, 183, 308, 336, 433, 471, 549, 593, 671
CviKI_1 RGCY 9 cut(s) 91, 183, 308, 336, 433, 471, 549, 593, 671
DdeI CTNAG 1 cut(s) 138
DpnI GATC 3 cut(s) 203, 444, 675
DpnII GATC 3 cut(s) 201, 442, 673
DriI GACNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 2 cut(s) 431, 469
Eam1104I CTCTTC 1 cut(s) 600
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 600
Eco130I CCWWGG 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 651
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 86, 691
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 3 cut(s) 49, 208, 569
FaqI GGGAC 3 cut(s) 39, 363, 551
FatI CATG 3 cut(s) 45, 204, 565
FauI CCCGC 1 cut(s) 16
FauNDI CATATG 1 cut(s) 687
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 2 cut(s) 56, 219
Fnu4HI GCNGC 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 2 cut(s) 282, 600
GlaI GCGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 3 cut(s) 336, 433, 471
HapII CCGG 1 cut(s) 411
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 321
Hin1II CATG 3 cut(s) 49, 208, 569
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HinfI GANTC 4 cut(s) 351, 407, 461, 662
HpaII CCGG 1 cut(s) 411
Hpy166II GTNNAC 2 cut(s) 57, 220
Hpy188I TCNGA 3 cut(s) 139, 389, 704
Hpy188III TCNNGA 2 cut(s) 161, 635
Hpy8I GTNNAC 2 cut(s) 57, 220
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 19, 203, 634
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 3 cut(s) 59, 252, 343
HpyCH4V TGCA 3 cut(s) 190, 225, 685
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 3 cut(s) 59, 252, 343
Hsp92II CATG 3 cut(s) 49, 208, 569
HspAI GCGC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 201, 442, 673
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 3 cut(s) 154, 166, 268
MaeI CTAG 2 cut(s) 282, 600
MaeII ACGT 3 cut(s) 59, 252, 343
MalI GATC 3 cut(s) 203, 444, 675
MboI GATC 3 cut(s) 201, 442, 673
MboII GAAGA 5 cut(s) 53, 89, 166, 587, 657
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 4 cut(s) 82, 290, 483, 512
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 2 cut(s) 345, 470
MnlI CCTC 5 cut(s) 16, 378, 528, 649, 652
Mox20I TGGCCA 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 290
MscI TGGCCA 1 cut(s) 471
MseI TTAA 5 cut(s) 65, 195, 401, 482, 576
MslI CAYNNNNRTG 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 2 cut(s) 88, 693
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 2 cut(s) 88, 693
NdeI CATATG 1 cut(s) 687
NdeII GATC 3 cut(s) 201, 442, 673
NlaIII CATG 3 cut(s) 49, 208, 569
NlaIV GGNNCC 2 cut(s) 113, 214
NspV TTCGAA 1 cut(s) 605
PciSI GCTCTTC 1 cut(s) 600
PctI GAATGC 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 407, 662
PflMI CCANNNNNTGG 1 cut(s) 429
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 2 cut(s) 345, 469
PpsI GAGTC 2 cut(s) 345, 469
Ppu21I YACGTR 1 cut(s) 253
PshAI GACNNNNGTC 1 cut(s) 355
PsiI TTATAA 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 86, 691
PspGI CCWGG 2 cut(s) 86, 691
PspN4I GGNNCC 2 cut(s) 113, 214
PvuII CAGCTG 1 cut(s) 671
RseI CAYNNNNRTG 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 5 cut(s) 65, 195, 401, 482, 576
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 3 cut(s) 201, 442, 673
SchI GAGTC 2 cut(s) 345, 470
ScrFI CCNGG 2 cut(s) 88, 693
SduI GDGCHC 1 cut(s) 114
SetI ASST 8 cut(s) 8, 62, 255, 310, 346, 595, 673, 697
SfaNI GCATC 3 cut(s) 154, 166, 268
SfuI TTCGAA 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 4 cut(s) 82, 290, 483, 512
SsiI CCGC 2 cut(s) 23, 360
SspMI CTAG 2 cut(s) 282, 600
StyD4I CCNGG 2 cut(s) 86, 691
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 3 cut(s) 62, 255, 346
TaqI TCGA 2 cut(s) 162, 605
TasI AATT 4 cut(s) 82, 290, 483, 512
TfiI GAWTC 2 cut(s) 407, 662
Tru1I TTAA 5 cut(s) 65, 195, 401, 482, 576
Tru9I TTAA 5 cut(s) 65, 195, 401, 482, 576
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 316
TspDTI ATGAA 5 cut(s) 123, 227, 283, 303, 441
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 429
XapI RAATTY 1 cut(s) 290
XmiI GTMKAC 2 cut(s) 56, 219
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 2 cut(s) 282, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.