FvH4_4g01490

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000449
Physical Location & Seq
Reverse (-)
1343097 .. 1343519
423 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01490.t1

Sequence Viewer

Length: 423 bp
ATGTATTCATCCGAGACGGCAGAGTGGAAGCGTCTCGATCTTCCTTTCTTCCCCAGCGATGATTGTAGGGAGAAGGCTATGCAGTTTGACGAGAGGAGCAGGGAGGGCGCCGTGTACTGCAATGGCGCGATTCATTGGATAAGAGATAGAATGCATGTTGGCTTGTGTTGGGGTAGGACAAGGATACGGGACGGTCTATGGTCTGAAGAAGACGCTTGGTTAAGAAATGATTGTGATCTGTTGCATTACTTTGATGTAGGTGAAGAACGATTGAGAGTTGCCCCTGCCACTCCTCCTCCTCTCCCCTTGTCTGTCAAAAACCTTGCCCTTCCCACTGATTGGCCGAAGTTCGAGTGTGTATGTTTTGGAGAGTGCGGCGGCCGTTTGTATTTAATTGAGACTTTGGAGCATTGCAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

141

Amino Acids

16.35

Weight (kDa)

5.22

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 339
AccII CGCG 1 cut(s) 128
AciI CCGC 2 cut(s) 375, 378
AcoI YGGCCR 2 cut(s) 341, 379
AcuI CTGAAG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 339
Alw26I GTCTC 3 cut(s) 8, 38, 392
AoxI GGCC 2 cut(s) 341, 379
AspLEI GCGC 2 cut(s) 110, 128
AsuHPI GGTGA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 216
BceAI ACGGC 3 cut(s) 33, 95, 366
BciVI GTATCC 1 cut(s) 177
BcoDI GTCTC 3 cut(s) 8, 38, 392
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 2 cut(s) 376, 379
BlsI GCNGC 2 cut(s) 377, 380
BmiI GGNNCC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse3DI GCAATG 2 cut(s) 127, 409
Bse8I GATNNNNATC 1 cut(s) 234
BseGI GGATG 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 2 cut(s) 127, 409
BseRI GAGGAG 4 cut(s) 109, 282, 285, 288
BseX3I CGGCCG 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 2 cut(s) 343, 381
BshNI GGYRCC 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 3 cut(s) 8, 38, 392
BsmBI CGTCTC 2 cut(s) 8, 38
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 2 cut(s) 343, 381
Bsp143I GATC 2 cut(s) 37, 235
BspACI CCGC 2 cut(s) 375, 378
BspANI GGCC 2 cut(s) 343, 381
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 2 cut(s) 127, 409
BssMI GATC 2 cut(s) 37, 235
BssNI GRCGYC 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 108
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 128
BstKTI GATC 2 cut(s) 40, 238
BstMAI GTCTC 3 cut(s) 8, 38, 392
BstMBI GATC 2 cut(s) 37, 235
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 158
BstUI CGCG 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 216
BstZI CGGCCG 1 cut(s) 379
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 2 cut(s) 343, 381
BtgZI GCGATG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 333
CfoI GCGC 2 cut(s) 110, 128
CseI GACGC 2 cut(s) 20, 221
Csp6I GTAC 1 cut(s) 115
CviAII CATG 1 cut(s) 155
CviJI RGCY 4 cut(s) 77, 162, 343, 381
CviKI_1 RGCY 4 cut(s) 77, 162, 343, 381
CviQI GTAC 1 cut(s) 115
DinI GGCGCC 1 cut(s) 109
DpnI GATC 2 cut(s) 39, 237
DpnII GATC 2 cut(s) 37, 235
EaeI YGGCCR 2 cut(s) 341, 379
EagI CGGCCG 1 cut(s) 379
EclXI CGGCCG 1 cut(s) 379
Eco52I CGGCCG 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 156
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
Esp3I CGTCTC 2 cut(s) 8, 38
FaeI CATG 1 cut(s) 158
FaiI YATR 4 cut(s) 80, 156, 199, 361
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 376, 379
Fsp4HI GCNGC 2 cut(s) 376, 379
GlaI GCGC 2 cut(s) 109, 127
GluI GCNGC 2 cut(s) 376, 379
GsaI CCCAGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 343, 381
HgaI GACGC 2 cut(s) 20, 221
HhaI GCGC 2 cut(s) 110, 128
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 2 cut(s) 108, 126
HinP1I GCGC 2 cut(s) 108, 126
HinfI GANTC 1 cut(s) 130
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 13, 205
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 67, 338
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 5 cut(s) 82, 120, 154, 244, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 2 cut(s) 108, 126
KasI GGCGCC 1 cut(s) 107
Kzo9I GATC 2 cut(s) 37, 235
LmnI GCTCC 2 cut(s) 96, 406
LpnPI CCDG 3 cut(s) 67, 85, 297
MalI GATC 2 cut(s) 39, 237
MboI GATC 2 cut(s) 37, 235
MboII GAAGA 5 cut(s) 32, 40, 218, 221, 275
MluCI AATT 1 cut(s) 393
Mly113I GGCGCC 1 cut(s) 108
MnlI CCTC 5 cut(s) 87, 97, 303, 306, 309
Mph1103I ATGCAT 1 cut(s) 156
MseI TTAA 2 cut(s) 221, 392
Mva1269I GAATGC 1 cut(s) 156
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 105
NarI GGCGCC 1 cut(s) 108
NdeII GATC 2 cut(s) 37, 235
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 156
NspI RCATGY 1 cut(s) 158
PctI GAATGC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 2 cut(s) 377, 380
PluTI GGCGCC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 109
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 221, 392
SatI GCNGC 2 cut(s) 376, 379
Sau3AI GATC 2 cut(s) 37, 235
SetI ASST 2 cut(s) 262, 324
SfoI GGCGCC 1 cut(s) 109
Sse9I AATT 1 cut(s) 393
SsiI CCGC 2 cut(s) 375, 378
SspDI GGCGCC 1 cut(s) 107
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 36, 351
TasI AATT 1 cut(s) 393
TatI WGTACW 1 cut(s) 114
TauI GCSGC 2 cut(s) 378, 381
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 2 cut(s) 221, 392
Tru9I TTAA 2 cut(s) 221, 392
TscAI CASTG 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 339
XceI RCATGY 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.