Rh4BG017500

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000449
Physical Location & Seq
Forward (+)
2757391 .. 2758185
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG017500.1

Sequence Viewer

Length: 300 bp
ATGGAGAGGGACTATTGTGGCTCGTTTATCAAGTACTTTGTTGATCTTAATTCAGTATTCGCAGCTCTTCCTGATTCAAATAATGCTTTTGCTGTCTTTTGCCTCTGTCGCCCAGAGGAAAAAGATAATGAGGTTGAAGATTCTTCAACTGATGATGTGTTGTTGCTTATGCCTGGTAAGGTCATATCTTACAATCTTAGGAACAATACCTTCATGACATCTGTTGAGTTTGCCAATAAGAAACTTTTTCTAGCTTTACATGATAATCCTTATTCCAGGGATGATGAAAATCATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

99

Amino Acids

11.36

Weight (kDa)

4.49

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 3 cut(s) 78, 137, 147
AjnI CCWGG 2 cut(s) 172, 275
AluBI AGCT 2 cut(s) 65, 254
AluI AGCT 2 cut(s) 65, 254
ApeKI GCWGC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 174, 277
BfaI CTAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 174, 277
BmrFI CCNGG 2 cut(s) 174, 277
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 2 cut(s) 174, 277
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 286, 292
BseJI GATNNNNATC 1 cut(s) 288
BseXI GCAGC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 43
BspHI TCATGA 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 174, 277
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 2 cut(s) 286, 292
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNI CCWGG 2 cut(s) 174, 277
BstSCI CCNGG 2 cut(s) 172, 275
BstV1I GCAGC 1 cut(s) 74
BtsCI GGATG 2 cut(s) 286, 292
CciI TCATGA 1 cut(s) 213
Csp6I GTAC 1 cut(s) 34
CviAII CATG 2 cut(s) 214, 260
CviJI RGCY 3 cut(s) 21, 65, 254
CviKI_1 RGCY 3 cut(s) 21, 65, 254
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 197
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 172, 275
FaeI CATG 2 cut(s) 217, 263
FaiI YATR 5 cut(s) 170, 185, 215, 261, 298
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 213, 259
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 279, 293
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 63
Hin1II CATG 2 cut(s) 217, 263
HinfI GANTC 2 cut(s) 74, 140
Hpy188III TCNNGA 2 cut(s) 71, 214
HpyAV CCTTC 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 2 cut(s) 217, 263
Kzo9I GATC 1 cut(s) 43
LguI GCTCTTC 1 cut(s) 72
LpnPI CCDG 6 cut(s) 84, 126, 159, 186, 262, 289
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 1 cut(s) 251
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 3 cut(s) 59, 135, 149
MluCI AATT 1 cut(s) 49
MnlI CCTC 3 cut(s) 109, 113, 124
MseI TTAA 1 cut(s) 48
MspR9I CCNGG 2 cut(s) 174, 277
MvaI CCWGG 2 cut(s) 174, 277
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeII GATC 1 cut(s) 43
NlaIII CATG 2 cut(s) 217, 263
PagI TCATGA 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 74, 140
PkrI GCNGC 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 172, 275
PspGI CCWGG 2 cut(s) 172, 275
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 1 cut(s) 43
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 174, 277
SetI ASST 5 cut(s) 67, 135, 183, 212, 256
Sse9I AATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 172, 275
TasI AATT 1 cut(s) 49
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 2 cut(s) 74, 140
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 202, 300
XspI CTAG 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.