Rh4BG014600

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000449
Physical Location & Seq
Reverse (-)
2123639 .. 2123962
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG014600.1

Sequence Viewer

Length: 324 bp
ATGCAGATGGAGAGGGGCTACTCTGGCTGGATACTTGATGTTGATCTTAATCCGGTAGTCGCAGCTGTTCCTGGACAGGATTGGAATGCTTTTGTTGTCTTGTGCCTTTCTCAAGAGGAGGAAACAGATAATGGGGTTGAGGATTCTTCCGCTGATCTTTTATTGCACATGCCTGGTAAGGTCATATCTTATAATATTTGGAATAAGAGCTTCAAGACATCTGTTGAGTTGGCCAATAATGAACTTTTTCTAGTTTTACGTGATAATCGTCGTATTCGAGAGGATGTTATTTTTCCTTACACGGAGACTCTAGCTTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

107

Amino Acids

12.18

Weight (kDa)

4.33

Isoelectric Point (pI)

56.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AciI CCGC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 231
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 2 cut(s) 70, 172
AluBI AGCT 3 cut(s) 65, 210, 314
AluI AGCT 3 cut(s) 65, 210, 314
Alw26I GTCTC 1 cut(s) 299
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 246
BalI TGGCCA 1 cut(s) 233
BbvI GCAGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 72, 174
BciVI GTATCC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 2 cut(s) 251, 311
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 72, 174
BmrFI CCNGG 2 cut(s) 72, 174
BpuEI CTTGAG 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 260
BsaBI GATNNNNATC 2 cut(s) 42, 48
BsaWI WCCGGW 1 cut(s) 52
Bse8I GATNNNNATC 2 cut(s) 42, 48
BseBI CCWGG 2 cut(s) 72, 174
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 2 cut(s) 42, 48
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 43, 154
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 233
BssMI GATC 2 cut(s) 43, 154
Bst2UI CCWGG 2 cut(s) 72, 174
BstBAI YACGTR 1 cut(s) 260
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 2 cut(s) 46, 157
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 43, 154
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 2 cut(s) 72, 174
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 70, 172
BstV1I GCAGC 1 cut(s) 74
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 289
CviAII CATG 1 cut(s) 169
CviJI RGCY 6 cut(s) 18, 27, 65, 210, 233, 314
CviKI_1 RGCY 6 cut(s) 18, 27, 65, 210, 233, 314
DpnI GATC 2 cut(s) 45, 156
DpnII GATC 2 cut(s) 43, 154
EaeI YGGCCR 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 70, 172
FaeI CATG 1 cut(s) 172
FaiI YATR 3 cut(s) 170, 185, 192
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 251, 311
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 53
Hin1II CATG 1 cut(s) 172
HinfI GANTC 2 cut(s) 143, 307
HpaII CCGG 1 cut(s) 53
Hpy188III TCNNGA 3 cut(s) 113, 214, 278
Hpy99I CGWCG 1 cut(s) 273
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 4, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 43, 154
LpnPI CCDG 8 cut(s) 9, 13, 57, 62, 66, 84, 159, 186
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 2 cut(s) 251, 311
MaeII ACGT 1 cut(s) 259
MalI GATC 2 cut(s) 45, 156
MboI GATC 2 cut(s) 43, 154
MboII GAAGA 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 233
MluNI TGGCCA 1 cut(s) 233
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 5 cut(s) 6, 109, 112, 133, 274
Mox20I TGGCCA 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 246
MscI TGGCCA 1 cut(s) 233
MseI TTAA 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 2 cut(s) 65, 152
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 72, 174
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 2 cut(s) 72, 174
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 2 cut(s) 43, 154
NlaIII CATG 1 cut(s) 172
NspI RCATGY 1 cut(s) 172
PcsI WCGNNNNNNNCGW 2 cut(s) 265, 274
PctI GAATGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Ppu21I YACGTR 1 cut(s) 260
PsiI TTATAA 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 70, 172
PspGI CCWGG 2 cut(s) 70, 172
PvuII CAGCTG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 43, 154
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 72, 174
SetI ASST 5 cut(s) 67, 183, 212, 262, 316
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SsiI CCGC 1 cut(s) 150
SspI AATATT 1 cut(s) 196
SspMI CTAG 2 cut(s) 251, 311
StyD4I CCNGG 2 cut(s) 70, 172
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 277
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 317
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 2 cut(s) 251, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.