Rroxscaffold_5G00334530

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000449
Physical Location & Seq
Reverse (-)
1796168 .. 1796835
668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334530.1

Sequence Viewer

Length: 609 bp
ATGCACTTTGACGTCCGGAGCAGGGAAGGTGCGGTATACTGCAATGGCAAGATTCATTGGATAAGAAGTATTACCAACGAGTATGGCTTTTTCTCATGCTTGTACTTCTACGATGGTGAACTCATAAGAGATGAAGGTGACGTGTTACACTACTTTGACGTAGATGAAGAACGTTTGCTACTCGCCAATGCTACTCCTCCTGTTCCCTTGGTTTTCAGGAACATATCCTATGGTTTCCCCTATAAGTCTCCCATTAAGGATTTACATCATAGATATTTTGGGGAGTCAAGTGGCTGTTTGTATTTGATTGAGATTTTTGAGCACTGTAAAACTCAATTTGAGTTCATGGAGATGGAGAGGGACTACTCTGCCTGGTTTGTCAAGTACAATGTCGATCTTAATCCGAAGGAAAAAGATGATGAGGTTGGGGCGTCTTCAACTGATCTTTGGTTGCATGTACCTGGTAAGGTCGTATCTTATAATCTTGAGTGTAAGACGTTCAAGACATCTGTTGAGTTAGCCAATAAGGAACTTTTTCTAGCTTTAGATGATAATCCTATTTGGGAGAGTGAGAATTGTCCGTACATGGAGACTTTAACTTGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

202

Amino Acids

23.73

Weight (kDa)

4.79

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AatII GACGTC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 15
AciI CCGC 1 cut(s) 32
AclI AACGTT 1 cut(s) 172
AcyI GRCGYC 2 cut(s) 12, 431
AfaI GTAC 4 cut(s) 104, 386, 459, 584
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 2 cut(s) 438, 502
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 2 cut(s) 371, 460
AluBI AGCT 1 cut(s) 542
AluI AGCT 1 cut(s) 542
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 252, 584
Aor13HI TCCGGA 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 534
AsuHPI GGTGA 2 cut(s) 128, 149
BbsI GAAGAC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 324
BccI CCATC 2 cut(s) 107, 346
BciT130I CCWGG 2 cut(s) 373, 462
BcoDI GTCTC 2 cut(s) 252, 584
BfaI CTAG 1 cut(s) 539
Bme1390I CCNGG 2 cut(s) 373, 462
BmgBI CACGTC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 373, 462
BpiI GAAGAC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 506
BsaBI GATNNNNATC 3 cut(s) 264, 399, 552
BsaHI GRCGYC 2 cut(s) 12, 431
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 49
Bse8I GATNNNNATC 3 cut(s) 264, 399, 552
BseAI TCCGGA 1 cut(s) 15
BseBI CCWGG 2 cut(s) 373, 462
BseDI CCNNGG 1 cut(s) 207
BseJI GATNNNNATC 3 cut(s) 264, 399, 552
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 252, 584
BsmFI GGGAC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 15
Bsp143I GATC 2 cut(s) 394, 442
BspACI CCGC 1 cut(s) 32
BspEI TCCGGA 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 394, 442
BssNAI GTATAC 1 cut(s) 37
BssNI GRCGYC 2 cut(s) 12, 431
BssT1I CCWWGG 1 cut(s) 207
Bst1107I GTATAC 1 cut(s) 37
Bst2UI CCWGG 2 cut(s) 373, 462
Bst4CI ACNGT 1 cut(s) 326
BstACI GRCGYC 2 cut(s) 12, 431
BstKTI GATC 2 cut(s) 397, 445
BstMAI GTCTC 2 cut(s) 252, 584
BstMBI GATC 2 cut(s) 394, 442
BstNI CCWGG 2 cut(s) 373, 462
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 371, 460
BstV2I GAAGAC 1 cut(s) 426
BstZ17I GTATAC 1 cut(s) 37
BtrI CACGTC 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 322
CseI GACGC 1 cut(s) 420
CsiI ACCWGGT 1 cut(s) 460
Csp6I GTAC 4 cut(s) 103, 385, 458, 583
CviAII CATG 4 cut(s) 96, 346, 455, 586
CviJI RGCY 4 cut(s) 87, 294, 521, 542
CviKI_1 RGCY 4 cut(s) 87, 294, 521, 542
CviQI GTAC 4 cut(s) 103, 385, 458, 583
DpnI GATC 2 cut(s) 396, 444
DpnII GATC 2 cut(s) 394, 442
Eco130I CCWWGG 1 cut(s) 207
EcoRII CCWGG 2 cut(s) 371, 460
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 4 cut(s) 99, 349, 458, 589
FaqI GGGAC 1 cut(s) 374
FatI CATG 4 cut(s) 95, 345, 454, 585
FblI GTMKAC 1 cut(s) 36
FspBI CTAG 1 cut(s) 539
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 420
Hin1I GRCGYC 2 cut(s) 12, 431
Hin1II CATG 4 cut(s) 99, 349, 458, 589
HinfI GANTC 2 cut(s) 52, 284
HpaII CCGG 1 cut(s) 16
HphI GGTGA 2 cut(s) 128, 149
Hpy166II GTNNAC 2 cut(s) 37, 119
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 4 cut(s) 16, 217, 485, 502
Hpy8I GTNNAC 2 cut(s) 37, 119
HpyAV CCTTC 3 cut(s) 20, 128, 400
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 5 cut(s) 12, 141, 159, 172, 497
HpyCH4V TGCA 3 cut(s) 4, 42, 454
HpySE526I ACGT 5 cut(s) 12, 141, 159, 172, 497
Hsp92I GRCGYC 2 cut(s) 12, 431
Hsp92II CATG 4 cut(s) 99, 349, 458, 589
Kpn2I TCCGGA 1 cut(s) 15
Kzo9I GATC 2 cut(s) 394, 442
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 8 cut(s) 7, 29, 202, 213, 358, 385, 447, 474
MabI ACCWGGT 1 cut(s) 460
MaeI CTAG 1 cut(s) 539
MaeII ACGT 5 cut(s) 12, 141, 159, 172, 497
MaeIII GTNAC 2 cut(s) 137, 144
MalI GATC 2 cut(s) 396, 444
MboI GATC 2 cut(s) 394, 442
MboII GAAGA 2 cut(s) 179, 426
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 335, 574
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 3 cut(s) 207, 351, 415
MroI TCCGGA 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 3 cut(s) 255, 399, 596
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 2 cut(s) 373, 462
MvaI CCWGG 2 cut(s) 373, 462
NdeII GATC 2 cut(s) 394, 442
NlaIII CATG 4 cut(s) 99, 349, 458, 589
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 1 cut(s) 52
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PsiI TTATAA 1 cut(s) 480
Psp1406I AACGTT 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 371, 460
PspGI CCWGG 2 cut(s) 371, 460
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
RsaI GTAC 4 cut(s) 104, 386, 459, 584
RsaNI GTAC 4 cut(s) 103, 385, 458, 583
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 3 cut(s) 255, 399, 596
Sau3AI GATC 2 cut(s) 394, 442
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 373, 462
SduI GDGCHC 1 cut(s) 324
SexAI ACCWGGT 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 2 cut(s) 335, 574
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 2 cut(s) 371, 460
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 5 cut(s) 15, 144, 162, 175, 500
TaqI TCGA 1 cut(s) 393
TasI AATT 2 cut(s) 335, 574
TatI WGTACW 2 cut(s) 102, 384
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 3 cut(s) 255, 399, 596
Tru9I TTAA 3 cut(s) 255, 399, 596
TscAI CASTG 1 cut(s) 329
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 44, 147, 180, 334
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 1 cut(s) 329
XceI RCATGY 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 1 cut(s) 539
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.