Rroxscaffold_5G00335080

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000449
Physical Location & Seq
Forward (+)
2567364 .. 2570755
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335080.1

Sequence Viewer

Length: 855 bp
ATGGGGGATAGTGCGAAACCGAAACGAACAAGCCAAAGCAAACTAACAAACACACCTCATCGGGATAGGCTCACTCAAACAGTCAAACCCAATGAAGCATTTGGACATTTTTATACACACATAATGACTAGAGCCCTTACTCTAGGCAACATATTGTTGGACAATTCTATTTGTTACTTTGAGTTGAAAGAAAGCTTGGAGTGCCACCTCAATCTGTTAGCCGTTTCAAGTGCGTCTCCAAGCATTGGCTTTTCTTATCTCCAACATCCAGAACCCCAAGATCTCTGCAACACTGAAGAAGAGTCCTTCAAGTCCATCCCTCTTGATCCTTGGCTCTCTCTCATCTCCGACCTCCGCACCCTCAAAAACCCCAAGATATCGGCTTTCTTCACTAGCAAAATCGAAGATGAGTGCTTCAAGTCCATCCCTCTTGGTAACCATGAAATCCCACCTGGGTGGAATCCCTTCAAAACCCTTAACAATTCCGTCCCTGATGGATCCAAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCTTTCTCTGCCATATTCCTATATTTGGAGAACAAAGGAAACATCATCCCGTATATGTTGTTAATCTAACAACCAACCAATTCCGGGCTGTTTCCTCTCCAAGGGTTGGGGAAGATATGGACAGATTAGCTTTTGTACGGTATGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGATCTGTGTGACTAACTCGGTGCCCACCATTTATCATTATGTGGAACGGGAAGGCGAGCACCACAAAATAGACATATATTCGTCTGAGACTGAAAAACTGGAAGCATCTAAATATTCCTTTCTTCCAAAGCCCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

284

Amino Acids

32.28

Weight (kDa)

7.2

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 736
AccB7I CCANNNNNTGG 2 cut(s) 245, 638
AciI CCGC 1 cut(s) 355
AclWI GGATC 3 cut(s) 320, 492, 505
AcuI CTGAAG 2 cut(s) 315, 500
AfaI GTAC 1 cut(s) 669
AfiI CCNNNNNNNGG 6 cut(s) 245, 507, 557, 616, 633, 638
AgsI TTSAA 5 cut(s) 187, 228, 310, 418, 469
AjnI CCWGG 1 cut(s) 451
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AleI CACNNNNGTG 1 cut(s) 454
AluBI AGCT 2 cut(s) 195, 662
AluI AGCT 2 cut(s) 195, 662
Alw21I GWGCWC 1 cut(s) 777
Alw26I GTCTC 2 cut(s) 240, 797
AlwI GGATC 3 cut(s) 320, 492, 505
AoxI GGCC 1 cut(s) 529
Asp700I GAANNNNTTC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 2 cut(s) 693, 727
BaeGI GKGCMC 1 cut(s) 741
BamHI GGATCC 1 cut(s) 497
BanI GGYRCC 1 cut(s) 736
BanII GRGCYC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 777
BccI CCATC 3 cut(s) 323, 431, 488
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 453
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 2 cut(s) 240, 797
BfaI CTAG 3 cut(s) 129, 143, 393
BglII AGATCT 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 453, 617
BmiI GGNNCC 2 cut(s) 499, 738
BmrFI CCNGG 2 cut(s) 453, 617
BmsI GCATC 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 617
BsaJI CCNNGG 3 cut(s) 329, 452, 632
Bsc4I CCNNNNNNNGG 6 cut(s) 245, 507, 557, 616, 633, 638
Bse1I ACTGG 1 cut(s) 819
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 3 cut(s) 329, 452, 632
BseGI GGATG 4 cut(s) 265, 315, 423, 577
BseLI CCNNNNNNNGG 6 cut(s) 245, 507, 557, 616, 633, 638
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 1 cut(s) 792
BseNI ACTGG 1 cut(s) 819
BseSI GKGCMC 1 cut(s) 741
BshFI GGCC 1 cut(s) 531
BshNI GGYRCC 1 cut(s) 736
BsiHKAI GWGCWC 1 cut(s) 777
BsiSI CCGG 1 cut(s) 616
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 6 cut(s) 245, 507, 557, 616, 633, 638
BsmAI GTCTC 2 cut(s) 240, 797
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 1 cut(s) 531
Bsp1286I GDGCHC 3 cut(s) 136, 741, 777
Bsp143I GATC 4 cut(s) 280, 325, 497, 717
BspACI CCGC 1 cut(s) 355
BspANI GGCC 1 cut(s) 531
BspCNI CTCAG 1 cut(s) 793
BspLI GGNNCC 2 cut(s) 499, 738
BspPI GGATC 3 cut(s) 320, 492, 505
BspT107I GGYRCC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 532
BsrI ACTGG 1 cut(s) 819
BssECI CCNNGG 3 cut(s) 329, 452, 632
BssMI GATC 4 cut(s) 280, 325, 497, 717
BssT1I CCWWGG 2 cut(s) 329, 632
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 82, 672
Bst6I CTCTTC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 773
BstDEI CTNAG 1 cut(s) 801
BstEII GGTNACC 1 cut(s) 434
BstENI CCTNNNNNAGG 1 cut(s) 631
BstF5I GGATG 4 cut(s) 265, 315, 423, 577
BstKTI GATC 4 cut(s) 283, 328, 500, 720
BstMAI GTCTC 2 cut(s) 240, 797
BstMBI GATC 4 cut(s) 280, 325, 497, 717
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 453
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 451, 615
BstSLI GKGCMC 1 cut(s) 741
BstX2I RGATCY 2 cut(s) 280, 497
BstXI CCANNNNNNTGG 1 cut(s) 456
BstYI RGATCY 2 cut(s) 280, 497
BsuRI GGCC 1 cut(s) 531
BtsCI GGATG 4 cut(s) 265, 315, 423, 577
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 773
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 668
CviAII CATG 1 cut(s) 440
CviQI GTAC 1 cut(s) 668
DdeI CTNAG 1 cut(s) 801
DpnI GATC 4 cut(s) 282, 327, 499, 719
DpnII GATC 4 cut(s) 280, 325, 497, 717
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco130I CCWWGG 2 cut(s) 329, 632
Eco24I GRGCYC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 378
Eco57I CTGAAG 2 cut(s) 315, 500
Eco91I GGTNACC 1 cut(s) 434
EcoNI CCTNNNNNAGG 1 cut(s) 631
EcoO65I GGTNACC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 451
EcoRV GATATC 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 329, 632
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 329, 632
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 1 cut(s) 443
FaqI GGGAC 1 cut(s) 473
FatI CATG 1 cut(s) 439
FokI GGATG 4 cut(s) 252, 302, 410, 564
FriOI GRGCYC 1 cut(s) 136
FspBI CTAG 3 cut(s) 129, 143, 393
HaeIII GGCC 1 cut(s) 531
HapII CCGG 1 cut(s) 616
HgaI GACGC 1 cut(s) 222
Hin1II CATG 1 cut(s) 443
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 3 cut(s) 302, 460, 511
HpaII CCGG 1 cut(s) 616
HphI GGTGA 2 cut(s) 693, 727
Hpy188I TCNGA 3 cut(s) 349, 802, 854
Hpy188III TCNNGA 3 cut(s) 62, 269, 323
HpyAV CCTTC 4 cut(s) 316, 475, 702, 761
HpyCH4III ACNGT 2 cut(s) 82, 672
HpyCH4V TGCA 2 cut(s) 288, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 801
Hsp92II CATG 1 cut(s) 443
Kzo9I GATC 4 cut(s) 280, 325, 497, 717
LpnPI CCDG 7 cut(s) 282, 438, 465, 504, 535, 629, 800
LweI GCATC 1 cut(s) 830
MaeI CTAG 3 cut(s) 129, 143, 393
MaeIII GTNAC 3 cut(s) 173, 434, 724
MalI GATC 4 cut(s) 282, 327, 499, 719
MboI GATC 4 cut(s) 280, 325, 497, 717
MboII GAAGA 7 cut(s) 308, 311, 379, 416, 506, 656, 830
MflI RGATCY 2 cut(s) 280, 497
MhlI GDGCHC 3 cut(s) 136, 741, 777
MluCI AATT 3 cut(s) 163, 481, 611
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 138, 286, 372
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 2 cut(s) 477, 594
MslI CAYNNNNRTG 1 cut(s) 454
MspI CCGG 1 cut(s) 616
MspR9I CCNGG 2 cut(s) 453, 617
MvaI CCWGG 1 cut(s) 453
MwoI GCNNNNNNNGC 1 cut(s) 201
NciI CCSGG 1 cut(s) 617
NdeII GATC 4 cut(s) 280, 325, 497, 717
NlaIII CATG 1 cut(s) 443
NlaIV GGNNCC 2 cut(s) 499, 738
NmuCI GTSAC 1 cut(s) 724
OliI CACNNNNGTG 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 460, 511
PflMI CCANNNNNTGG 2 cut(s) 245, 638
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 451
PspEI GGTNACC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 499, 738
PsuI RGATCY 2 cut(s) 280, 497
RsaI GTAC 1 cut(s) 669
RsaNI GTAC 1 cut(s) 668
RseI CAYNNNNRTG 1 cut(s) 454
SaqAI TTAA 2 cut(s) 477, 594
Sau3AI GATC 4 cut(s) 280, 325, 497, 717
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 453, 617
SduI GDGCHC 3 cut(s) 136, 741, 777
SetI ASST 8 cut(s) 58, 197, 210, 354, 454, 664, 706, 717
SfaNI GCATC 1 cut(s) 830
SmiMI CAYNNNNRTG 1 cut(s) 454
Sse9I AATT 3 cut(s) 163, 481, 611
SsiI CCGC 1 cut(s) 355
SspI AATATT 1 cut(s) 830
SspMI CTAG 3 cut(s) 129, 143, 393
StyD4I CCNGG 2 cut(s) 451, 615
StyI CCWWGG 2 cut(s) 329, 632
TaaI ACNGT 2 cut(s) 82, 672
TaqI TCGA 1 cut(s) 402
TasI AATT 3 cut(s) 163, 481, 611
TfiI GAWTC 2 cut(s) 460, 511
Tru1I TTAA 2 cut(s) 477, 594
Tru9I TTAA 2 cut(s) 477, 594
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 724
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 2 cut(s) 108, 456
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 1 cut(s) 298
Van91I CCANNNNNTGG 2 cut(s) 245, 638
XagI CCTNNNNNAGG 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 3 cut(s) 129, 143, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.