Rorug03G0314600

F-box protein At5g07610-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
33832365 .. 33832733
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0314600.1

Sequence Viewer

Length: 369 bp
ATGTCCGAACTGGAGAAATGCTTGAAGAAAGTGAATGATGATATTCTTCCAGAGGTCAATGAATGCTTGAAGAAAGTGAATGATGATATTCTTCCTAAGGTCAATGATCAAATTCTCCCCAAGATTAACGAGTGTCTTGACAAGGCTTCAAGTCTCTTATCTGTGATGAAGACTGGAGCAGTCTTGGGTGGGGGAGTTGCCGTTTTTTGGGCTGTTTTTGTGATTTGGAAGATTTGCTTTCCACCTCCACCCCCTCCACCACCAAGAGATTTGCTGGTCTTGCTCTATCTACCACCACCACCACCACCACCACCATCAGCAGCAGCAGCAACTCCCCAAGTTGGTTTAGGATATGTCACTGGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.09

Weight (kDa)

5.29

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 207, 341
AgsI TTSAA 3 cut(s) 25, 70, 150
Alw26I GTCTC 1 cut(s) 158
ApeKI GCWGC 3 cut(s) 320, 323, 326
ApoI RAATTY 1 cut(s) 111
AxyI CCTNAGG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 332, 335, 338
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 185
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 158
BisI GCNGC 3 cut(s) 321, 324, 327
BlsI GCNGC 3 cut(s) 322, 325, 328
BmrI ACTGGG 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 2 cut(s) 32, 195
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 341
Bse1I ACTGG 3 cut(s) 15, 178, 364
Bse21I CCTNAGG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 207, 341
BseNI ACTGG 3 cut(s) 15, 178, 364
BseXI GCAGC 3 cut(s) 332, 335, 338
BslI CCNNNNNNNGG 2 cut(s) 207, 341
BsmAI GTCTC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 106
BsrI ACTGG 3 cut(s) 15, 178, 364
BssMI GATC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 280, 326
BstV1I GCAGC 3 cut(s) 332, 335, 338
BstV2I GAAGAC 1 cut(s) 176
Bsu36I CCTNAGG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 357
CviJI RGCY 2 cut(s) 146, 212
CviKI_1 RGCY 2 cut(s) 146, 212
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco81I CCTNAGG 1 cut(s) 96
FaiI YATR 2 cut(s) 354, 367
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 321, 324, 327
Fsp4HI GCNGC 3 cut(s) 321, 324, 327
GluI GCNGC 3 cut(s) 321, 324, 327
GsuI CTGGAG 2 cut(s) 32, 195
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 50, 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 326
HpyF3I CTNAG 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 4 cut(s) 63, 159, 260, 345
Lsp1109I GCAGC 3 cut(s) 332, 335, 338
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 6 cut(s) 37, 38, 82, 83, 181, 241
MluCI AATT 1 cut(s) 111
MnlI CCTC 3 cut(s) 46, 255, 264
MseI TTAA 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 280, 326
NdeII GATC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 355
PctI GAATGC 1 cut(s) 68
PkrI GCNGC 3 cut(s) 322, 325, 328
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 3 cut(s) 321, 324, 327
Sau3AI GATC 1 cut(s) 106
SetI ASST 3 cut(s) 57, 102, 247
Sse9I AATT 1 cut(s) 111
TasI AATT 1 cut(s) 111
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 3 cut(s) 320, 323, 326
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 75, 182
TspRI CASTG 1 cut(s) 364
XapI RAATTY 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.