Rh4AG023900

F-box protein At5g07610-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
4689614 .. 4696429
6816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG023900.1

Sequence Viewer

Length: 1269 bp
ATGTCATCGGCAGAAACGGTAGCAAATATCGAAGAACTCCTGACAAATATCCTTGTGTCGGTGCCACCTCATTCTGTTGCCCGTTTCAAGTGCGCCTCCAAACATTGGCCCTCTCTTATCTCCAACATCCAAAATCCCAAGATTTCTGCTTTCTTCTCCAGCAAGACCAAAGAAGAGTCCTTCAAGTTCATTCCACTTCGTAAGCACGAAAGCCCATCTGTGAATCCCTTTAAAAGCCTTAATAATTCCGTCCCTGATGGATCTAAGTTGAAGATTATTCAGTCCTGCAATGGCCTCTTTCTCTGCCTTTGCAAGTCGACGAAAGAAAGAAGGCATGATCTCGTATACGTTTTCAATCCCACAACCAACCAATTCCGGGCTGTTTCTTCTCCAAGGTTTGGGGAAGACATGGGCGAATTTGCTTTTGTACGTTACGAATTTGGTTTTGTACGTTATGCTTTGGCTTTTGATCCTTCCAAATCGCCTCATTACAAGGTGGTCTGCGTGACTAACTTCAATGATCATTATGATGGGGGGCACCACGAGATAGACATATATTCATCAGAGACTGGAAAGTGGAAGCATCTCGATACTCCTTTCTTCCCCAGCCCCTCTGACGAGGGCGCAAACTATGATTGCAAGGAGATGGCCATGCACTTTGACTACAGGAGCAGGAAAGGCACCGTATACTGCAATGGCGCAGTTCATTGGATAAGAGGCAGTCGTGAAGCAAGATTGCCATTCTGCACATTTGGGGATGGTAGGAATGAGTTCATAAGAAACGAAAGTGATGTGCTGCACTACTTTGACGTAGGCGAAGAACGTTTGCTGCTAGCCTCCGCTACCCCTCCTGTCCCCTTGGTTGTCAAAAAAATTCCATTAATTTCCTCCCCTAGCCCTCATTATTCCTTTAAGTCTCCCTCTGAGTATCCCAGATTGGCTCGTAGATATTTTGGGGAGTGCTGTGGCCGTTTGTACTTGATTGAGACTTACCAGCATTGTAGCACTGAATTTGAGGTCATGGAGATGGAGAAAGACTACTCTGGCTGGTTTGTCAATTTGGGTAGACAGATCAGGACCCCAGAGTCAGCGGCAAGGAGGTTATCTTTCTCTCCGACTTGCGCCGACTATGAAGGCTTGCTTGGTGTTGCAACAAACGTTGGAGCGGCGTGTAGCAGATCGAGGAGGTTGTGTGCAACTGTAGGGCATCGACGGGTCGAGGAGTATCAGGTTCTCTATCAGATTCACCTGGGCTTGGTGGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

422

Amino Acids

48.07

Weight (kDa)

8.44

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 57 - 207 4.1e-07 F-box associated beta propeller domain
FBA_1 PF07734 63 - 242 2.6e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1084
AccB1I GGYRCC 3 cut(s) 61, 537, 680
AccB7I CCANNNNNTGG 2 cut(s) 105, 398
AccBSI CCGCTC 1 cut(s) 1166
AccI GTMKAC 4 cut(s) 317, 345, 687, 1066
AciI CCGC 3 cut(s) 840, 1091, 1166
AclI AACGTT 2 cut(s) 823, 1158
AclWI GGATC 2 cut(s) 268, 464
AcoI YGGCCR 2 cut(s) 648, 967
AcsI RAATTY 4 cut(s) 416, 437, 873, 1010
AfaI GTAC 3 cut(s) 429, 450, 977
AfiI CCNNNNNNNGG 5 cut(s) 58, 105, 376, 398, 1255
AgsI TTSAA 5 cut(s) 88, 184, 271, 355, 517
AjnI CCWGG 1 cut(s) 1248
AjuI GAANNNNNNNTTGG 2 cut(s) 1125, 1157
Alw26I GTCTC 3 cut(s) 560, 921, 980
AlwI GGATC 2 cut(s) 268, 464
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 4 cut(s) 107, 292, 648, 967
ApeKI GCWGC 2 cut(s) 796, 829
ApoI RAATTY 4 cut(s) 416, 437, 873, 1010
AseI ATTAAT 1 cut(s) 881
Asp700I GAANNNNTTC 1 cut(s) 770
AspLEI GCGC 4 cut(s) 95, 626, 701, 1124
AspS9I GGNCC 2 cut(s) 108, 1077
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 1238
AsuNHI GCTAGC 1 cut(s) 832
AvaII GGWCC 1 cut(s) 1077
BaeGI GKGCMC 1 cut(s) 540
BalI TGGCCA 1 cut(s) 650
BanI GGYRCC 3 cut(s) 61, 537, 680
BauI CACGAG 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 783, 816
BccI CCATC 6 cut(s) 223, 251, 524, 640, 752, 1021
BceAI ACGGC 1 cut(s) 954
BciT130I CCWGG 1 cut(s) 1250
BciVI GTATCC 1 cut(s) 939
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 3 cut(s) 560, 921, 980
BfaI CTAG 2 cut(s) 833, 894
BfmI CTRYAG 2 cut(s) 664, 1200
BfuI GTATCC 1 cut(s) 939
BisI GCNGC 4 cut(s) 797, 830, 1092, 1167
BlsI GCNGC 4 cut(s) 798, 831, 1093, 1168
Bme1390I CCNGG 2 cut(s) 377, 1250
Bme18I GGWCC 1 cut(s) 1077
BmgT120I GGNCC 2 cut(s) 108, 1077
BmiI GGNNCC 4 cut(s) 63, 539, 682, 1079
BmrFI CCNGG 2 cut(s) 377, 1250
BmsI GCATC 2 cut(s) 592, 1216
BmtI GCTAGC 1 cut(s) 836
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 377
BsaJI CCNNGG 3 cut(s) 392, 858, 1249
BsaXI ACNNNNNCTCC 2 cut(s) 1177, 1207
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 105, 376, 398, 1255
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 2 cut(s) 295, 700
BseBI CCWGG 1 cut(s) 1250
BseDI CCNNGG 3 cut(s) 392, 858, 1249
BseGI GGATG 2 cut(s) 126, 763
BseLI CCNNNNNNNGG 5 cut(s) 58, 105, 376, 398, 1255
BseMI GCAATG 2 cut(s) 295, 700
BseMII CTCAG 1 cut(s) 915
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 2 cut(s) 1198, 1235
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 2 cut(s) 783, 816
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 2 cut(s) 730, 782
BshFI GGCC 4 cut(s) 109, 294, 650, 969
BshNI GGYRCC 3 cut(s) 61, 537, 680
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 2 cut(s) 236, 839
BslI CCNNNNNNNGG 5 cut(s) 58, 105, 376, 398, 1255
BsmAI GTCTC 3 cut(s) 560, 921, 980
BsmFI GGGAC 2 cut(s) 236, 839
BsnI GGCC 4 cut(s) 109, 294, 650, 969
Bsp1286I GDGCHC 1 cut(s) 540
Bsp143I GATC 6 cut(s) 260, 337, 469, 520, 1071, 1178
BspACI CCGC 3 cut(s) 840, 1091, 1166
BspANI GGCC 4 cut(s) 109, 294, 650, 969
BspCNI CTCAG 1 cut(s) 916
BspLI GGNNCC 4 cut(s) 63, 539, 682, 1079
BspOI GCTAGC 1 cut(s) 836
BspPI GGATC 2 cut(s) 268, 464
BspT107I GGYRCC 3 cut(s) 61, 537, 680
BsrBI CCGCTC 1 cut(s) 1166
BsrDI GCAATG 2 cut(s) 295, 700
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 3 cut(s) 392, 858, 1249
BssMI GATC 6 cut(s) 260, 337, 469, 520, 1071, 1178
BssNAI GTATAC 2 cut(s) 346, 688
BssSI CACGAG 1 cut(s) 542
BssT1I CCWWGG 2 cut(s) 392, 858
Bst1107I GTATAC 2 cut(s) 346, 688
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 1250
Bst4CI ACNGT 3 cut(s) 19, 685, 1201
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 834, 1139
BstDEI CTNAG 2 cut(s) 264, 924
BstF5I GGATG 2 cut(s) 126, 763
BstHHI GCGC 4 cut(s) 95, 626, 701, 1124
BstKTI GATC 6 cut(s) 263, 340, 472, 523, 1074, 1181
BstMAI GTCTC 3 cut(s) 560, 921, 980
BstMBI GATC 6 cut(s) 260, 337, 469, 520, 1071, 1178
BstMWI GCNNNNNNNGC 1 cut(s) 678
BstNI CCWGG 1 cut(s) 1250
BstSCI CCNGG 2 cut(s) 375, 1248
BstSFI CTRYAG 2 cut(s) 664, 1200
BstSLI GKGCMC 1 cut(s) 540
BstV1I GCAGC 2 cut(s) 783, 816
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BstZ17I GTATAC 2 cut(s) 346, 688
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 4 cut(s) 109, 294, 650, 969
BtsCI GGATG 2 cut(s) 126, 763
BtsIMutI CAGTG 1 cut(s) 1005
Cac8I GCNNGC 2 cut(s) 834, 1139
CaiI CAGNNNCTG 1 cut(s) 569
CfoI GCGC 4 cut(s) 95, 626, 701, 1124
Cfr13I GGNCC 2 cut(s) 108, 1077
Csp6I GTAC 3 cut(s) 428, 449, 976
CviAII CATG 4 cut(s) 335, 409, 652, 1021
CviQI GTAC 3 cut(s) 428, 449, 976
DdeI CTNAG 2 cut(s) 264, 924
DpnI GATC 6 cut(s) 262, 339, 471, 522, 1073, 1180
DpnII GATC 6 cut(s) 260, 337, 469, 520, 1071, 1178
DraI TTTAAA 1 cut(s) 232
DrdI GACNNNNNNGTC 1 cut(s) 1084
DseDI GACNNNNNNGTC 1 cut(s) 1084
EaeI YGGCCR 2 cut(s) 648, 967
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 2 cut(s) 392, 858
Eco47I GGWCC 1 cut(s) 1077
EcoO109I RGGNCCY 1 cut(s) 1077
EcoRII CCWGG 1 cut(s) 1248
EcoT14I CCWWGG 2 cut(s) 392, 858
ErhI CCWWGG 2 cut(s) 392, 858
FaeI CATG 4 cut(s) 338, 412, 655, 1024
FalI AAGNNNNNCTT 2 cut(s) 1125, 1157
FaqI GGGAC 2 cut(s) 236, 839
FatI CATG 4 cut(s) 334, 408, 651, 1020
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 4 cut(s) 317, 345, 687, 1066
Fnu4HI GCNGC 4 cut(s) 797, 830, 1092, 1167
FokI GGATG 2 cut(s) 113, 770
Fsp4HI GCNGC 4 cut(s) 797, 830, 1092, 1167
FspBI CTAG 2 cut(s) 833, 894
GlaI GCGC 4 cut(s) 94, 625, 700, 1123
GluI GCNGC 4 cut(s) 797, 830, 1092, 1167
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 4 cut(s) 109, 294, 650, 969
HapII CCGG 1 cut(s) 376
HhaI GCGC 4 cut(s) 95, 626, 701, 1124
Hin1II CATG 4 cut(s) 338, 412, 655, 1024
Hin6I GCGC 4 cut(s) 93, 624, 699, 1122
HinP1I GCGC 4 cut(s) 93, 624, 699, 1122
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 4 cut(s) 176, 223, 1085, 1243
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 1238
Hpy166II GTNNAC 4 cut(s) 318, 346, 688, 1067
Hpy188I TCNGA 5 cut(s) 565, 616, 925, 1116, 1242
Hpy188III TCNNGA 4 cut(s) 40, 587, 725, 1075
Hpy8I GTNNAC 4 cut(s) 318, 346, 688, 1067
Hpy99I CGWCG 2 cut(s) 322, 1215
HpyAV CCTTC 4 cut(s) 190, 324, 483, 1127
HpyCH4III ACNGT 3 cut(s) 19, 685, 1201
HpyCH4IV ACGT 6 cut(s) 348, 430, 451, 810, 823, 1158
HpyCH4V TGCA 9 cut(s) 288, 312, 639, 655, 693, 747, 799, 1151, 1196
HpyF10VI GCNNNNNNNGC 1 cut(s) 678
HpyF3I CTNAG 2 cut(s) 264, 924
HpySE526I ACGT 6 cut(s) 348, 430, 451, 810, 823, 1158
Hsp92II CATG 4 cut(s) 338, 412, 655, 1024
HspAI GCGC 4 cut(s) 93, 624, 699, 1122
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 6 cut(s) 260, 337, 469, 520, 1071, 1178
LmnI GCTCC 2 cut(s) 669, 1163
Lsp1109I GCAGC 2 cut(s) 783, 816
LweI GCATC 2 cut(s) 592, 1216
MaeI CTAG 2 cut(s) 833, 894
MaeII ACGT 6 cut(s) 348, 430, 451, 810, 823, 1158
MaeIII GTNAC 2 cut(s) 431, 505
MalI GATC 6 cut(s) 262, 339, 471, 522, 1073, 1180
MbiI CCGCTC 1 cut(s) 1166
MboI GATC 6 cut(s) 260, 337, 469, 520, 1071, 1178
MboII GAAGA 8 cut(s) 44, 145, 185, 283, 378, 416, 592, 830
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 540
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 8 cut(s) 244, 371, 416, 437, 873, 882, 1010, 1057
MluNI TGGCCA 1 cut(s) 650
MlyI GAGTC 2 cut(s) 185, 1094
MmeI TCCRAC 3 cut(s) 147, 1139, 1141
Mox20I TGGCCA 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 770
MscI TGGCCA 1 cut(s) 650
MseI TTAA 4 cut(s) 231, 240, 881, 912
MslI CAYNNNNRTG 2 cut(s) 528, 1025
Msp20I TGGCCA 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 1091
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 2 cut(s) 377, 1250
MvaI CCWGG 1 cut(s) 1250
MwoI GCNNNNNNNGC 1 cut(s) 678
NciI CCSGG 1 cut(s) 377
NdeII GATC 6 cut(s) 260, 337, 469, 520, 1071, 1178
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 4 cut(s) 338, 412, 655, 1024
NlaIV GGNNCC 4 cut(s) 63, 539, 682, 1079
NmuCI GTSAC 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 770
PfeI GAWTC 2 cut(s) 223, 1243
PflMI CCANNNNNTGG 2 cut(s) 105, 398
PkrI GCNGC 4 cut(s) 798, 831, 1093, 1168
PleI GAGTC 2 cut(s) 184, 1093
PpsI GAGTC 2 cut(s) 184, 1093
PpuMI RGGWCCY 1 cut(s) 1077
PshBI ATTAAT 1 cut(s) 881
Psp1406I AACGTT 2 cut(s) 823, 1158
Psp5II RGGWCCY 1 cut(s) 1077
Psp6I CCWGG 1 cut(s) 1248
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 1 cut(s) 1248
PspN4I GGNNCC 4 cut(s) 63, 539, 682, 1079
PspPI GGNCC 2 cut(s) 108, 1077
PspPPI RGGWCCY 1 cut(s) 1077
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 3 cut(s) 429, 450, 977
RsaNI GTAC 3 cut(s) 428, 449, 976
RseI CAYNNNNRTG 2 cut(s) 528, 1025
SalI GTCGAC 1 cut(s) 316
SaqAI TTAA 4 cut(s) 231, 240, 881, 912
SatI GCNGC 4 cut(s) 797, 830, 1092, 1167
Sau3AI GATC 6 cut(s) 260, 337, 469, 520, 1071, 1178
Sau96I GGNCC 2 cut(s) 108, 1077
SchI GAGTC 2 cut(s) 185, 1094
ScrFI CCNGG 2 cut(s) 377, 1250
SduI GDGCHC 1 cut(s) 540
SfaNI GCATC 2 cut(s) 592, 1216
SfcI CTRYAG 2 cut(s) 664, 1200
SinI GGWCC 1 cut(s) 1077
SmiMI CAYNNNNRTG 2 cut(s) 528, 1025
Sse9I AATT 8 cut(s) 244, 371, 416, 437, 873, 882, 1010, 1057
SsiI CCGC 3 cut(s) 840, 1091, 1166
SspMI CTAG 2 cut(s) 833, 894
StyD4I CCNGG 2 cut(s) 375, 1248
StyI CCWWGG 2 cut(s) 392, 858
TaaI ACNGT 3 cut(s) 19, 685, 1201
TaiI ACGT 6 cut(s) 351, 433, 454, 813, 826, 1161
TaqI TCGA 6 cut(s) 30, 317, 588, 1181, 1210, 1218
TasI AATT 8 cut(s) 244, 371, 416, 437, 873, 882, 1010, 1057
TatI WGTACW 1 cut(s) 975
TauI GCSGC 2 cut(s) 1094, 1169
TfiI GAWTC 2 cut(s) 223, 1243
Tru1I TTAA 4 cut(s) 231, 240, 881, 912
Tru9I TTAA 4 cut(s) 231, 240, 881, 912
TscAI CASTG 1 cut(s) 1012
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 796, 829
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 5 cut(s) 178, 549, 695, 763, 1146
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 1 cut(s) 1012
Van91I CCANNNNNTGG 2 cut(s) 105, 398
VpaK11BI GGWCC 1 cut(s) 1077
VspI ATTAAT 1 cut(s) 881
XapI RAATTY 4 cut(s) 416, 437, 873, 1010
XmiI GTMKAC 4 cut(s) 317, 345, 687, 1066
XmnI GAANNNNTTC 1 cut(s) 770
XspI CTAG 2 cut(s) 833, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.