RchiOBHm_Chr4g0387951

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000449
Physical Location & Seq
Reverse (-)
3101301 .. 3102650
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36122

Sequence Viewer

Length: 1350 bp
ATGGCGCAAAGAAACGAAAGGAGAATTCGCTGCGATTCCTCATCAGCAGCAGAAACGGTGGCCAATATCGAAGAGCTTCTGTCTCAGATACTTGTATTGGCTCCAGCCTTATCTCTGATCCGTTTCAAGTGCGTCTCCAGGCACTGGCTCACTCTCATCTCCGACCCCGGATTTTTTCGCCGCCACTTACATCAAAAGTCGAAGATCTCCGGCTTCTTTTCTAGCCAAACCGAAGACGAGTCCTTCAAGTCCATTGCTTTTAGTGACCGCGAAATCCCATCTGGGAATCCCTTCAAAACTATAAATGATTCCTTCGGTGATGGCTCCAGGTTGAAGATTATTCAATCCTGCAACGGCCTCTTCCTTTGCCTTCGCTACTCTAGGGATATTTCTCTTTTGCGTCAATCATATGGTGTCAAAGATCATCCCGCATATGTTGTGAATCCCACAACCAACAAATTCTTGGCTCTTTATTCTCCAAGCGTTAAGAAAAATAAAAAACGTTCTAGTTTTTTAGTACGTTATGCTCTGGCTTTTGACCCTTCCATATCACCTTTTTACAAGGTGGTCTGCGTGACTAACTACTCGTTTCGGGAGCAGTCCCACCACATAGACATCTATTCCTCTGAGACTCAAGAGTGGAAGGAGCTTCTCAGGGTTCCTTTCTTCCCCAGCTATCCCATGCACTTTAACCACAGGAGCACGGAAGGGGCAGTATACTGTAATGGCAAGATTCATTGGATAAGACGCCTAACCGACAGATTTGGCTATGACTCATGGTGGCAGTTCCGCGATGGTAGATTCATAAGAGATGAAGGTGACGTGTTACACTACTTTGACATAGATGAACAAAGTTTGCGACTCGTCGCTGCTGCTACTCCTGTTCCTGTGGCTGTAAGAGCTGATAGATATTTTGGCGAGTCTGGCGGCCATTTGTATTTGATTGAGTTTTACAAGCATTATGACCCCCAATTTGACATCATGGAGATGGAGAGGGACTACTCTTGCTGGTTTATCAAGCATCACGTTGATCTGAATCTGGTATTCGCAGCTCTTCCTAACACAAGTTCTTTTGTTGTCTTGTGCCTCTCTCCAGAGGAGGAAAAGGATGCGGAGGAGGAGGATTCTTCATGTAACCTTTGGTTGCATATGCCTGGCAAAGTCATGTCTTATAATCTAAGGAATAAGACCTTAGATTATGCTGATACAATTATAGTGGTATTGTGTAATCAGTATGTTCTTATTTGCGGTCACAGATTTACATATGAAATTAGCAGTTACTTGACTATTGCCGGTGAAAATCCATCAAAGTTTAGCCAATCTTCACTAAATTTTATAATAGCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

449

Amino Acids

52.06

Weight (kDa)

6.98

Isoelectric Point (pI)

63.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 71 - 242 1.1e-09 F-box associated beta propeller domain
FBA_1 PF07734 108 - 251 9.2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1173, 1337
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 1 cut(s) 717
AccII CGCG 2 cut(s) 270, 792
AciI CCGC 7 cut(s) 181, 268, 429, 790, 927, 1112, 1248
AclI AACGTT 1 cut(s) 502
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 2 cut(s) 60, 928
AcsI RAATTY 3 cut(s) 24, 458, 1330
AcyI GRCGYC 1 cut(s) 748
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 1 cut(s) 144
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 5 cut(s) 127, 247, 295, 334, 344
AjiI CACGTC 1 cut(s) 823
AjnI CCWGG 3 cut(s) 137, 326, 1153
AluBI AGCT 5 cut(s) 76, 649, 675, 902, 1052
AluI AGCT 5 cut(s) 76, 649, 675, 902, 1052
Alw21I GWGCWC 1 cut(s) 704
Alw26I GTCTC 3 cut(s) 87, 139, 623
AlwI GGATC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 144
AoxI GGCC 3 cut(s) 60, 355, 928
ApeKI GCWGC 5 cut(s) 30, 47, 869, 872, 1049
ApoI RAATTY 3 cut(s) 24, 458, 1330
ArsI GACNNNNNNTTYG 2 cut(s) 956, 988
Asp700I GAANNNNTTC 2 cut(s) 75, 290
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 4 cut(s) 329, 543, 830, 1307
BalI TGGCCA 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 704
BbvI GCAGC 5 cut(s) 17, 59, 856, 859, 1061
BccI CCATC 5 cut(s) 286, 314, 788, 982, 1312
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 3 cut(s) 139, 328, 1155
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 3 cut(s) 87, 139, 623
BfaI CTAG 3 cut(s) 222, 381, 507
BglII AGATCT 1 cut(s) 204
BisI GCNGC 7 cut(s) 31, 48, 181, 870, 873, 928, 1050
BlsI GCNGC 7 cut(s) 32, 49, 182, 871, 874, 929, 1051
Bme1390I CCNGG 4 cut(s) 139, 168, 328, 1155
BmgBI CACGTC 1 cut(s) 823
BmiI GGNNCC 3 cut(s) 102, 325, 660
BmrFI CCNGG 4 cut(s) 139, 168, 328, 1155
BmsI GCATC 2 cut(s) 1030, 1099
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 4 cut(s) 87, 121, 310, 1077
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 1035
BsaHI GRCGYC 1 cut(s) 748
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 1292
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 1035
BseBI CCWGG 3 cut(s) 139, 328, 1155
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 424, 1114
BseJI GATNNNNATC 1 cut(s) 1035
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 98, 618, 667
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 3 cut(s) 1112, 1130, 1133
BseXI GCAGC 5 cut(s) 17, 59, 856, 859, 1061
BseYI CCCAGC 1 cut(s) 671
Bsh1236I CGCG 2 cut(s) 270, 792
BshFI GGCC 3 cut(s) 62, 357, 930
BsiHKAI GWGCWC 1 cut(s) 704
BsiSI CCGG 3 cut(s) 168, 210, 1293
BslFI GGGAC 2 cut(s) 586, 1010
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 3 cut(s) 87, 139, 623
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 586, 1010
BsnI GGCC 3 cut(s) 62, 357, 930
Bsp1286I GDGCHC 1 cut(s) 704
Bsp143I GATC 4 cut(s) 117, 204, 421, 1030
BspACI CCGC 7 cut(s) 181, 268, 429, 790, 927, 1112, 1248
BspANI GGCC 3 cut(s) 62, 357, 930
BspCNI CTCAG 3 cut(s) 97, 619, 666
BspFNI CGCG 2 cut(s) 270, 792
BspLI GGNNCC 3 cut(s) 102, 325, 660
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 2 cut(s) 66, 1059
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 1292
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 1292
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 4 cut(s) 117, 204, 421, 1030
BssNAI GTATAC 1 cut(s) 718
BssNI GRCGYC 1 cut(s) 748
Bst1107I GTATAC 1 cut(s) 718
Bst2UI CCWGG 3 cut(s) 139, 328, 1155
Bst4CI ACNGT 2 cut(s) 58, 722
Bst6I CTCTTC 3 cut(s) 66, 365, 1059
BstACI GRCGYC 1 cut(s) 748
BstDEI CTNAG 5 cut(s) 84, 627, 653, 1178, 1192
BstF5I GGATG 2 cut(s) 424, 1114
BstFNI CGCG 2 cut(s) 270, 792
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 120, 207, 424, 1033
BstMAI GTCTC 3 cut(s) 87, 139, 623
BstMBI GATC 4 cut(s) 117, 204, 421, 1030
BstMWI GCNNNNNNNGC 2 cut(s) 899, 924
BstNI CCWGG 3 cut(s) 139, 328, 1155
BstSCI CCNGG 4 cut(s) 137, 166, 326, 1153
BstUI CGCG 2 cut(s) 270, 792
BstV1I GCAGC 5 cut(s) 17, 59, 856, 859, 1061
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BstZ17I GTATAC 1 cut(s) 718
BsuRI GGCC 3 cut(s) 62, 357, 930
BtgZI GCGATG 1 cut(s) 807
BtrI CACGTC 1 cut(s) 823
BtsCI GGATG 2 cut(s) 424, 1114
BtsIMutI CAGTG 2 cut(s) 142, 1345
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 1292
CseI GACGC 3 cut(s) 121, 389, 756
Csp6I GTAC 1 cut(s) 518
CspCI CAANNNNNGTGG 2 cut(s) 1197, 1232
CviAII CATG 5 cut(s) 682, 777, 982, 1131, 1165
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 5 cut(s) 84, 627, 653, 1178, 1192
DpnI GATC 4 cut(s) 119, 206, 423, 1032
DpnII GATC 4 cut(s) 117, 204, 421, 1030
EaeI YGGCCR 2 cut(s) 60, 928
Eam1104I CTCTTC 3 cut(s) 66, 365, 1059
EarI CTCTTC 3 cut(s) 66, 365, 1059
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 3 cut(s) 137, 326, 1153
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 5 cut(s) 685, 780, 985, 1134, 1168
FaqI GGGAC 2 cut(s) 586, 1010
FatI CATG 5 cut(s) 681, 776, 981, 1130, 1164
FauI CCCGC 1 cut(s) 436
FauNDI CATATG 4 cut(s) 409, 433, 1149, 1264
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 7 cut(s) 31, 48, 181, 870, 873, 928, 1050
FokI GGATG 2 cut(s) 411, 1121
Fsp4HI GCNGC 7 cut(s) 31, 48, 181, 870, 873, 928, 1050
FspBI CTAG 3 cut(s) 222, 381, 507
GlaI GCGC 1 cut(s) 6
GluI GCNGC 7 cut(s) 31, 48, 181, 870, 873, 928, 1050
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 4 cut(s) 87, 121, 310, 1077
HaeIII GGCC 3 cut(s) 62, 357, 930
HapII CCGG 3 cut(s) 168, 210, 1293
HgaI GACGC 3 cut(s) 121, 389, 756
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 748
Hin1II CATG 5 cut(s) 685, 780, 985, 1134, 1168
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 3 cut(s) 168, 210, 1293
HphI GGTGA 4 cut(s) 329, 543, 830, 1307
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 5 cut(s) 87, 117, 163, 628, 1035
Hpy188III TCNNGA 3 cut(s) 593, 635, 1094
Hpy8I GTNNAC 1 cut(s) 718
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 8 cut(s) 253, 301, 322, 380, 552, 637, 701, 809
HpyCH4III ACNGT 2 cut(s) 58, 722
HpyCH4IV ACGT 4 cut(s) 502, 520, 822, 1026
HpyCH4V TGCA 3 cut(s) 351, 685, 1147
HpyF10VI GCNNNNNNNGC 2 cut(s) 899, 924
HpyF3I CTNAG 5 cut(s) 84, 627, 653, 1178, 1192
HpySE526I ACGT 4 cut(s) 502, 520, 822, 1026
Hsp92I GRCGYC 1 cut(s) 748
Hsp92II CATG 5 cut(s) 685, 780, 985, 1134, 1168
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 117, 204, 421, 1030
LguI GCTCTTC 2 cut(s) 66, 1059
LmnI GCTCC 5 cut(s) 106, 329, 595, 646, 699
Lsp1109I GCAGC 5 cut(s) 17, 59, 856, 859, 1061
LweI GCATC 2 cut(s) 1030, 1099
MaeI CTAG 3 cut(s) 222, 381, 507
MaeII ACGT 4 cut(s) 502, 520, 822, 1026
MaeIII GTNAC 7 cut(s) 263, 574, 818, 825, 1133, 1250, 1277
MalI GATC 4 cut(s) 119, 206, 423, 1032
MboI GATC 4 cut(s) 117, 204, 421, 1030
MboII GAAGA 9 cut(s) 83, 214, 245, 346, 352, 658, 1046, 1119, 1314
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 704
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 6 cut(s) 24, 458, 971, 1209, 1269, 1330
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 5 cut(s) 248, 625, 767, 855, 929
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 2 cut(s) 75, 290
MscI TGGCCA 1 cut(s) 62
MseI TTAA 2 cut(s) 486, 690
MslI CAYNNNNRTG 1 cut(s) 986
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 3 cut(s) 168, 210, 1293
MspR9I CCNGG 4 cut(s) 139, 168, 328, 1155
MvaI CCWGG 3 cut(s) 139, 328, 1155
MvnI CGCG 2 cut(s) 270, 792
MwoI GCNNNNNNNGC 2 cut(s) 899, 924
NciI CCSGG 1 cut(s) 168
NdeI CATATG 4 cut(s) 409, 433, 1149, 1264
NdeII GATC 4 cut(s) 117, 204, 421, 1030
NlaIII CATG 5 cut(s) 685, 780, 985, 1134, 1168
NlaIV GGNNCC 3 cut(s) 102, 325, 660
NmuCI GTSAC 4 cut(s) 263, 574, 818, 1250
PciSI GCTCTTC 2 cut(s) 66, 1059
PdmI GAANNNNTTC 2 cut(s) 75, 290
PfeI GAWTC 8 cut(s) 35, 286, 308, 442, 733, 801, 1036, 1124
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 7 cut(s) 32, 49, 182, 871, 874, 929, 1051
PleI GAGTC 5 cut(s) 247, 625, 767, 855, 928
PpsI GAGTC 5 cut(s) 247, 625, 767, 855, 928
PsiI TTATAA 2 cut(s) 1173, 1337
Psp1406I AACGTT 1 cut(s) 502
Psp6I CCWGG 3 cut(s) 137, 326, 1153
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 3 cut(s) 137, 326, 1153
PspN4I GGNNCC 3 cut(s) 102, 325, 660
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 986
SapI GCTCTTC 2 cut(s) 66, 1059
SaqAI TTAA 2 cut(s) 486, 690
SatI GCNGC 7 cut(s) 31, 48, 181, 870, 873, 928, 1050
Sau3AI GATC 4 cut(s) 117, 204, 421, 1030
SchI GAGTC 5 cut(s) 248, 625, 767, 855, 929
ScrFI CCNGG 4 cut(s) 139, 168, 328, 1155
SduI GDGCHC 1 cut(s) 704
SfaNI GCATC 2 cut(s) 1030, 1099
SmiMI CAYNNNNRTG 1 cut(s) 986
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 6 cut(s) 24, 458, 971, 1209, 1269, 1330
SsiI CCGC 7 cut(s) 181, 268, 429, 790, 927, 1112, 1248
SspMI CTAG 3 cut(s) 222, 381, 507
StyD4I CCNGG 4 cut(s) 137, 166, 326, 1153
TaaI ACNGT 2 cut(s) 58, 722
TaiI ACGT 4 cut(s) 505, 523, 825, 1029
TaqI TCGA 2 cut(s) 69, 200
TasI AATT 6 cut(s) 24, 458, 971, 1209, 1269, 1330
TauI GCSGC 2 cut(s) 183, 930
TfiI GAWTC 8 cut(s) 35, 286, 308, 442, 733, 801, 1036, 1124
Tru1I TTAA 2 cut(s) 486, 690
Tru9I TTAA 2 cut(s) 486, 690
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 4 cut(s) 263, 574, 818, 1250
TseI GCWGC 5 cut(s) 30, 47, 869, 872, 1049
Tsp45I GTSAC 4 cut(s) 263, 574, 818, 1250
TspDTI ATGAA 6 cut(s) 725, 793, 828, 861, 1119, 1281
TspGWI ACGGA 2 cut(s) 110, 719
TspRI CASTG 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 3 cut(s) 24, 458, 1330
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 2 cut(s) 75, 290
XspI CTAG 3 cut(s) 222, 381, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.