Rorug03G0314200

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000449
Physical Location & Seq
Forward (+)
33788177 .. 33789726
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0314200.1

Sequence Viewer

Length: 492 bp
ATGCTTTCGACTCTCAGACTCTCCCCTTCTCCCTTTGGCGCTGTCCCCATTTTGCTTCTGCCTTCCAGGAGTTCCAGCCTTCTAGTCCGCCGAGCCACCTCCACCGCTCCACGCTTGAGCCACCTCCTCCGCCACCGAACCACCTCCACGGCTCCACTGCGACTCCTTCAATCCCAGATCCCAGATTTGGGACACAGCAGGACAAGAAAGGTTTCAAAGTCTCAGGGCAGCATTTTATGTGGAGCAGATTGTTGTGTTCTTGTTTATGATGTGAATGTTCTAAGATCATTTGAAACACTTCAGAACTGGCATCAAGAGTTTCTCAAACAGGTGGGTCCAGCTGACACTGAGGCATTTCCATTTATACTACTCGGCAACAAAATTGATCTAGATGGCGGAAACAGCAGAGCAGTATGGGCATACATAAAATATATAGAGGCTGAGGCATTTCATCATCGGTTTTATGTCCCCCCTGTTATATGTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

163

Amino Acids

18.23

Weight (kDa)

9.46

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 77 - 138 1e-09 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 107
AciI CCGC 4 cut(s) 88, 105, 130, 396
AclWI GGATC 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 187, 188
AgsI TTSAA 3 cut(s) 170, 216, 293
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 228
Asp700I GAANNNNTTC 2 cut(s) 211, 297
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 335
AvaII GGWCC 1 cut(s) 335
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 2 cut(s) 83, 389
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 2 cut(s) 153, 336
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 319
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 188
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 187, 188
BseMII CTCAG 4 cut(s) 28, 236, 339, 432
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 240
BslFI GGGAC 3 cut(s) 29, 204, 452
BslI CCNNNNNNNGG 2 cut(s) 187, 188
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 3 cut(s) 29, 204, 452
Bsp143I GATC 3 cut(s) 177, 284, 385
BspACI CCGC 4 cut(s) 88, 105, 130, 396
BspCNI CTCAG 4 cut(s) 27, 235, 340, 433
BspLI GGNNCC 2 cut(s) 153, 336
BspPI GGATC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 3 cut(s) 177, 284, 385
Bst2UI CCWGG 1 cut(s) 67
BstDEI CTNAG 5 cut(s) 14, 222, 281, 348, 441
BstDSI CCRYGG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 3 cut(s) 180, 287, 388
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 177, 284, 385
BstMWI GCNNNNNNNGC 2 cut(s) 402, 416
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 155, 345
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 335
CviJI RGCY 6 cut(s) 78, 95, 120, 152, 341, 440
CviKI_1 RGCY 6 cut(s) 78, 95, 120, 152, 341, 440
DdeI CTNAG 5 cut(s) 14, 222, 281, 348, 441
DpnI GATC 3 cut(s) 179, 286, 387
DpnII GATC 3 cut(s) 177, 284, 385
EciI GGCGGA 3 cut(s) 77, 119, 411
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 65
FaqI GGGAC 3 cut(s) 29, 204, 452
Fnu4HI GCNGC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 2 cut(s) 83, 389
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 229
HaeII RGCGCY 1 cut(s) 42
HhaI GCGC 1 cut(s) 41
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 3 cut(s) 10, 18, 162
Hpy188I TCNGA 2 cut(s) 17, 303
Hpy188III TCNNGA 2 cut(s) 314, 389
HpyAV CCTTC 4 cut(s) 36, 72, 89, 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 402, 416
HpyF3I CTNAG 5 cut(s) 14, 222, 281, 348, 441
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 3 cut(s) 177, 284, 385
LmnI GCTCC 3 cut(s) 112, 157, 242
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 319
MaeI CTAG 2 cut(s) 83, 389
MalI GATC 3 cut(s) 179, 286, 387
MbiI CCGCTC 1 cut(s) 107
MboI GATC 3 cut(s) 177, 284, 385
MflI RGATCY 1 cut(s) 177
MluCI AATT 1 cut(s) 381
MlyI GAGTC 3 cut(s) 4, 12, 156
MnlI CCTC 7 cut(s) 109, 134, 137, 154, 343, 430, 436
MroXI GAANNNNTTC 2 cut(s) 211, 297
MspA1I CMGCKG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 402, 416
NdeII GATC 3 cut(s) 177, 284, 385
NlaIV GGNNCC 2 cut(s) 153, 336
NmeAIII GCCGAG 2 cut(s) 116, 351
PdmI GAANNNNTTC 2 cut(s) 211, 297
PfoI TCCNGGA 1 cut(s) 65
PkrI GCNGC 1 cut(s) 230
PleI GAGTC 3 cut(s) 4, 12, 156
PpsI GAGTC 3 cut(s) 4, 12, 156
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 153, 336
PspPI GGNCC 1 cut(s) 335
PsuI RGATCY 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 341
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 3 cut(s) 177, 284, 385
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 3 cut(s) 4, 12, 156
ScrFI CCNGG 1 cut(s) 67
SetI ASST 6 cut(s) 101, 126, 146, 213, 333, 343
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 381
SsiI CCGC 4 cut(s) 88, 105, 130, 396
SspMI CTAG 2 cut(s) 83, 389
StyD4I CCNGG 1 cut(s) 65
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 381
TscAI CASTG 2 cut(s) 162, 352
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 440
TspRI CASTG 2 cut(s) 162, 352
VpaK11BI GGWCC 1 cut(s) 335
XbaI TCTAGA 1 cut(s) 388
XmnI GAANNNNTTC 2 cut(s) 211, 297
XspI CTAG 2 cut(s) 83, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.