FvH4_1g12890

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000449
Physical Location & Seq
Reverse (-)
7122371 .. 7123078
708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12890.t1

Sequence Viewer

Length: 708 bp
ATGGTTTGGCTTACGATCCTTCCAAATCGCCTCATTACAAGGTGGTCTATACACTATGATTTCAAGGAGATGGCCATGCAGTTTGATGCGAGGAGCAGCGAAAGCGCGGTTTTCTGCAATGGCATACTTCATTGGATTAGACACAGTCATTATGCATCACTGCTGTCTCGTGATGATGAGTTTCTCAGACGAGAGACTGATGTATCCCACTACTTTGACTTAGCTGAAGAACGATTGGGACTCGTGTCTAGTACTCCTCCTCTTCCCTTGCTTGTCAAAAACATTACTGCTACATGGCCGAGATTGAGGCAAAGATATTTTGGGGAGTCGGCTGGCCATTTGTATTTGATCGAGACTTACCAGCATTGGAACACCCAATTTGATGTGATGGAGATGGAGAGAGACTACTCTGGCTGGTTTGTCAAGTATCATGTTGATCTTAATCCGCTAGTGGCAGCTTTTCCTGGACTGGATTGGAATGCTTTTGTTGTCTTGGGTCTTTTTCCAGAGAATGGGGTTGAGGAGGATAGTTCAACTCATCTTTTGTTGCACCTGCCTGGTAAGATCATATCCTATAATCTGAGGAATGAGACCTTCAAGACATCTGTTGAGTTAGCCGATGAGAAACTTCATCTAGCTTTCGGTGATAATCATGGTATTCAAGACTATGTTACTTTTCCTTATATGGAGACTCTAGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

236

Amino Acids

27.45

Weight (kDa)

5.38

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 561
Acc36I ACCTGC 1 cut(s) 561
AccB7I CCANNNNNTGG 1 cut(s) 512
AccII CGCG 1 cut(s) 107
AciI CCGC 2 cut(s) 107, 446
AclWI GGATC 1 cut(s) 10
AcoI YGGCCR 3 cut(s) 72, 296, 334
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 4 cut(s) 64, 534, 598, 662
AjnI CCWGG 2 cut(s) 463, 556
AluBI AGCT 4 cut(s) 224, 458, 638, 698
AluI AGCT 4 cut(s) 224, 458, 638, 698
Alw26I GTCTC 6 cut(s) 171, 188, 347, 396, 584, 683
AlwI GGATC 1 cut(s) 10
AoxI GGCC 3 cut(s) 72, 296, 334
ApeKI GCWGC 2 cut(s) 96, 455
AspLEI GCGC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 656
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BalI TGGCCA 2 cut(s) 74, 336
BauI CACGAG 2 cut(s) 168, 242
BbvI GCAGC 2 cut(s) 108, 467
BccI CCATC 3 cut(s) 64, 382, 388
BciT130I CCWGG 2 cut(s) 465, 558
BciVI GTATCC 1 cut(s) 214
BcoDI GTCTC 6 cut(s) 171, 188, 347, 396, 584, 683
BfaI CTAG 4 cut(s) 249, 449, 635, 695
BfuAI ACCTGC 1 cut(s) 561
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 2 cut(s) 97, 456
BlsI GCNGC 2 cut(s) 98, 457
BmcAI AGTACT 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 465, 558
BmrFI CCNGG 2 cut(s) 465, 558
BmsI GCATC 2 cut(s) 76, 164
BoxI GACNNNNGTC 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 584
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 2 cut(s) 465, 558
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 2 cut(s) 199, 572
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 4 cut(s) 106, 246, 249, 536
BseXI GCAGC 2 cut(s) 108, 467
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 3 cut(s) 74, 298, 336
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 6 cut(s) 171, 188, 347, 396, 584, 683
BsmFI GGGAC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 3 cut(s) 74, 298, 336
Bso31I GGTCTC 1 cut(s) 584
Bsp143I GATC 4 cut(s) 15, 348, 436, 564
BspACI CCGC 2 cut(s) 107, 446
BspANI GGCC 3 cut(s) 74, 298, 336
BspCNI CTCAG 2 cut(s) 198, 573
BspFNI CGCG 1 cut(s) 107
BspMI ACCTGC 1 cut(s) 561
BspPI GGATC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 124
BsrI ACTGG 1 cut(s) 474
BssMI GATC 4 cut(s) 15, 348, 436, 564
BssSI CACGAG 2 cut(s) 168, 242
Bst2BI CACGAG 2 cut(s) 168, 242
Bst2UI CCWGG 2 cut(s) 465, 558
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 3 cut(s) 185, 220, 581
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 4 cut(s) 18, 351, 439, 567
BstMAI GTCTC 6 cut(s) 171, 188, 347, 396, 584, 683
BstMBI GATC 4 cut(s) 15, 348, 436, 564
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 2 cut(s) 465, 558
BstPAI GACNNNNGTC 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 463, 556
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 108, 467
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 3 cut(s) 74, 298, 336
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 158
BveI ACCTGC 1 cut(s) 561
Cac8I GCNNGC 1 cut(s) 334
CfoI GCGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 252
CviAII CATG 4 cut(s) 76, 294, 431, 653
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 3 cut(s) 185, 220, 581
DpnI GATC 4 cut(s) 17, 350, 438, 566
DpnII GATC 4 cut(s) 15, 348, 436, 564
EaeI YGGCCR 3 cut(s) 72, 296, 334
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 584
Eco57I CTGAAG 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 463, 556
EcoT22I ATGCAT 1 cut(s) 157
FaeI CATG 4 cut(s) 79, 297, 434, 656
FaqI GGGAC 1 cut(s) 252
FatI CATG 4 cut(s) 75, 293, 430, 652
Fnu4HI GCNGC 2 cut(s) 97, 456
Fsp4HI GCNGC 2 cut(s) 97, 456
FspBI CTAG 4 cut(s) 249, 449, 635, 695
GlaI GCGC 1 cut(s) 106
GluI GCNGC 2 cut(s) 97, 456
HaeIII GGCC 3 cut(s) 74, 298, 336
HhaI GCGC 1 cut(s) 107
Hin1II CATG 4 cut(s) 79, 297, 434, 656
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 3 cut(s) 240, 326, 691
HphI GGTGA 1 cut(s) 656
Hpy188I TCNGA 2 cut(s) 188, 582
Hpy188III TCNNGA 5 cut(s) 170, 352, 506, 598, 662
HpyAV CCTTC 2 cut(s) 29, 604
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 79, 117, 155, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 3 cut(s) 185, 220, 581
Hsp92II CATG 4 cut(s) 79, 297, 434, 656
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 4 cut(s) 15, 348, 436, 564
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 2 cut(s) 108, 467
LweI GCATC 2 cut(s) 76, 164
MaeI CTAG 4 cut(s) 249, 449, 635, 695
MaeIII GTNAC 1 cut(s) 670
MalI GATC 4 cut(s) 17, 350, 438, 566
MboI GATC 4 cut(s) 15, 348, 436, 564
MboII GAAGA 2 cut(s) 239, 254
MlsI TGGCCA 2 cut(s) 74, 336
MluCI AATT 1 cut(s) 377
MluNI TGGCCA 2 cut(s) 74, 336
MlyI GAGTC 3 cut(s) 234, 335, 685
MnlI CCTC 8 cut(s) 41, 84, 267, 270, 300, 514, 517, 576
Mox20I TGGCCA 2 cut(s) 74, 336
Mph1103I ATGCAT 1 cut(s) 157
MscI TGGCCA 2 cut(s) 74, 336
MseI TTAA 1 cut(s) 441
Msp20I TGGCCA 2 cut(s) 74, 336
MspR9I CCNGG 2 cut(s) 465, 558
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 2 cut(s) 465, 558
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 4 cut(s) 15, 348, 436, 564
NlaIII CATG 4 cut(s) 79, 297, 434, 656
NmeAIII GCCGAG 1 cut(s) 324
NsiI ATGCAT 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 561
PctI GAATGC 1 cut(s) 484
PflFI GACNNNGTC 1 cut(s) 144
PflMI CCANNNNNTGG 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 2 cut(s) 98, 457
PleI GAGTC 3 cut(s) 234, 334, 685
PpsI GAGTC 3 cut(s) 234, 334, 685
PshAI GACNNNNGTC 1 cut(s) 244
Psp6I CCWGG 2 cut(s) 463, 556
PspGI CCWGG 2 cut(s) 463, 556
PsyI GACNNNGTC 1 cut(s) 144
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 2 cut(s) 97, 456
Sau3AI GATC 4 cut(s) 15, 348, 436, 564
ScaI AGTACT 1 cut(s) 253
SchI GAGTC 3 cut(s) 234, 335, 685
ScrFI CCNGG 2 cut(s) 465, 558
SetI ASST 7 cut(s) 44, 226, 460, 555, 596, 640, 700
SfaNI GCATC 2 cut(s) 76, 164
Sse9I AATT 1 cut(s) 377
SsiI CCGC 2 cut(s) 107, 446
SspMI CTAG 4 cut(s) 249, 449, 635, 695
StyD4I CCNGG 2 cut(s) 463, 556
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 351
TasI AATT 1 cut(s) 377
TatI WGTACW 1 cut(s) 251
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 165
TseI GCWGC 2 cut(s) 96, 455
TspDTI ATGAA 2 cut(s) 119, 620
TspRI CASTG 1 cut(s) 165
Tth111I GACNNNGTC 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 512
XspI CTAG 4 cut(s) 249, 449, 635, 695
ZrmI AGTACT 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.