RLG00000010028

F-box protein At5g07610-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
61884982 .. 61885305
324 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010028

Sequence Viewer

Length: 324 bp
ATGGAGAGGGACTACTCTGGCTGGTTTGTCAAGTATCATGTTGATCTTCATTCGGTATTCACAGCTCTTCCTGATCCGAATGATTTTGTCATCTTGTGCCTCTCTCAAGAGAAGGAAAAACATGAAGAGGAGGATTCTTTAGCTGATCTTTTGTTGTATATGCCAGATAAGGTCATATCTTATAATCTGAGGAATAAGACCTTCAAGGCATCTGTTGTGGAGTTGGCCAATCAAGAACTTCTTCTTGCTATGGATGGTCGATTCTATAGGGATGAGGTTGTTATGTATCCTTACATGGAGGGTTTAGCTTGTGTGGAACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.59

Weight (kDa)

4.65

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 225
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 3 cut(s) 65, 143, 308
AluI AGCT 3 cut(s) 65, 143, 308
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 240
BalI TGGCCA 1 cut(s) 227
BccI CCATC 1 cut(s) 248
BciVI GTATCC 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 265
BfuI GTATCC 1 cut(s) 297
BmsI GCATC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 90
BseGI GGATG 2 cut(s) 259, 277
BseMII CTCAG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 227
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 3 cut(s) 43, 73, 145
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 180
BspPI GGATC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 72
BssMI GATC 3 cut(s) 43, 73, 145
Bst6I CTCTTC 2 cut(s) 72, 120
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 259, 277
BstKTI GATC 3 cut(s) 46, 76, 148
BstMBI GATC 3 cut(s) 43, 73, 145
BstSFI CTRYAG 1 cut(s) 265
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 259, 277
CviAII CATG 3 cut(s) 38, 122, 295
CviJI RGCY 5 cut(s) 21, 65, 143, 227, 308
CviKI_1 RGCY 5 cut(s) 21, 65, 143, 227, 308
DdeI CTNAG 1 cut(s) 188
DpnI GATC 3 cut(s) 45, 75, 147
DpnII GATC 3 cut(s) 43, 73, 145
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 72, 120
EarI CTCTTC 2 cut(s) 72, 120
FaeI CATG 3 cut(s) 41, 125, 298
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 1 cut(s) 23
FatI CATG 3 cut(s) 37, 121, 294
FokI GGATG 2 cut(s) 266, 284
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 3 cut(s) 41, 125, 298
HinfI GANTC 2 cut(s) 134, 261
Hpy188I TCNGA 2 cut(s) 78, 189
Hpy188III TCNNGA 3 cut(s) 71, 107, 233
HpyAV CCTTC 2 cut(s) 106, 211
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 3 cut(s) 41, 125, 298
Kzo9I GATC 3 cut(s) 43, 73, 145
LguI GCTCTTC 1 cut(s) 72
LpnPI CCDG 4 cut(s) 3, 7, 84, 177
LweI GCATC 1 cut(s) 218
MalI GATC 3 cut(s) 45, 75, 147
MboI GATC 3 cut(s) 43, 73, 145
MboII GAAGA 4 cut(s) 38, 59, 137, 233
MlsI TGGCCA 1 cut(s) 227
MluNI TGGCCA 1 cut(s) 227
MnlI CCTC 6 cut(s) 110, 121, 124, 183, 268, 292
Mox20I TGGCCA 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 240
MscI TGGCCA 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 227
NdeII GATC 3 cut(s) 43, 73, 145
NlaIII CATG 3 cut(s) 41, 125, 298
PciSI GCTCTTC 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 134, 261
PsiI TTATAA 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 43, 73, 145
SetI ASST 6 cut(s) 67, 145, 174, 203, 279, 310
SfaNI GCATC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
TaqI TCGA 1 cut(s) 259
TfiI GAWTC 2 cut(s) 134, 261
TspDTI ATGAA 2 cut(s) 38, 138
XmnI GAANNNNTTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.