Rmu_sc0002180.1_g000030

F-box protein At5g07610-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002180.1
Physical Location & Seq
Forward (+)
105563 .. 106684
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002180.1_g000030.1.cds

Sequence Viewer

Length: 1122 bp
atggcacagttgagcgtttcttcagcagagagcgtagcgaatattgaagagcttcttagtcagattcttgtatgggttcctgctctatctctgatccgtttcaagtgcgtctccaagcactggctcgctctcatctccgaccccgagttccgtcaccgtcacaccctccgaaaccctaactccaaaatctcagctttcttctctccccaaaccaatgaagaaaccttcaagtccatccgtcttggtagccatgaaatcccacctaggtgcaatcccttcaaaaccctaaacaattccgtcgctgatgaatcaaagttgaggattcttcagtcctgcaatggcctctttctctgccatattcctattcctatatatggagaacaaacaaaacatcatcccgtatatgttgtcaatcccacaaccaaccaattccgggctctctcttttccaattgtcaaagaagatagggacagatatacttttgtacgctatgctttggtatttgatccttccacatcgcctcattacaaggtggtctgcgtgaataactttccccattattataaaaggaggcagcacagaatagacatatattcatctgagaccggagagtggaagcgtcttgaggttcctttcttcccaagcccttctgacgtgggcagacaccatgatttcataaagcaggccatgaactttgacttcaggagtggggaaggcgccgtatactgcaacggcgcagttcattggataagagacagaggggtagcaagattgcaactctgctggttcccagattatagggttgaattcacaagagaggaaactgatgtgctgcactacttcgacataggccaagagcgtttgctggtcgctccagctacccctcctgtccccttggttgtcaagaacattccactgaaggttagtggtaatggctgcaagattcccactgagtggccgtcattgactaagagatattttggggagtgcggtggctgtttgtacttgattgagacttataagcattgcaacactcaatttgacgtcatgcagatggagagggactactctggctggcttgtcaagtatcatgttgatcttaaccaaatggcacacttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

373

Amino Acids

43.3

Weight (kDa)

8.55

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 564, 1020
AatII GACGTC 1 cut(s) 1047
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 2 cut(s) 120, 954
AccI GTMKAC 1 cut(s) 723
AciI CCGC 1 cut(s) 990
AclWI GGATC 2 cut(s) 88, 500
AcoI YGGCCR 1 cut(s) 956
AcsI RAATTY 1 cut(s) 806
AcuI CTGAAG 4 cut(s) 6, 311, 685, 938
AcyI GRCGYC 2 cut(s) 717, 1044
AdeI CACNNNGTG 1 cut(s) 954
AfaI GTAC 2 cut(s) 486, 1004
AfiI CCNNNNNNNGG 5 cut(s) 120, 374, 433, 612, 954
AgsI TTSAA 5 cut(s) 47, 103, 229, 280, 806
AjiI CACGTC 1 cut(s) 655
AleI CACNNNNGTG 2 cut(s) 265, 1117
AluBI AGCT 3 cut(s) 52, 194, 878
AluI AGCT 3 cut(s) 52, 194, 878
Alw26I GTCTC 4 cut(s) 115, 596, 747, 1007
AlwI GGATC 2 cut(s) 88, 500
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 4 cut(s) 340, 684, 850, 956
ApeKI GCWGC 3 cut(s) 574, 832, 936
ApoI RAATTY 1 cut(s) 806
Asp700I GAANNNNTTC 1 cut(s) 51
AspA2I CCTAGG 1 cut(s) 263
AspLEI GCGC 2 cut(s) 719, 737
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 143
AvrII CCTAGG 1 cut(s) 263
BanI GGYRCC 1 cut(s) 716
BanII GRGCYC 1 cut(s) 439
BbvI GCAGC 3 cut(s) 586, 819, 923
BccI CCATC 2 cut(s) 242, 1048
BceAI ACGGC 3 cut(s) 704, 748, 943
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 4 cut(s) 115, 596, 747, 1007
BfaI CTAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 720
BisI GCNGC 3 cut(s) 575, 833, 937
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 3 cut(s) 576, 834, 938
Bme1390I CCNGG 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 655
BmiI GGNNCC 4 cut(s) 78, 630, 718, 788
BmrFI CCNGG 1 cut(s) 434
BpmI CTGGAG 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 644
BpuMI CCSGG 1 cut(s) 434
BsaHI GRCGYC 2 cut(s) 717, 1044
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 263, 894
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 374, 433, 612, 954
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 2 cut(s) 343, 1024
BseDI CCNNGG 2 cut(s) 263, 894
BseGI GGATG 2 cut(s) 234, 394
BseLI CCNNNNNNNGG 5 cut(s) 120, 374, 433, 612, 954
BseMI GCAATG 2 cut(s) 343, 1024
BseMII CTCAG 3 cut(s) 204, 591, 942
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 586, 819, 923
BsgI GTGCAG 1 cut(s) 818
BshFI GGCC 4 cut(s) 342, 686, 852, 958
BshNI GGYRCC 1 cut(s) 716
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 433, 606
BslFI GGGAC 3 cut(s) 482, 875, 1076
BslI CCNNNNNNNGG 5 cut(s) 120, 374, 433, 612, 954
BsmAI GTCTC 4 cut(s) 115, 596, 747, 1007
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 3 cut(s) 482, 875, 1076
BsnI GGCC 4 cut(s) 342, 686, 852, 958
Bso31I GGTCTC 1 cut(s) 596
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 3 cut(s) 93, 505, 1096
BspACI CCGC 1 cut(s) 990
BspANI GGCC 4 cut(s) 342, 686, 852, 958
BspCNI CTCAG 3 cut(s) 203, 592, 943
BspLI GGNNCC 4 cut(s) 78, 630, 718, 788
BspPI GGATC 2 cut(s) 88, 500
BspQI GCTCTTC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 716
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 2 cut(s) 343, 1024
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 263, 894
BssMI GATC 3 cut(s) 93, 505, 1096
BssNAI GTATAC 1 cut(s) 724
BssNI GRCGYC 2 cut(s) 717, 1044
BssT1I CCWWGG 2 cut(s) 263, 894
Bst1107I GTATAC 1 cut(s) 724
Bst4CI ACNGT 2 cut(s) 9, 158
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 2 cut(s) 717, 1044
BstC8I GCNNGC 3 cut(s) 126, 684, 1076
BstDEI CTNAG 5 cut(s) 56, 190, 600, 951, 969
BstF5I GGATG 2 cut(s) 234, 394
BstH2I RGCGCY 1 cut(s) 720
BstHHI GCGC 2 cut(s) 719, 737
BstKTI GATC 3 cut(s) 96, 508, 1099
BstMAI GTCTC 4 cut(s) 115, 596, 747, 1007
BstMBI GATC 3 cut(s) 93, 505, 1096
BstSCI CCNGG 1 cut(s) 432
BstV1I GCAGC 3 cut(s) 586, 819, 923
BstZ17I GTATAC 1 cut(s) 724
BsuRI GGCC 4 cut(s) 342, 686, 852, 958
BtgZI GCGATG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 2 cut(s) 234, 394
BtsIMutI CAGTG 3 cut(s) 118, 914, 948
Cac8I GCNNGC 3 cut(s) 126, 684, 1076
CfoI GCGC 2 cut(s) 719, 737
CseI GACGC 2 cut(s) 97, 608
Csp6I GTAC 2 cut(s) 485, 1003
CviAII CATG 5 cut(s) 251, 668, 688, 1048, 1091
CviQI GTAC 2 cut(s) 485, 1003
DdeI CTNAG 5 cut(s) 56, 190, 600, 951, 969
DinI GGCGCC 1 cut(s) 718
DpnI GATC 3 cut(s) 95, 507, 1098
DpnII GATC 3 cut(s) 93, 505, 1096
DraIII CACNNNGTG 1 cut(s) 954
EaeI YGGCCR 1 cut(s) 956
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 263, 894
Eco24I GRGCYC 1 cut(s) 439
Eco31I GGTCTC 1 cut(s) 596
Eco57I CTGAAG 4 cut(s) 6, 311, 685, 938
Eco88I CYCGRG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 806
EcoT14I CCWWGG 2 cut(s) 263, 894
EcoT38I GRGCYC 1 cut(s) 439
EgeI GGCGCC 1 cut(s) 718
EheI GGCGCC 1 cut(s) 718
ErhI CCWWGG 2 cut(s) 263, 894
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 5 cut(s) 254, 671, 691, 1051, 1094
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 3 cut(s) 482, 875, 1076
FatI CATG 5 cut(s) 250, 667, 687, 1047, 1090
FblI GTMKAC 1 cut(s) 723
Fnu4HI GCNGC 3 cut(s) 575, 833, 937
FokI GGATG 2 cut(s) 221, 381
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 3 cut(s) 575, 833, 937
FspBI CTAG 1 cut(s) 264
GlaI GCGC 2 cut(s) 718, 736
GluI GCNGC 3 cut(s) 575, 833, 937
GsuI CTGGAG 1 cut(s) 858
HaeII RGCGCY 1 cut(s) 720
HaeIII GGCC 4 cut(s) 342, 686, 852, 958
HapII CCGG 2 cut(s) 433, 606
HgaI GACGC 2 cut(s) 97, 608
HhaI GCGC 2 cut(s) 719, 737
Hin1I GRCGYC 2 cut(s) 717, 1044
Hin1II CATG 5 cut(s) 254, 671, 691, 1051, 1094
Hin6I GCGC 2 cut(s) 717, 735
HinP1I GCGC 2 cut(s) 717, 735
HinfI GANTC 4 cut(s) 64, 308, 322, 943
HpaII CCGG 2 cut(s) 433, 606
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 6 cut(s) 63, 93, 139, 170, 601, 652
Hpy188III TCNNGA 3 cut(s) 623, 703, 904
Hpy8I GTNNAC 1 cut(s) 724
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 6 cut(s) 235, 286, 519, 657, 707, 913
HpyCH4III ACNGT 2 cut(s) 9, 158
HpyCH4IV ACGT 2 cut(s) 654, 1044
HpyCH4V TGCA 8 cut(s) 270, 336, 729, 775, 835, 939, 1029, 1051
HpyF3I CTNAG 5 cut(s) 56, 190, 600, 951, 969
HpySE526I ACGT 2 cut(s) 654, 1044
Hsp92I GRCGYC 2 cut(s) 717, 1044
Hsp92II CATG 5 cut(s) 254, 671, 691, 1051, 1094
HspAI GCGC 2 cut(s) 717, 735
KasI GGCGCC 1 cut(s) 716
Kzo9I GATC 3 cut(s) 93, 505, 1096
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 877
Lsp1109I GCAGC 3 cut(s) 586, 819, 923
MaeI CTAG 1 cut(s) 264
MaeII ACGT 2 cut(s) 654, 1044
MaeIII GTNAC 2 cut(s) 152, 158
MalI GATC 3 cut(s) 95, 507, 1098
MboI GATC 3 cut(s) 93, 505, 1096
MboII GAAGA 7 cut(s) 12, 59, 190, 230, 317, 473, 628
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 5 cut(s) 292, 428, 450, 806, 1037
Mly113I GGCGCC 1 cut(s) 717
MmeI TCCRAC 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 51
MseI TTAA 1 cut(s) 1101
MslI CAYNNNNRTG 3 cut(s) 265, 1052, 1117
MspI CCGG 2 cut(s) 433, 606
MspR9I CCNGG 1 cut(s) 434
MunI CAATTG 1 cut(s) 450
NarI GGCGCC 1 cut(s) 717
NciI CCSGG 1 cut(s) 434
NdeII GATC 3 cut(s) 93, 505, 1096
NlaIII CATG 5 cut(s) 254, 671, 691, 1051, 1094
NlaIV GGNNCC 4 cut(s) 78, 630, 718, 788
NmuCI GTSAC 2 cut(s) 152, 158
OliI CACNNNNGTG 2 cut(s) 265, 1117
PciSI GCTCTTC 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 4 cut(s) 64, 308, 322, 943
PflMI CCANNNNNTGG 2 cut(s) 120, 954
PkrI GCNGC 3 cut(s) 576, 834, 938
PluTI GGCGCC 1 cut(s) 720
PsiI TTATAA 2 cut(s) 564, 1020
PspN4I GGNNCC 4 cut(s) 78, 630, 718, 788
RsaI GTAC 2 cut(s) 486, 1004
RsaNI GTAC 2 cut(s) 485, 1003
RseI CAYNNNNRTG 3 cut(s) 265, 1052, 1117
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 1101
SatI GCNGC 3 cut(s) 575, 833, 937
Sau3AI GATC 3 cut(s) 93, 505, 1096
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 1 cut(s) 439
SfoI GGCGCC 1 cut(s) 718
SmiMI CAYNNNNRTG 3 cut(s) 265, 1052, 1117
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 5 cut(s) 292, 428, 450, 806, 1037
SsiI CCGC 1 cut(s) 990
SspDI GGCGCC 1 cut(s) 716
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 432
StyI CCWWGG 2 cut(s) 263, 894
TaaI ACNGT 2 cut(s) 9, 158
TaiI ACGT 2 cut(s) 657, 1047
TaqI TCGA 1 cut(s) 843
TasI AATT 5 cut(s) 292, 428, 450, 806, 1037
TatI WGTACW 1 cut(s) 1002
TfiI GAWTC 4 cut(s) 64, 308, 322, 943
Tru1I TTAA 1 cut(s) 1101
Tru9I TTAA 1 cut(s) 1101
TscAI CASTG 3 cut(s) 125, 921, 955
TseFI GTSAC 2 cut(s) 152, 158
TseI GCWGC 3 cut(s) 574, 832, 936
Tsp45I GTSAC 2 cut(s) 152, 158
TspDTI ATGAA 7 cut(s) 231, 267, 321, 585, 664, 704, 731
TspGWI ACGGA 4 cut(s) 86, 140, 227, 286
TspRI CASTG 3 cut(s) 125, 921, 955
Van91I CCANNNNNTGG 2 cut(s) 120, 954
XapI RAATTY 1 cut(s) 806
XmaJI CCTAGG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 723
XmnI GAANNNNTTC 1 cut(s) 51
XspI CTAG 1 cut(s) 264
ZraI GACGTC 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.