FvH4_4g01430

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000449
Physical Location & Seq
Reverse (-)
1310519 .. 1311777
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01430.t1

Sequence Viewer

Length: 996 bp
ATGTCTGATGAAGAAACGAAACATGATCCGGTATATGTTGTCAATCCCACCACCAACCAGTTCCGGGCTCTTTCTTCTCCCAGCGTCATGGAAGACATGGATGACGGTATTGTTGTACGCTATGCTCTGGCTTTTAATCCTTCGAAATCGCCACATTACAAGGTAGTCTGCGTGACTAACTTGAGTGATGATTATTATGATGAGGGGCAGCACTTGATAGACATATACTCATCCGAGAGTGGAGAGTGGAAGCATCTCGAGGCTCTTTACTTCCCCAGCCCCCAGGACGGGGGAAGACACTTTGACTACAGGAGCAGGGAAGGGGCTGTATACTGCAACGGCATAGTTCATTGGATCAGAAATAGAATGGAAGTTGTGTTGAGTTGGGGAAGGACAAAGACAAGCGATGGTCCATGGTCCAGAGATGAATGGAAAAAAGATGAGTGTGATGTGGTGCACTACTTTGACATAGGTGAAGAACGATTTCGACTTGCCCCTGTGGCTCCTCCTGTTGCCTTGTCTGTCCGAAACATTAGCTTGGAGGACTTTCCCACTAGTTGGCCGAGTTTGGCTCAGAGATATTTTGTCGAGTGCCGCGGTCGTTTGTATTTGATTGAGATTTTTGAGCATTGCAAGACTCGATTTGAGGTCATGGAGATGGAAAGGAACTACTCTGGCTGGTTTGCCAAGTATCATGTTGATCTTAATCCGCTAGTCGCAGCTCTTCCTGGACTGGATTGGAATGCTTTAGCTGTCTTGGGCCTTTATCAAGAGGATGAGACAGATAATGGGGTTGAGGATACTTCAACTCATCTTTTGTTGCAGCTGCCTGGTAAGATCATATCCTATAATCTGAGGGATGAGACCTTCAAGACATCTGTTGAGTTAGGCAATAAGGAACTTTTTCAAGCTTTAGGTGACTATGATCATATTCAAGAGGATGTTGATTATCATCATATCAAGAGGATGTTACTTTTCCTTACATGGAGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

332

Amino Acids

38.53

Weight (kDa)

4.97

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 8 - 163 7.8e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 558
AccI GTMKAC 1 cut(s) 330
AccII CGCG 1 cut(s) 597
AciI CCGC 3 cut(s) 595, 597, 710
AclWI GGATC 2 cut(s) 20, 362
AcoI YGGCCR 1 cut(s) 560
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 5 cut(s) 64, 287, 288, 289, 558
AgsI TTSAA 4 cut(s) 807, 871, 908, 935
AhlI ACTAGT 1 cut(s) 554
AjnI CCWGG 3 cut(s) 282, 727, 829
AluBI AGCT 5 cut(s) 537, 722, 752, 826, 911
AluI AGCT 5 cut(s) 537, 722, 752, 826, 911
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 3 cut(s) 773, 857, 982
Alw44I GTGCAC 1 cut(s) 455
AlwI GGATC 2 cut(s) 20, 362
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 2 cut(s) 560, 760
ApaLI GTGCAC 1 cut(s) 455
ApeKI GCWGC 4 cut(s) 208, 719, 823, 826
Asp700I GAANNNNTTC 2 cut(s) 483, 903
AspS9I GGNCC 3 cut(s) 410, 417, 760
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 485, 929
AsuII TTCGAA 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 2 cut(s) 410, 417
BaeGI GKGCMC 1 cut(s) 459
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 2 cut(s) 99, 301
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 4 cut(s) 220, 731, 813, 835
BccI CCATC 2 cut(s) 401, 652
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 3 cut(s) 284, 729, 831
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 1 cut(s) 925
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 773, 857, 982
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 2 cut(s) 555, 713
BfmI CTRYAG 1 cut(s) 307
BfuI GTATCC 1 cut(s) 793
BglI GCCNNNNNGGC 1 cut(s) 500
BisI GCNGC 5 cut(s) 209, 595, 720, 824, 827
BlsI GCNGC 5 cut(s) 210, 596, 721, 825, 828
Bme1390I CCNGG 4 cut(s) 65, 284, 729, 831
Bme18I GGWCC 2 cut(s) 410, 417
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 3 cut(s) 410, 417, 760
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 4 cut(s) 65, 284, 729, 831
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 2 cut(s) 99, 301
BplI GAGNNNNNCTC 2 cut(s) 556, 588
Bpu14I TTCGAA 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 65
BsaBI GATNNNNATC 2 cut(s) 705, 951
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 3 cut(s) 282, 413, 595
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 287, 288, 289, 558
Bse1I ACTGG 2 cut(s) 58, 738
Bse3DI GCAATG 1 cut(s) 628
Bse8I GATNNNNATC 2 cut(s) 705, 951
BseBI CCWGG 3 cut(s) 284, 729, 831
BseDI CCNNGG 3 cut(s) 282, 413, 595
BseGI GGATG 6 cut(s) 106, 230, 781, 865, 946, 972
BseJI GATNNNNATC 2 cut(s) 705, 951
BseLI CCNNNNNNNGG 5 cut(s) 64, 287, 288, 289, 558
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 2 cut(s) 587, 845
BseNI ACTGG 2 cut(s) 58, 738
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 459
BseXI GCAGC 4 cut(s) 220, 731, 813, 835
BseYI CCCAGC 2 cut(s) 80, 275
Bsh1236I CGCG 1 cut(s) 597
Bsh1285I CGRYCG 1 cut(s) 601
BshFI GGCC 2 cut(s) 562, 762
BsiEI CGRYCG 1 cut(s) 601
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 2 cut(s) 29, 64
BslI CCNNNNNNNGG 5 cut(s) 64, 287, 288, 289, 558
BsmAI GTCTC 3 cut(s) 773, 857, 982
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 2 cut(s) 562, 762
Bso31I GGTCTC 1 cut(s) 857
BsoBI CYCGRG 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 70, 459
Bsp143I GATC 5 cut(s) 25, 354, 700, 837, 925
Bsp19I CCATGG 1 cut(s) 413
BspACI CCGC 3 cut(s) 595, 597, 710
BspANI GGCC 2 cut(s) 562, 762
BspCNI CTCAG 2 cut(s) 586, 846
BspFNI CGCG 1 cut(s) 597
BspLI GGNNCC 1 cut(s) 504
BspPI GGATC 2 cut(s) 20, 362
BspQI GCTCTTC 1 cut(s) 729
BspT104I TTCGAA 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 857
BsrDI GCAATG 1 cut(s) 628
BsrI ACTGG 2 cut(s) 58, 738
BssECI CCNNGG 3 cut(s) 282, 413, 595
BssMI GATC 5 cut(s) 25, 354, 700, 837, 925
BssNAI GTATAC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 413
Bst1107I GTATAC 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 284, 729, 831
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 729
BstBI TTCGAA 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 573, 854
BstDSI CCRYGG 2 cut(s) 413, 595
BstF5I GGATG 6 cut(s) 106, 230, 781, 865, 946, 972
BstFNI CGCG 1 cut(s) 597
BstKTI GATC 5 cut(s) 28, 357, 703, 840, 928
BstMAI GTCTC 3 cut(s) 773, 857, 982
BstMBI GATC 5 cut(s) 25, 354, 700, 837, 925
BstMCI CGRYCG 1 cut(s) 601
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 3 cut(s) 284, 729, 831
BstSCI CCNGG 4 cut(s) 63, 282, 727, 829
BstSFI CTRYAG 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 459
BstUI CGCG 1 cut(s) 597
BstV1I GCAGC 4 cut(s) 220, 731, 813, 835
BstV2I GAAGAC 2 cut(s) 99, 301
BstXI CCANNNNNNTGG 1 cut(s) 88
BstZ17I GTATAC 1 cut(s) 331
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 2 cut(s) 562, 762
BtgI CCRYGG 2 cut(s) 413, 595
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 6 cut(s) 106, 230, 781, 865, 946, 972
Cfr13I GGNCC 3 cut(s) 410, 417, 760
Cfr42I CCGCGG 1 cut(s) 598
CseI GACGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 116
CviAII CATG 7 cut(s) 23, 88, 97, 414, 652, 695, 984
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 573, 854
DpnI GATC 5 cut(s) 27, 356, 702, 839, 927
DpnII GATC 5 cut(s) 25, 354, 700, 837, 925
EaeI YGGCCR 1 cut(s) 560
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 857
Eco47I GGWCC 2 cut(s) 410, 417
Eco88I CYCGRG 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 282, 727, 829
EcoT14I CCWWGG 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 413
FaeI CATG 7 cut(s) 26, 91, 100, 417, 655, 698, 987
FatI CATG 7 cut(s) 22, 87, 96, 413, 651, 694, 983
FbaI TGATCA 1 cut(s) 925
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 5 cut(s) 209, 595, 720, 824, 827
FokI GGATG 6 cut(s) 113, 217, 788, 872, 953, 979
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 5 cut(s) 209, 595, 720, 824, 827
FspBI CTAG 2 cut(s) 555, 713
GluI GCNGC 5 cut(s) 209, 595, 720, 824, 827
GsaI CCCAGC 2 cut(s) 84, 279
HaeIII GGCC 2 cut(s) 562, 762
HapII CCGG 2 cut(s) 29, 64
HgaI GACGC 1 cut(s) 73
Hin1II CATG 7 cut(s) 26, 91, 100, 417, 655, 698, 987
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 1 cut(s) 637
HpaII CCGG 2 cut(s) 29, 64
HphI GGTGA 2 cut(s) 485, 929
Hpy166II GTNNAC 2 cut(s) 331, 457
Hpy188I TCNGA 6 cut(s) 7, 235, 359, 527, 576, 855
Hpy188III TCNNGA 6 cut(s) 257, 420, 770, 871, 935, 961
Hpy8I GTNNAC 2 cut(s) 331, 457
HpyAV CCTTC 4 cut(s) 150, 314, 384, 877
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 4 cut(s) 336, 457, 633, 823
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 573, 854
Hsp92II CATG 7 cut(s) 26, 91, 100, 417, 655, 698, 987
Ksp22I TGATCA 1 cut(s) 925
KspI CCGCGG 1 cut(s) 598
Kzo9I GATC 5 cut(s) 25, 354, 700, 837, 925
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 2 cut(s) 312, 508
Lsp1109I GCAGC 4 cut(s) 220, 731, 813, 835
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 555, 713
MaeIII GTNAC 3 cut(s) 172, 917, 969
MalI GATC 5 cut(s) 27, 356, 702, 839, 927
MboI GATC 5 cut(s) 25, 354, 700, 837, 925
MboII GAAGA 6 cut(s) 23, 66, 104, 306, 488, 716
MhlI GDGCHC 2 cut(s) 70, 459
MlyI GAGTC 1 cut(s) 631
MroXI GAANNNNTTC 2 cut(s) 483, 903
MseI TTAA 3 cut(s) 135, 705, 994
MslI CAYNNNNRTG 1 cut(s) 656
MspA1I CMGCKG 2 cut(s) 597, 826
MspI CCGG 2 cut(s) 29, 64
MspR9I CCNGG 4 cut(s) 65, 284, 729, 831
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 3 cut(s) 284, 729, 831
MvnI CGCG 1 cut(s) 597
MwoI GCNNNNNNNGC 1 cut(s) 500
NciI CCSGG 1 cut(s) 65
NcoI CCATGG 1 cut(s) 413
NdeII GATC 5 cut(s) 25, 354, 700, 837, 925
NlaIII CATG 7 cut(s) 26, 91, 100, 417, 655, 698, 987
NlaIV GGNNCC 1 cut(s) 504
NmeAIII GCCGAG 1 cut(s) 588
NmuCI GTSAC 2 cut(s) 172, 917
NspV TTCGAA 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 729
PctI GAATGC 1 cut(s) 748
PdmI GAANNNNTTC 2 cut(s) 483, 903
PflMI CCANNNNNTGG 1 cut(s) 558
PfoI TCCNGGA 1 cut(s) 727
PkrI GCNGC 5 cut(s) 210, 596, 721, 825, 828
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
Psp6I CCWGG 3 cut(s) 282, 727, 829
PspFI CCCAGC 2 cut(s) 80, 275
PspGI CCWGG 3 cut(s) 282, 727, 829
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 3 cut(s) 410, 417, 760
PvuII CAGCTG 1 cut(s) 826
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 656
SacII CCGCGG 1 cut(s) 598
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 3 cut(s) 135, 705, 994
SatI GCNGC 5 cut(s) 209, 595, 720, 824, 827
Sau3AI GATC 5 cut(s) 25, 354, 700, 837, 925
Sau96I GGNCC 3 cut(s) 410, 417, 760
SchI GAGTC 1 cut(s) 631
ScrFI CCNGG 4 cut(s) 65, 284, 729, 831
SduI GDGCHC 2 cut(s) 70, 459
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 307
Sfr274I CTCGAG 1 cut(s) 257
Sfr303I CCGCGG 1 cut(s) 598
SfuI TTCGAA 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 598
SinI GGWCC 2 cut(s) 410, 417
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 2 cut(s) 181, 257
SmoI CTYRAG 2 cut(s) 181, 257
SpeI ACTAGT 1 cut(s) 554
SsiI CCGC 3 cut(s) 595, 597, 710
SspMI CTAG 2 cut(s) 555, 713
StyD4I CCNGG 4 cut(s) 63, 282, 727, 829
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 5 cut(s) 143, 258, 487, 588, 640
TauI GCSGC 1 cut(s) 597
Tru1I TTAA 3 cut(s) 135, 705, 994
Tru9I TTAA 3 cut(s) 135, 705, 994
TseFI GTSAC 2 cut(s) 172, 917
TseI GCWGC 4 cut(s) 208, 719, 823, 826
Tsp45I GTSAC 2 cut(s) 172, 917
TspDTI ATGAA 3 cut(s) 24, 338, 441
Van91I CCANNNNNTGG 1 cut(s) 558
VneI GTGCAC 1 cut(s) 455
VpaK11BI GGWCC 2 cut(s) 410, 417
XhoI CTCGAG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 330
XmnI GAANNNNTTC 2 cut(s) 483, 903
XspI CTAG 2 cut(s) 555, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.