Rh4DG014800

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000449
Physical Location & Seq
Reverse (-)
2311845 .. 2312765
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG014800.1

Sequence Viewer

Length: 921 bp
ATGTCATCGTCGGCAGAAACGGTAGCGAACATCGAAGGGCTCCTTAAGCAGATCCTCATATCGGTTCCGGCTCTATCTCTGATCCGCTTCAAGTGCGTCTCCAAGCACTGGCTCTCTCTCATTTCCGACCCCGACTTCTGTCGCCGCCACACTCTCCGAAATCCTAACCCCAAAATCTCAGCTTTCTTCTCTTCCCAAACCAATGAAGACGCCACCATCAACTCCATCACTCTCGGCAGCCCATCCGGTAATCCCTTCAAAACTCTCGCCAATTCCACCTCCGCGTTGAGGATTCTCCAGTCCTGCAATGGCCTCTTCCTCTGCTATGTCGAATTCCCCGGAGAAGAAGAAGAAAGAAACTATCCTCCTGTGTATGTTGTCAATCCCACCACCAACAAATTCCGCGCTCTTTCTGCTCCAAGCCTTGCGAAGAAGGAGGAAACGTATATGTTTGTGAGGTATGGTTTGGCTTTCGACCCTTTGAAATCGCCTCATTACACTGTGGTGTGTGTCAGTCACGACATTCTCCGTGGCAAGCGCCACAGCATAGAGATATATTCGTCGGAGACCGGAACTTGGGTGAAGCGTTTCAAGGCTCCTTTCTTCCCCAGCCCTTCGGACGAGGGCAGGCACATTGATACGCGCAATATGCCTATGCATTTTGATGAGAGGAGCAGGGAAGGGGCAGTGTATTGCAACGGCGCAATTCATTGGATAAGAAACAGATGCGAAGCGAGCCTGCCATTCTGCTGGGTGAGAATTGGTGTGGTCGAAACAGTTGGATTCGAAAGAAGTGAATTGGATGTGTTGCACTACTATGACATAGGTGAAGAAAAGTCTGCGGCTCGCTGCTGCTACTCCTCCAGTTCCTTTGGTTGTGAAAAACATTCCGTTGGAGAAAGAACAAAACTTTCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

306

Amino Acids

34.59

Weight (kDa)

8.24

Isoelectric Point (pI)

62.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 48 6.7e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 108
AccII CGCG 3 cut(s) 284, 405, 643
AciI CCGC 5 cut(s) 85, 145, 282, 403, 842
AclWI GGATC 2 cut(s) 46, 76
AcsI RAATTY 2 cut(s) 332, 398
AcyI GRCGYC 1 cut(s) 210
AfiI CCNNNNNNNGG 4 cut(s) 61, 108, 288, 576
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 91, 259, 484, 592
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 103, 560
AlwI GGATC 2 cut(s) 46, 76
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 3 cut(s) 237, 849, 852
ApoI RAATTY 2 cut(s) 332, 398
Asp700I GAANNNNTTC 1 cut(s) 587
AspLEI GCGC 4 cut(s) 407, 540, 645, 704
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 3 cut(s) 592, 766, 839
AsuII TTCGAA 1 cut(s) 786
BanII GRGCYC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 3 cut(s) 249, 836, 839
BccI CCATC 3 cut(s) 224, 233, 250
BceAI ACGGC 1 cut(s) 715
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 2 cut(s) 103, 560
BfoI RGCGCY 1 cut(s) 541
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 5 cut(s) 145, 238, 843, 850, 853
BlsI GCNGC 5 cut(s) 146, 239, 844, 851, 854
Bme1390I CCNGG 1 cut(s) 339
BmiI GGNNCC 3 cut(s) 41, 66, 597
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 1 cut(s) 716
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 2 cut(s) 281, 847
Bpu14I TTCGAA 1 cut(s) 786
BpuMI CCSGG 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 2 cut(s) 337, 529
BsaWI WCCGGW 2 cut(s) 245, 569
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 108, 288, 576
Bse1I ACTGG 3 cut(s) 113, 298, 864
Bse3DI GCAATG 1 cut(s) 313
BseDI CCNNGG 2 cut(s) 337, 529
BseGI GGATG 2 cut(s) 242, 808
BseLI CCNNNNNNNGG 4 cut(s) 61, 108, 288, 576
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 3 cut(s) 113, 298, 864
BseRI GAGGAG 2 cut(s) 685, 850
BseXI GCAGC 3 cut(s) 249, 836, 839
BseYI CCCAGC 2 cut(s) 608, 750
Bsh1236I CGCG 3 cut(s) 284, 405, 643
BshFI GGCC 1 cut(s) 312
BsiSI CCGG 4 cut(s) 68, 246, 339, 570
BslI CCNNNNNNNGG 4 cut(s) 61, 108, 288, 576
BsmAI GTCTC 2 cut(s) 103, 560
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 1 cut(s) 312
Bso31I GGTCTC 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 786
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 51, 81
BspACI CCGC 5 cut(s) 85, 145, 282, 403, 842
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 3 cut(s) 284, 405, 643
BspLI GGNNCC 3 cut(s) 41, 66, 597
BspPI GGATC 2 cut(s) 46, 76
BspT104I TTCGAA 1 cut(s) 786
BspTI CTTAAG 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 313
BsrI ACTGG 3 cut(s) 113, 298, 864
BssECI CCNNGG 2 cut(s) 337, 529
BssMI GATC 2 cut(s) 51, 81
BssNI GRCGYC 1 cut(s) 210
Bst4CI ACNGT 3 cut(s) 22, 502, 778
Bst6I CTCTTC 2 cut(s) 196, 320
BstACI GRCGYC 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 786
BstC8I GCNNGC 5 cut(s) 536, 629, 736, 740, 847
BstDEI CTNAG 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 529
BstF5I GGATG 2 cut(s) 242, 808
BstFNI CGCG 3 cut(s) 284, 405, 643
BstH2I RGCGCY 1 cut(s) 541
BstHHI GCGC 4 cut(s) 407, 540, 645, 704
BstKTI GATC 2 cut(s) 54, 84
BstMAI GTCTC 2 cut(s) 103, 560
BstMBI GATC 2 cut(s) 51, 81
BstMWI GCNNNNNNNGC 5 cut(s) 46, 93, 413, 649, 735
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 337
BstUI CGCG 3 cut(s) 284, 405, 643
BstV1I GCAGC 3 cut(s) 249, 836, 839
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 750
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 529
BtsCI GGATG 2 cut(s) 242, 808
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 3 cut(s) 106, 498, 693
Cac8I GCNNGC 5 cut(s) 536, 629, 736, 740, 847
CfoI GCGC 4 cut(s) 407, 540, 645, 704
CseI GACGC 2 cut(s) 85, 218
DdeI CTNAG 1 cut(s) 178
DpnI GATC 2 cut(s) 53, 83
DpnII GATC 2 cut(s) 51, 81
Eam1104I CTCTTC 2 cut(s) 196, 320
EarI CTCTTC 2 cut(s) 196, 320
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 103
FalI AAGNNNNNCTT 2 cut(s) 27, 59
Fnu4HI GCNGC 5 cut(s) 145, 238, 843, 850, 853
FokI GGATG 2 cut(s) 229, 815
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 5 cut(s) 145, 238, 843, 850, 853
GlaI GCGC 4 cut(s) 406, 539, 644, 703
GluI GCNGC 5 cut(s) 145, 238, 843, 850, 853
GsaI CCCAGC 2 cut(s) 612, 754
GsuI CTGGAG 2 cut(s) 281, 847
HaeII RGCGCY 1 cut(s) 541
HaeIII GGCC 1 cut(s) 312
HapII CCGG 4 cut(s) 68, 246, 339, 570
HgaI GACGC 2 cut(s) 85, 218
HhaI GCGC 4 cut(s) 407, 540, 645, 704
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 4 cut(s) 405, 538, 643, 702
HinP1I GCGC 4 cut(s) 405, 538, 643, 702
HinfI GANTC 2 cut(s) 292, 783
HpaII CCGG 4 cut(s) 68, 246, 339, 570
HphI GGTGA 3 cut(s) 592, 766, 839
Hpy188I TCNGA 5 cut(s) 81, 127, 158, 565, 619
Hpy188III TCNNGA 1 cut(s) 518
Hpy99I CGWCG 2 cut(s) 13, 565
HpyAV CCTTC 5 cut(s) 29, 265, 427, 624, 674
HpyCH4III ACNGT 3 cut(s) 22, 502, 778
HpyCH4IV ACGT 1 cut(s) 443
HpyCH4V TGCA 4 cut(s) 306, 658, 696, 811
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 93, 413, 649, 735
HpyF3I CTNAG 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 443
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 4 cut(s) 405, 538, 643, 702
Kzo9I GATC 2 cut(s) 51, 81
LmnI GCTCC 4 cut(s) 45, 421, 601, 672
Lsp1109I GCAGC 3 cut(s) 249, 836, 839
LweI GCATC 1 cut(s) 716
MaeII ACGT 1 cut(s) 443
MaeIII GTNAC 1 cut(s) 515
MalI GATC 2 cut(s) 53, 83
MboI GATC 2 cut(s) 51, 81
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 6 cut(s) 271, 332, 398, 705, 759, 797
MmeI TCCRAC 4 cut(s) 150, 543, 760, 874
Mph1103I ATGCAT 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 3 cut(s) 503, 663, 816
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 4 cut(s) 68, 246, 339, 570
MspR9I CCNGG 1 cut(s) 339
MvnI CGCG 3 cut(s) 284, 405, 643
MwoI GCNNNNNNNGC 5 cut(s) 46, 93, 413, 649, 735
NciI CCSGG 1 cut(s) 339
NdeII GATC 2 cut(s) 51, 81
NlaIV GGNNCC 3 cut(s) 41, 66, 597
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 515
NsiI ATGCAT 1 cut(s) 660
NspV TTCGAA 1 cut(s) 786
OliI CACNNNNGTG 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 2 cut(s) 292, 783
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 5 cut(s) 146, 239, 844, 851, 854
PshAI GACNNNNGTC 1 cut(s) 138
PspFI CCCAGC 2 cut(s) 608, 750
PspN4I GGNNCC 3 cut(s) 41, 66, 597
PsuI RGATCY 1 cut(s) 51
RseI CAYNNNNRTG 3 cut(s) 503, 663, 816
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 5 cut(s) 145, 238, 843, 850, 853
Sau3AI GATC 2 cut(s) 51, 81
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 184, 281, 446, 461, 829
SfaNI GCATC 1 cut(s) 716
SfuI TTCGAA 1 cut(s) 786
SmiMI CAYNNNNRTG 3 cut(s) 503, 663, 816
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 6 cut(s) 271, 332, 398, 705, 759, 797
SsiI CCGC 5 cut(s) 85, 145, 282, 403, 842
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 3 cut(s) 22, 502, 778
TaiI ACGT 1 cut(s) 446
TaqI TCGA 5 cut(s) 33, 330, 474, 771, 786
TasI AATT 6 cut(s) 271, 332, 398, 705, 759, 797
TauI GCSGC 2 cut(s) 147, 845
TfiI GAWTC 2 cut(s) 292, 783
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 3 cut(s) 113, 505, 693
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 3 cut(s) 237, 849, 852
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 219, 698
TspGWI ACGGA 2 cut(s) 518, 880
TspRI CASTG 3 cut(s) 113, 505, 693
Van91I CCANNNNNTGG 1 cut(s) 108
Vha464I CTTAAG 1 cut(s) 44
XapI RAATTY 2 cut(s) 332, 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.