Rmu_sc0002509.1_g000012

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002509.1
OG0000449
Physical Location & Seq
Forward (+)
44918 .. 45247
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002509.1_g000012.1.cds

Sequence Viewer

Length: 330 bp
atggagatggagagagactactctggctggcttgtcaagtatcatgttgatcttaatccggtagtcgcagctgttcctggacaggattggaatgcttttgttgtcttgtgcctttttcaaggggaggaaacagataatggggttgaggattcttccgctgatcttttattgcacatgcctggtaaggtcatatcttataatatttggaataagagcttcaagacatctgttgagttggccaataatgaactttttctagctttacgtgataatcgtcgtattcgagaggatgttatttttccttacacggagactctagcttgtttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

109

Amino Acids

12.5

Weight (kDa)

4.54

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AciI CCGC 1 cut(s) 156
AcoI YGGCCR 1 cut(s) 237
AgsI TTSAA 2 cut(s) 119, 220
AjnI CCWGG 2 cut(s) 76, 178
AluBI AGCT 4 cut(s) 71, 216, 260, 320
AluI AGCT 4 cut(s) 71, 216, 260, 320
Alw26I GTCTC 2 cut(s) 9, 305
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 252
BalI TGGCCA 1 cut(s) 239
BbvI GCAGC 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 78, 180
BcoDI GTCTC 2 cut(s) 9, 305
BfaI CTAG 2 cut(s) 257, 317
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 78, 180
BmrFI CCNGG 2 cut(s) 78, 180
BsaAI YACGTR 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 2 cut(s) 78, 180
BseGI GGATG 1 cut(s) 295
BseJI GATNNNNATC 1 cut(s) 54
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 9, 305
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 49, 160
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 239
BssMI GATC 2 cut(s) 49, 160
Bst2UI CCWGG 2 cut(s) 78, 180
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 29
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 2 cut(s) 52, 163
BstMAI GTCTC 2 cut(s) 9, 305
BstMBI GATC 2 cut(s) 49, 160
BstNI CCWGG 2 cut(s) 78, 180
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 76, 178
BstV1I GCAGC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 29
CviAII CATG 2 cut(s) 44, 175
CviJI RGCY 7 cut(s) 27, 31, 71, 216, 239, 260, 320
CviKI_1 RGCY 7 cut(s) 27, 31, 71, 216, 239, 260, 320
DpnI GATC 2 cut(s) 51, 162
DpnII GATC 2 cut(s) 49, 160
EaeI YGGCCR 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 76, 178
FaeI CATG 2 cut(s) 47, 178
FaiI YATR 4 cut(s) 45, 176, 191, 198
FatI CATG 2 cut(s) 43, 174
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 257, 317
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 59
Hin1II CATG 2 cut(s) 47, 178
HinfI GANTC 2 cut(s) 149, 313
HpaII CCGG 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 220, 284
Hpy99I CGWCG 1 cut(s) 279
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 172
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 2 cut(s) 47, 178
Kzo9I GATC 2 cut(s) 49, 160
LpnPI CCDG 8 cut(s) 9, 13, 63, 68, 72, 90, 165, 192
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 2 cut(s) 257, 317
MaeII ACGT 1 cut(s) 265
MalI GATC 2 cut(s) 51, 162
MboI GATC 2 cut(s) 49, 160
MboII GAAGA 1 cut(s) 144
MlsI TGGCCA 1 cut(s) 239
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 3 cut(s) 118, 139, 280
Mox20I TGGCCA 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 71, 158
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 78, 180
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 2 cut(s) 78, 180
NdeII GATC 2 cut(s) 49, 160
NlaIII CATG 2 cut(s) 47, 178
NspI RCATGY 1 cut(s) 178
PcsI WCGNNNNNNNCGW 2 cut(s) 271, 280
PctI GAATGC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 149
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 266
PsiI TTATAA 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 76, 178
PspGI CCWGG 2 cut(s) 76, 178
PvuII CAGCTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 49, 160
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 2 cut(s) 78, 180
SetI ASST 6 cut(s) 73, 189, 218, 262, 268, 322
SsiI CCGC 1 cut(s) 156
SspI AATATT 1 cut(s) 202
SspMI CTAG 2 cut(s) 257, 317
StyD4I CCNGG 2 cut(s) 76, 178
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 283
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 1 cut(s) 323
XceI RCATGY 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 2 cut(s) 257, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.