Rmu_sc0014755.1_g000003

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014755.1
OG0000449
Physical Location & Seq
Reverse (-)
15136 .. 16473
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014755.1_g000003.1.cds

Sequence Viewer

Length: 1338 bp
atgtcatcttcagcagaaacggtagcgaacatcgaagggctccttaagcagatcctcatatcggttccggctctatctctgatccgcttcaagtgcgtctccaggcactggctctctctcatttccgaccccgacttctgccgccgccacactctccgaaaccctaaccccaaaatctccgctttcttctcttcccaaaccaatgaagacaccaccatcaactccatcactctcggcagcccatccggtaatcccttcaaaactctcgccaattccgcctccgcgttgaggattctccagtcctgcaatggcctcttcctctgctctgtcgaattccccggagaagaagaagaagaaagaaactatcctcctgtatatgtcgtcaatcccaccaccaacaaattccgggctctctctgctccaagccttgcgaagaaggaggaaatgcatatgtttgtgaggtatggtttggctttcgacccttcgaaatcgcctcattacactgtggtgtgtgtcagtcacgacattctccgcggcaagcgccacagcatagagatatattcgtcggagacgggaacttgggtgaagcgtttcaaggctcttttcttccctagcccttccgacgagggcaggcacattgatactcgcagaatgcctatgcattttgatgagaggagcagggaaggggcagtgtattgcaacggcgcaattcattggataagaaacagatgggatgcgagcctgccattctgcttggagacagatggtgtggtcgaaacagttggattcgaaagaagtaaattggatgtgttgcactactatgacataggtgaagaaagtctgcggctcgctgctgctactcctccagttcctttggttgtgaaaaacattccgttggggaaagaacaaaactttcctactgagtttccccatttgattgatagatgctttggcgagtcaggtggtggctgtttgtatttgattgaggtttttgagcattgtaagactcaatttgaggtgatggagatggagagggactactctggctggtttgtcaagtaccatgttgatcttagtccggtagtcgcagctcttcctggacaggatccaaatgcttttgttgtcttgttcctttcacgagacgtggaaacagacggtgaggattcttcaactgatctttggttgcatatgcctggtaaggtcgtgtcttataatctcaggactaagagcttcaagacatctgttgagttagccaatagggaactttttctagctttagatgatgatgaatatgagggtgataactatccttacatggagactttagcttgtgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

445

Amino Acids

50.35

Weight (kDa)

5.45

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1212
AccB7I CCANNNNNTGG 1 cut(s) 108
AccII CGCG 2 cut(s) 284, 534
AciI CCGC 9 cut(s) 85, 142, 145, 180, 276, 282, 532, 534, 844
AclWI GGATC 4 cut(s) 46, 76, 1100, 1113
AcsI RAATTY 2 cut(s) 332, 401
AfaI GTAC 1 cut(s) 1061
AfiI CCNNNNNNNGG 3 cut(s) 61, 108, 288
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 5 cut(s) 91, 259, 595, 1170, 1234
AjiI CACGTC 1 cut(s) 1144
AjnI CCWGG 3 cut(s) 101, 1096, 1192
AleI CACNNNNGTG 1 cut(s) 506
AluBI AGCT 4 cut(s) 1091, 1230, 1274, 1328
AluI AGCT 4 cut(s) 1091, 1230, 1274, 1328
Alw26I GTCTC 5 cut(s) 103, 563, 752, 1134, 1313
AlwI GGATC 4 cut(s) 46, 76, 1100, 1113
AlwNI CAGNNNCTG 1 cut(s) 108
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 4 cut(s) 237, 851, 854, 1088
ApoI RAATTY 2 cut(s) 332, 401
Asp700I GAANNNNTTC 2 cut(s) 590, 1266
AspLEI GCGC 2 cut(s) 543, 707
AsuC2I CCSGG 2 cut(s) 339, 407
AsuHPI GGTGA 5 cut(s) 595, 842, 1030, 1169, 1310
AsuII TTCGAA 2 cut(s) 485, 789
BamHI GGATCC 1 cut(s) 1105
BanII GRGCYC 2 cut(s) 42, 412
BauI CACGAG 1 cut(s) 1137
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 4 cut(s) 249, 838, 841, 1100
BccI CCATC 7 cut(s) 224, 233, 250, 723, 758, 1015, 1021
BceAI ACGGC 1 cut(s) 718
BciT130I CCWGG 3 cut(s) 103, 1098, 1194
BcnI CCSGG 2 cut(s) 339, 407
BcoDI GTCTC 5 cut(s) 103, 563, 752, 1134, 1313
BfaI CTAG 2 cut(s) 612, 1271
BfoI RGCGCY 1 cut(s) 544
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 8 cut(s) 142, 145, 238, 535, 845, 852, 855, 1089
BlsI GCNGC 8 cut(s) 143, 146, 239, 536, 846, 853, 856, 1090
Bme1390I CCNGG 5 cut(s) 103, 339, 407, 1098, 1194
BmgBI CACGTC 1 cut(s) 1144
BmiI GGNNCC 3 cut(s) 41, 66, 1107
BmrFI CCNGG 5 cut(s) 103, 339, 407, 1098, 1194
BmsI GCATC 2 cut(s) 724, 935
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 3 cut(s) 85, 281, 849
Bpu14I TTCGAA 2 cut(s) 485, 789
BpuMI CCSGG 2 cut(s) 339, 407
BsaBI GATNNNNATC 1 cut(s) 1305
BsaJI CCNNGG 2 cut(s) 337, 532
BsaWI WCCGGW 2 cut(s) 245, 1078
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 108, 288
Bse1I ACTGG 3 cut(s) 113, 298, 866
Bse3DI GCAATG 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 1305
BseBI CCWGG 3 cut(s) 103, 1098, 1194
BseDI CCNNGG 2 cut(s) 337, 532
BseGI GGATG 3 cut(s) 242, 739, 811
BseJI GATNNNNATC 1 cut(s) 1305
BseLI CCNNNNNNNGG 3 cut(s) 61, 108, 288
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 912, 1231
BseNI ACTGG 3 cut(s) 113, 298, 866
BseRI GAGGAG 2 cut(s) 688, 852
BseXI GCAGC 4 cut(s) 249, 838, 841, 1100
Bsh1236I CGCG 2 cut(s) 284, 534
BshFI GGCC 1 cut(s) 312
BsiSI CCGG 5 cut(s) 68, 246, 339, 406, 1079
BslFI GGGAC 1 cut(s) 1049
BslI CCNNNNNNNGG 3 cut(s) 61, 108, 288
BsmAI GTCTC 5 cut(s) 103, 563, 752, 1134, 1313
BsmBI CGTCTC 3 cut(s) 103, 563, 1134
BsmFI GGGAC 1 cut(s) 1049
BsmI GAATGC 1 cut(s) 657
BsnI GGCC 1 cut(s) 312
Bsp119I TTCGAA 2 cut(s) 485, 789
Bsp1286I GDGCHC 2 cut(s) 42, 412
Bsp143I GATC 5 cut(s) 51, 81, 1069, 1105, 1174
BspACI CCGC 9 cut(s) 85, 142, 145, 180, 276, 282, 532, 534, 844
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 913, 1230
BspFNI CGCG 2 cut(s) 284, 534
BspLI GGNNCC 3 cut(s) 41, 66, 1107
BspPI GGATC 4 cut(s) 46, 76, 1100, 1113
BspQI GCTCTTC 1 cut(s) 1098
BspT104I TTCGAA 2 cut(s) 485, 789
BspTI CTTAAG 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 313
BsrI ACTGG 3 cut(s) 113, 298, 866
BssECI CCNNGG 2 cut(s) 337, 532
BssMI GATC 5 cut(s) 51, 81, 1069, 1105, 1174
BssSI CACGAG 1 cut(s) 1137
Bst2BI CACGAG 1 cut(s) 1137
Bst2UI CCWGG 3 cut(s) 103, 1098, 1194
Bst4CI ACNGT 4 cut(s) 22, 505, 781, 1157
Bst6I CTCTTC 3 cut(s) 196, 320, 1098
BstAFI CTTAAG 1 cut(s) 44
BstBI TTCGAA 2 cut(s) 485, 789
BstC8I GCNNGC 5 cut(s) 539, 632, 739, 743, 849
BstDEI CTNAG 4 cut(s) 921, 1073, 1217, 1224
BstDSI CCRYGG 1 cut(s) 532
BstF5I GGATG 3 cut(s) 242, 739, 811
BstFNI CGCG 2 cut(s) 284, 534
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 2 cut(s) 543, 707
BstKTI GATC 5 cut(s) 54, 84, 1072, 1108, 1177
BstMAI GTCTC 5 cut(s) 103, 563, 752, 1134, 1313
BstMBI GATC 5 cut(s) 51, 81, 1069, 1105, 1174
BstMWI GCNNNNNNNGC 5 cut(s) 46, 93, 275, 416, 540
BstNI CCWGG 3 cut(s) 103, 1098, 1194
BstSCI CCNGG 5 cut(s) 101, 337, 405, 1096, 1192
BstUI CGCG 2 cut(s) 284, 534
BstV1I GCAGC 4 cut(s) 249, 838, 841, 1100
BstV2I GAAGAC 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 51, 1105
BstYI RGATCY 2 cut(s) 51, 1105
BsuRI GGCC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 532
BtrI CACGTC 1 cut(s) 1144
BtsCI GGATG 3 cut(s) 242, 739, 811
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 3 cut(s) 106, 501, 696
Cac8I GCNNGC 5 cut(s) 539, 632, 739, 743, 849
CaiI CAGNNNCTG 1 cut(s) 108
CfoI GCGC 2 cut(s) 543, 707
Cfr42I CCGCGG 1 cut(s) 535
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 1060
CviAII CATG 2 cut(s) 1064, 1315
CviQI GTAC 1 cut(s) 1060
DdeI CTNAG 4 cut(s) 921, 1073, 1217, 1224
DpnI GATC 5 cut(s) 53, 83, 1071, 1107, 1176
DpnII GATC 5 cut(s) 51, 81, 1069, 1105, 1174
Eam1104I CTCTTC 3 cut(s) 196, 320, 1098
EarI CTCTTC 3 cut(s) 196, 320, 1098
EciI GGCGGA 1 cut(s) 265
Eco24I GRGCYC 2 cut(s) 42, 412
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 3 cut(s) 101, 1096, 1192
EcoT22I ATGCAT 2 cut(s) 450, 663
EcoT38I GRGCYC 2 cut(s) 42, 412
Esp3I CGTCTC 3 cut(s) 103, 563, 1134
FaeI CATG 2 cut(s) 1067, 1318
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 1049
FatI CATG 2 cut(s) 1063, 1314
FauNDI CATATG 2 cut(s) 450, 1188
Fnu4HI GCNGC 8 cut(s) 142, 145, 238, 535, 845, 852, 855, 1089
FokI GGATG 3 cut(s) 229, 746, 818
FriOI GRGCYC 2 cut(s) 42, 412
Fsp4HI GCNGC 8 cut(s) 142, 145, 238, 535, 845, 852, 855, 1089
FspBI CTAG 2 cut(s) 612, 1271
GlaI GCGC 2 cut(s) 542, 706
GluI GCNGC 8 cut(s) 142, 145, 238, 535, 845, 852, 855, 1089
GsuI CTGGAG 3 cut(s) 85, 281, 849
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 1 cut(s) 312
HapII CCGG 5 cut(s) 68, 246, 339, 406, 1079
HgaI GACGC 1 cut(s) 85
HhaI GCGC 2 cut(s) 543, 707
Hin1II CATG 2 cut(s) 1067, 1318
Hin6I GCGC 2 cut(s) 541, 705
HinP1I GCGC 2 cut(s) 541, 705
HinfI GANTC 5 cut(s) 292, 786, 956, 1006, 1163
HpaII CCGG 5 cut(s) 68, 246, 339, 406, 1079
HphI GGTGA 5 cut(s) 595, 842, 1030, 1169, 1310
Hpy188I TCNGA 5 cut(s) 81, 127, 158, 568, 622
Hpy188III TCNNGA 4 cut(s) 521, 1137, 1219, 1234
Hpy99I CGWCG 2 cut(s) 568, 626
HpyAV CCTTC 6 cut(s) 29, 265, 430, 492, 627, 677
HpyCH4III ACNGT 4 cut(s) 22, 505, 781, 1157
HpyCH4IV ACGT 1 cut(s) 1143
HpyCH4V TGCA 6 cut(s) 306, 448, 661, 699, 814, 1186
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 93, 275, 416, 540
HpyF3I CTNAG 4 cut(s) 921, 1073, 1217, 1224
HpySE526I ACGT 1 cut(s) 1143
Hsp92II CATG 2 cut(s) 1067, 1318
HspAI GCGC 2 cut(s) 541, 705
KspI CCGCGG 1 cut(s) 535
Kzo9I GATC 5 cut(s) 51, 81, 1069, 1105, 1174
LguI GCTCTTC 1 cut(s) 1098
LmnI GCTCC 3 cut(s) 45, 424, 675
Lsp1109I GCAGC 4 cut(s) 249, 838, 841, 1100
LweI GCATC 2 cut(s) 724, 935
MaeI CTAG 2 cut(s) 612, 1271
MaeII ACGT 1 cut(s) 1143
MaeIII GTNAC 1 cut(s) 518
MalI GATC 5 cut(s) 53, 83, 1071, 1107, 1176
MboI GATC 5 cut(s) 51, 81, 1069, 1105, 1174
MflI RGATCY 2 cut(s) 51, 1105
MhlI GDGCHC 2 cut(s) 42, 412
MluCI AATT 6 cut(s) 271, 332, 401, 708, 800, 1010
MlyI GAGTC 2 cut(s) 965, 1000
MmeI TCCRAC 4 cut(s) 150, 546, 645, 763
Mph1103I ATGCAT 2 cut(s) 450, 663
MroXI GAANNNNTTC 2 cut(s) 590, 1266
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 3 cut(s) 506, 666, 819
MspA1I CMGCKG 1 cut(s) 534
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 5 cut(s) 68, 246, 339, 406, 1079
MspR9I CCNGG 5 cut(s) 103, 339, 407, 1098, 1194
Mva1269I GAATGC 1 cut(s) 657
MvaI CCWGG 3 cut(s) 103, 1098, 1194
MvnI CGCG 2 cut(s) 284, 534
MwoI GCNNNNNNNGC 5 cut(s) 46, 93, 275, 416, 540
NciI CCSGG 2 cut(s) 339, 407
NdeI CATATG 2 cut(s) 450, 1188
NdeII GATC 5 cut(s) 51, 81, 1069, 1105, 1174
NlaIII CATG 2 cut(s) 1067, 1318
NlaIV GGNNCC 3 cut(s) 41, 66, 1107
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 518
NsiI ATGCAT 2 cut(s) 450, 663
NspV TTCGAA 2 cut(s) 485, 789
OliI CACNNNNGTG 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 1098
PctI GAATGC 1 cut(s) 657
PdmI GAANNNNTTC 2 cut(s) 590, 1266
PfeI GAWTC 3 cut(s) 292, 786, 1163
PflMI CCANNNNNTGG 1 cut(s) 108
PfoI TCCNGGA 1 cut(s) 1096
PkrI GCNGC 8 cut(s) 143, 146, 239, 536, 846, 853, 856, 1090
PleI GAGTC 2 cut(s) 964, 1000
PpsI GAGTC 2 cut(s) 964, 1000
PsiI TTATAA 1 cut(s) 1212
Psp6I CCWGG 3 cut(s) 101, 1096, 1192
PspGI CCWGG 3 cut(s) 101, 1096, 1192
PspN4I GGNNCC 3 cut(s) 41, 66, 1107
PstNI CAGNNNCTG 1 cut(s) 108
PsuI RGATCY 2 cut(s) 51, 1105
RsaI GTAC 1 cut(s) 1061
RsaNI GTAC 1 cut(s) 1060
RseI CAYNNNNRTG 3 cut(s) 506, 666, 819
SacII CCGCGG 1 cut(s) 535
SapI GCTCTTC 1 cut(s) 1098
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 8 cut(s) 142, 145, 238, 535, 845, 852, 855, 1089
Sau3AI GATC 5 cut(s) 51, 81, 1069, 1105, 1174
SchI GAGTC 2 cut(s) 965, 1000
ScrFI CCNGG 5 cut(s) 103, 339, 407, 1098, 1194
SduI GDGCHC 2 cut(s) 42, 412
SfaNI GCATC 2 cut(s) 724, 935
Sfr303I CCGCGG 1 cut(s) 535
SfuI TTCGAA 2 cut(s) 485, 789
SgrBI CCGCGG 1 cut(s) 535
SmiMI CAYNNNNRTG 3 cut(s) 506, 666, 819
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 6 cut(s) 271, 332, 401, 708, 800, 1010
SsiI CCGC 9 cut(s) 85, 142, 145, 180, 276, 282, 532, 534, 844
SspMI CTAG 2 cut(s) 612, 1271
StyD4I CCNGG 5 cut(s) 101, 337, 405, 1096, 1192
TaaI ACNGT 4 cut(s) 22, 505, 781, 1157
TaiI ACGT 1 cut(s) 1146
TaqI TCGA 6 cut(s) 33, 330, 477, 485, 774, 789
TasI AATT 6 cut(s) 271, 332, 401, 708, 800, 1010
TauI GCSGC 4 cut(s) 144, 147, 537, 847
TfiI GAWTC 3 cut(s) 292, 786, 1163
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 3 cut(s) 113, 508, 696
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 4 cut(s) 237, 851, 854, 1088
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 3 cut(s) 219, 701, 1302
TspGWI ACGGA 1 cut(s) 882
TspRI CASTG 3 cut(s) 113, 508, 696
Van91I CCANNNNNTGG 1 cut(s) 108
Vha464I CTTAAG 1 cut(s) 44
XapI RAATTY 2 cut(s) 332, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 590, 1266
XspI CTAG 2 cut(s) 612, 1271
Zsp2I ATGCAT 2 cut(s) 450, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.