RchiOBHm_Chr4g0388631

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000449
Physical Location & Seq
Forward (+)
3891138 .. 3893036
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36184

Sequence Viewer

Length: 1437 bp
ATGTCATCGGTAGAAACGGTAGCAAATATCGAAGAACTCCTGACAAATATCCTTGTGTCGGTGCCACCTCATTCTGTTGCCTGTTTCAAGTGCGTCTCCAAACATTGGCTCTCTCTTTTCTCCAACATCCAAAATCCCAAGATTTCTGCTTTCTTCTCCAGCAAGACCAAAGAAGAGTCCTTCAAGTTCATTCCTCTTCGTAAGCACGAAAGCCCATCTATGAATCCCTTTAAAAGCCTTAATAATTCCGTCCCTGATGGATCTAAGTTGAAGATTATTCAGTCCTGCAATGGCCTCTTTCTCTGCCTTTGCAAGTCGACGAAAGAAAGAAGACATGATCTCGTATACGTTTTCAATCCCACAACCAACCAATTCCGGGCTGTTTCTTCTCCAAGGTTTGGGGAAGACATGGGCGAATTTGCTTTTGAACGTTACGAATTTGGTTTTGTACGTTATGCTTTGGCTTTTGATCCTTCCAAATCGCCTCATTACAAGGTGGTCTGCGTGACTAACTTCAATGATCATGTTAGAATTTGTGGCTTTGATACCACTGTTGGAATTTGGTGCGGAAGCTTTGGTAGTAGTGGGCTAGGAACAATGTATCATTATGATGGGGGGCACCACGAGATAGACATATATTCATCAGAGACTGGAAAGTGGAAGCATCTTGATACTCCTTTCTTCCCCAGCCCCTCTGACGAGGGCGCAAACCATGATTGCAAGGAGATGGCCATGCACTTTGACTACAGGAGCAGGAAAGGCATTGTATACTGCAATGCCGCAGTTCATTGGATAAGAGGCAGTCGTGAAGCAAGATTGCCATTCTGCACATTTGGGGATGGTAGGAATGAGTTCATAAGAAACGAAAGTGATGTGCTGCACTACTTTGACGTAGGCGAAGAACGTTTGCTGCTAGCCTCCGCTACCCCTCCTGTCCCCTTGGTTGTCAAAAAAATTCCATTAATTTCCTCCCCTAGCCCTCATTATTCCTTTAAGTCTCCCTCTGAGTATCCCAGATTGGCTCGTAGATATTTTGGGGAGTGCTGTGGCCGTTTGTACTTGATTGAGACTTACCAGCATTGTAGCACTGAATTTGAGGTCATGGAGATGGAGAAAGACTACTCTGGCTGGTTTGTCAAGTATAATGTTGATCTGAGCCCAGTATTAACAGCTCTTCCTAGACAGGATTGGAATGCTTTTGTTATCTTGTGCCTTTCTCAGGAGGAGGAAACCTCCCTAGAAAGGCATGATGAGGTTGAGGATTCTTCAACTGTTTTGTTGTTGCATATTCCTAGTAAGGTCATATCTTATAATCTTAGGAATAAGACATTCAAGACATCGGTTGAGTTAGCCAACAAGGAACTTTTTCTAGGTTTTGAAAATCGTAGGGAAGACGATGTTAACTATCCTTACGTGAAGTCTTCAGCTTGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

478

Amino Acids

54.71

Weight (kDa)

6.32

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 63 - 225 4.1e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1311
AccB1I GGYRCC 2 cut(s) 61, 618
AccB7I CCANNNNNTGG 2 cut(s) 105, 398
AccI GTMKAC 3 cut(s) 317, 345, 768
AciI CCGC 3 cut(s) 567, 780, 921
AclI AACGTT 2 cut(s) 430, 904
AclWI GGATC 2 cut(s) 268, 464
AcoI YGGCCR 2 cut(s) 729, 1048
AcsI RAATTY 6 cut(s) 416, 437, 531, 558, 954, 1091
AcuI CTGAAG 1 cut(s) 1407
AfaI GTAC 2 cut(s) 450, 1058
AfiI CCNNNNNNNGG 6 cut(s) 58, 105, 376, 398, 1219, 1242
AgsI TTSAA 9 cut(s) 88, 184, 271, 355, 428, 517, 1269, 1333, 1379
AluBI AGCT 3 cut(s) 573, 1172, 1427
AluI AGCT 3 cut(s) 573, 1172, 1427
Alw26I GTCTC 4 cut(s) 100, 641, 1002, 1061
AlwI GGATC 2 cut(s) 268, 464
AlwNI CAGNNNCTG 1 cut(s) 650
AoxI GGCC 3 cut(s) 292, 729, 1048
ApeKI GCWGC 2 cut(s) 877, 910
ApoI RAATTY 6 cut(s) 416, 437, 531, 558, 954, 1091
AseI ATTAAT 1 cut(s) 962
Asp700I GAANNNNTTC 2 cut(s) 851, 1365
AspLEI GCGC 1 cut(s) 707
AsuC2I CCSGG 1 cut(s) 377
AsuNHI GCTAGC 1 cut(s) 913
BaeGI GKGCMC 1 cut(s) 621
BaeI ACNNNNGTAYC 2 cut(s) 537, 570
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 2 cut(s) 61, 618
BanII GRGCYC 1 cut(s) 1160
BauI CACGAG 1 cut(s) 623
BbsI GAAGAC 4 cut(s) 337, 411, 1398, 1413
BbvI GCAGC 2 cut(s) 864, 897
BccI CCATC 6 cut(s) 223, 251, 605, 721, 833, 1102
BceAI ACGGC 1 cut(s) 1035
BciVI GTATCC 1 cut(s) 1020
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 4 cut(s) 100, 641, 1002, 1061
BfaI CTAG 7 cut(s) 590, 914, 975, 1179, 1238, 1293, 1370
BfmI CTRYAG 1 cut(s) 745
BfuI GTATCC 1 cut(s) 1020
BisI GCNGC 3 cut(s) 780, 878, 911
BlsI GCNGC 3 cut(s) 781, 879, 912
Bme1390I CCNGG 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 63, 620
BmrFI CCNGG 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 1154
BmsI GCATC 1 cut(s) 673
BmtI GCTAGC 1 cut(s) 917
BmuI ACTGGG 1 cut(s) 1154
BpiI GAAGAC 4 cut(s) 337, 411, 1398, 1413
BplI GAGNNNNNCTC 2 cut(s) 1217, 1249
BpmI CTGGAG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 1414
BsaJI CCNNGG 2 cut(s) 392, 939
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 105, 376, 398, 1219, 1242
Bse1I ACTGG 2 cut(s) 655, 1160
Bse3DI GCAATG 2 cut(s) 295, 781
BseDI CCNNGG 2 cut(s) 392, 939
BseGI GGATG 2 cut(s) 126, 844
BseLI CCNNNNNNNGG 6 cut(s) 58, 105, 376, 398, 1219, 1242
BseMI GCAATG 2 cut(s) 295, 781
BseMII CTCAG 3 cut(s) 996, 1145, 1232
BseNI ACTGG 2 cut(s) 655, 1160
BseRI GAGGAG 1 cut(s) 1238
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 2 cut(s) 864, 897
BseYI CCCAGC 1 cut(s) 686
BsgI GTGCAG 2 cut(s) 811, 863
BshFI GGCC 3 cut(s) 294, 731, 1050
BshNI GGYRCC 2 cut(s) 61, 618
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 2 cut(s) 236, 920
BslI CCNNNNNNNGG 6 cut(s) 58, 105, 376, 398, 1219, 1242
BsmAI GTCTC 4 cut(s) 100, 641, 1002, 1061
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 236, 920
BsmI GAATGC 1 cut(s) 1198
BsnI GGCC 3 cut(s) 294, 731, 1050
Bsp1286I GDGCHC 2 cut(s) 621, 1160
Bsp143I GATC 5 cut(s) 260, 337, 469, 520, 1150
BspACI CCGC 3 cut(s) 567, 780, 921
BspANI GGCC 3 cut(s) 294, 731, 1050
BspCNI CTCAG 3 cut(s) 997, 1146, 1231
BspLI GGNNCC 2 cut(s) 63, 620
BspOI GCTAGC 1 cut(s) 917
BspPI GGATC 2 cut(s) 268, 464
BspQI GCTCTTC 1 cut(s) 1179
BspT107I GGYRCC 2 cut(s) 61, 618
BsrDI GCAATG 2 cut(s) 295, 781
BsrI ACTGG 2 cut(s) 655, 1160
BssECI CCNNGG 2 cut(s) 392, 939
BssMI GATC 5 cut(s) 260, 337, 469, 520, 1150
BssNAI GTATAC 2 cut(s) 346, 769
BssSI CACGAG 1 cut(s) 623
BssT1I CCWWGG 2 cut(s) 392, 939
Bst1107I GTATAC 2 cut(s) 346, 769
Bst2BI CACGAG 1 cut(s) 623
Bst4CI ACNGT 3 cut(s) 19, 553, 1273
Bst6I CTCTTC 3 cut(s) 168, 201, 1179
BstBAI YACGTR 1 cut(s) 1414
BstC8I GCNNGC 1 cut(s) 915
BstDEI CTNAG 5 cut(s) 264, 1005, 1154, 1218, 1316
BstENI CCTNNNNNAGG 1 cut(s) 1217
BstF5I GGATG 2 cut(s) 126, 844
BstHHI GCGC 1 cut(s) 707
BstKTI GATC 5 cut(s) 263, 340, 472, 523, 1153
BstMAI GTCTC 4 cut(s) 100, 641, 1002, 1061
BstMBI GATC 5 cut(s) 260, 337, 469, 520, 1150
BstMWI GCNNNNNNNGC 1 cut(s) 759
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 745
BstSLI GKGCMC 1 cut(s) 621
BstV1I GCAGC 2 cut(s) 864, 897
BstV2I GAAGAC 4 cut(s) 337, 411, 1398, 1413
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BstZ17I GTATAC 2 cut(s) 346, 769
BsuI GTATCC 1 cut(s) 1020
BsuRI GGCC 3 cut(s) 294, 731, 1050
BtsCI GGATG 2 cut(s) 126, 844
BtsIMutI CAGTG 2 cut(s) 549, 1086
Cac8I GCNNGC 1 cut(s) 915
CaiI CAGNNNCTG 1 cut(s) 650
CfoI GCGC 1 cut(s) 707
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 449, 1057
CviAII CATG 7 cut(s) 335, 409, 524, 713, 733, 1102, 1247
CviQI GTAC 2 cut(s) 449, 1057
DdeI CTNAG 5 cut(s) 264, 1005, 1154, 1218, 1316
DpnI GATC 5 cut(s) 262, 339, 471, 522, 1152
DpnII GATC 5 cut(s) 260, 337, 469, 520, 1150
DraI TTTAAA 1 cut(s) 232
EaeI YGGCCR 2 cut(s) 729, 1048
Eam1104I CTCTTC 3 cut(s) 168, 201, 1179
EarI CTCTTC 3 cut(s) 168, 201, 1179
Eco130I CCWWGG 2 cut(s) 392, 939
Eco24I GRGCYC 1 cut(s) 1160
Eco57I CTGAAG 1 cut(s) 1407
EcoNI CCTNNNNNAGG 1 cut(s) 1217
EcoT14I CCWWGG 2 cut(s) 392, 939
EcoT38I GRGCYC 1 cut(s) 1160
ErhI CCWWGG 2 cut(s) 392, 939
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 7 cut(s) 338, 412, 527, 716, 736, 1105, 1250
FaqI GGGAC 2 cut(s) 236, 920
FatI CATG 7 cut(s) 334, 408, 523, 712, 732, 1101, 1246
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 3 cut(s) 317, 345, 768
Fnu4HI GCNGC 3 cut(s) 780, 878, 911
FokI GGATG 2 cut(s) 113, 851
FriOI GRGCYC 1 cut(s) 1160
Fsp4HI GCNGC 3 cut(s) 780, 878, 911
FspBI CTAG 7 cut(s) 590, 914, 975, 1179, 1238, 1293, 1370
GlaI GCGC 1 cut(s) 706
GluI GCNGC 3 cut(s) 780, 878, 911
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 3 cut(s) 294, 731, 1050
HapII CCGG 1 cut(s) 376
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 707
Hin1II CATG 7 cut(s) 338, 412, 527, 716, 736, 1105, 1250
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HincII GTYRAC 2 cut(s) 318, 1402
HindII GTYRAC 2 cut(s) 318, 1402
HindIII AAGCTT 1 cut(s) 571
HinfI GANTC 3 cut(s) 176, 223, 1262
HpaI GTTAAC 1 cut(s) 1402
HpaII CCGG 1 cut(s) 376
Hpy166II GTNNAC 4 cut(s) 318, 346, 769, 1402
Hpy188I TCNGA 4 cut(s) 646, 697, 1006, 1155
Hpy188III TCNNGA 5 cut(s) 40, 668, 806, 1220, 1333
Hpy8I GTNNAC 4 cut(s) 318, 346, 769, 1402
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 190, 483
HpyCH4III ACNGT 3 cut(s) 19, 553, 1273
HpyCH4IV ACGT 6 cut(s) 348, 430, 451, 891, 904, 1413
HpyCH4V TGCA 8 cut(s) 288, 312, 720, 736, 774, 828, 880, 1285
HpyF10VI GCNNNNNNNGC 1 cut(s) 759
HpyF3I CTNAG 5 cut(s) 264, 1005, 1154, 1218, 1316
HpySE526I ACGT 6 cut(s) 348, 430, 451, 891, 904, 1413
Hsp92II CATG 7 cut(s) 338, 412, 527, 716, 736, 1105, 1250
HspAI GCGC 1 cut(s) 705
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 1402
Kzo9I GATC 5 cut(s) 260, 337, 469, 520, 1150
LguI GCTCTTC 1 cut(s) 1179
LmnI GCTCC 1 cut(s) 750
Lsp1109I GCAGC 2 cut(s) 864, 897
LweI GCATC 1 cut(s) 673
MaeI CTAG 7 cut(s) 590, 914, 975, 1179, 1238, 1293, 1370
MaeII ACGT 6 cut(s) 348, 430, 451, 891, 904, 1413
MaeIII GTNAC 2 cut(s) 431, 505
MalI GATC 5 cut(s) 262, 339, 471, 522, 1152
MboI GATC 5 cut(s) 260, 337, 469, 520, 1150
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 621, 1160
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 9 cut(s) 244, 371, 416, 437, 531, 558, 954, 963, 1091
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 147, 535
Mox20I TGGCCA 1 cut(s) 731
MroXI GAANNNNTTC 2 cut(s) 851, 1365
MscI TGGCCA 1 cut(s) 731
MseI TTAA 6 cut(s) 231, 240, 962, 993, 1166, 1401
MslI CAYNNNNRTG 2 cut(s) 609, 1106
Msp20I TGGCCA 1 cut(s) 731
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 1198
MwoI GCNNNNNNNGC 1 cut(s) 759
NciI CCSGG 1 cut(s) 377
NdeII GATC 5 cut(s) 260, 337, 469, 520, 1150
NheI GCTAGC 1 cut(s) 913
NlaIII CATG 7 cut(s) 338, 412, 527, 716, 736, 1105, 1250
NlaIV GGNNCC 2 cut(s) 63, 620
NmuCI GTSAC 1 cut(s) 505
PciSI GCTCTTC 1 cut(s) 1179
PctI GAATGC 1 cut(s) 1198
PdmI GAANNNNTTC 2 cut(s) 851, 1365
PfeI GAWTC 2 cut(s) 223, 1262
PflMI CCANNNNNTGG 2 cut(s) 105, 398
PkrI GCNGC 3 cut(s) 781, 879, 912
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 1414
PshBI ATTAAT 1 cut(s) 962
PsiI TTATAA 1 cut(s) 1311
Psp1406I AACGTT 2 cut(s) 430, 904
PspFI CCCAGC 1 cut(s) 686
PspN4I GGNNCC 2 cut(s) 63, 620
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 2 cut(s) 450, 1058
RsaNI GTAC 2 cut(s) 449, 1057
RseI CAYNNNNRTG 2 cut(s) 609, 1106
SalI GTCGAC 1 cut(s) 316
SapI GCTCTTC 1 cut(s) 1179
SaqAI TTAA 6 cut(s) 231, 240, 962, 993, 1166, 1401
SatI GCNGC 3 cut(s) 780, 878, 911
Sau3AI GATC 5 cut(s) 260, 337, 469, 520, 1150
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 2 cut(s) 621, 1160
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 1 cut(s) 745
SmiMI CAYNNNNRTG 2 cut(s) 609, 1106
Sse9I AATT 9 cut(s) 244, 371, 416, 437, 531, 558, 954, 963, 1091
SsiI CCGC 3 cut(s) 567, 780, 921
SspMI CTAG 7 cut(s) 590, 914, 975, 1179, 1238, 1293, 1370
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 2 cut(s) 392, 939
TaaI ACNGT 3 cut(s) 19, 553, 1273
TaiI ACGT 6 cut(s) 351, 433, 454, 894, 907, 1416
TaqI TCGA 2 cut(s) 30, 317
TasI AATT 9 cut(s) 244, 371, 416, 437, 531, 558, 954, 963, 1091
TatI WGTACW 1 cut(s) 1056
TauI GCSGC 1 cut(s) 782
TfiI GAWTC 2 cut(s) 223, 1262
Tru1I TTAA 6 cut(s) 231, 240, 962, 993, 1166, 1401
Tru9I TTAA 6 cut(s) 231, 240, 962, 993, 1166, 1401
TscAI CASTG 2 cut(s) 556, 1093
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 877, 910
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 5 cut(s) 178, 236, 630, 776, 844
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 556, 1093
Van91I CCANNNNNTGG 2 cut(s) 105, 398
VspI ATTAAT 1 cut(s) 962
XagI CCTNNNNNAGG 1 cut(s) 1217
XapI RAATTY 6 cut(s) 416, 437, 531, 558, 954, 1091
XmiI GTMKAC 3 cut(s) 317, 345, 768
XmnI GAANNNNTTC 2 cut(s) 851, 1365
XspI CTAG 7 cut(s) 590, 914, 975, 1179, 1238, 1293, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.