Rorug03G0319900

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000449
Physical Location & Seq
Reverse (-)
34560211 .. 34561043
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0319900.1

Sequence Viewer

Length: 744 bp
ATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

247

Amino Acids

26.87

Weight (kDa)

5.12

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 9.5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 612
AccB7I CCANNNNNTGG 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 728
AciI CCGC 2 cut(s) 17, 678
AclWI GGATC 8 cut(s) 165, 354, 402, 415, 435, 448, 483, 700
AcuI CTGAAG 1 cut(s) 644
AcyI GRCGYC 1 cut(s) 609
AfaI GTAC 2 cut(s) 115, 352
AfiI CCNNNNNNNGG 2 cut(s) 437, 599
AgsI TTSAA 1 cut(s) 575
AhlI ACTAGT 2 cut(s) 338, 467
AjnI CCWGG 2 cut(s) 116, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 6 cut(s) 7, 77, 223, 434, 712, 734
AluI AGCT 6 cut(s) 7, 77, 223, 434, 712, 734
Alw21I GWGCWC 4 cut(s) 9, 600, 652, 714
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 2 cut(s) 596, 648
AlwI GGATC 8 cut(s) 165, 354, 402, 415, 435, 448, 483, 700
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 728
AoxI GGCC 1 cut(s) 428
ApaLI GTGCAC 2 cut(s) 596, 648
ApeKI GCWGC 3 cut(s) 74, 317, 734
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
Asp700I GAANNNNTTC 1 cut(s) 340
AspS9I GGNCC 3 cut(s) 381, 428, 462
AsuHPI GGTGA 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 381, 462
BaeGI GKGCMC 4 cut(s) 188, 330, 600, 652
BamHI GGATCC 2 cut(s) 407, 440
BanII GRGCYC 3 cut(s) 9, 286, 714
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 4 cut(s) 9, 600, 652, 714
BbvI GCAGC 3 cut(s) 86, 304, 721
BccI CCATC 3 cut(s) 419, 476, 733
BceAI ACGGC 2 cut(s) 96, 616
BciT130I CCWGG 2 cut(s) 118, 566
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 338, 467
BfaI CTAG 3 cut(s) 339, 468, 742
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 75, 318, 735
BlpI GCTNAGC 1 cut(s) 713
BlsI GCNGC 3 cut(s) 76, 319, 736
Bme1390I CCNGG 2 cut(s) 118, 566
Bme18I GGWCC 2 cut(s) 381, 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 381, 428, 462
BmiI GGNNCC 7 cut(s) 30, 269, 382, 409, 442, 463, 511
BmrFI CCNGG 2 cut(s) 118, 566
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 5 cut(s) 117, 203, 306, 546, 681
Bpu10I CCTNAGC 1 cut(s) 673
Bpu1102I GCTNAGC 1 cut(s) 713
BpuEI CTTGAG 2 cut(s) 137, 728
BsaHI GRCGYC 1 cut(s) 609
BsaJI CCNNGG 2 cut(s) 636, 688
BsaWI WCCGGW 1 cut(s) 728
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 599
Bse1I ACTGG 7 cut(s) 229, 323, 358, 391, 400, 529, 698
BseAI TCCGGA 1 cut(s) 728
BseBI CCWGG 2 cut(s) 118, 566
BseDI CCNNGG 2 cut(s) 636, 688
BseGI GGATG 2 cut(s) 536, 725
BseLI CCNNNNNNNGG 2 cut(s) 437, 599
BseMII CTCAG 2 cut(s) 687, 727
BseNI ACTGG 7 cut(s) 229, 323, 358, 391, 400, 529, 698
BseRI GAGGAG 3 cut(s) 68, 567, 570
BseSI GKGCMC 4 cut(s) 188, 330, 600, 652
BseXI GCAGC 3 cut(s) 86, 304, 721
BshFI GGCC 1 cut(s) 430
BsiHKAI GWGCWC 4 cut(s) 9, 600, 652, 714
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 729
BslI CCNNNNNNNGG 2 cut(s) 437, 599
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 7 cut(s) 9, 188, 286, 330, 600, 652, 714
Bsp13I TCCGGA 1 cut(s) 728
Bsp1720I GCTNAGC 1 cut(s) 713
BspACI CCGC 2 cut(s) 17, 678
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 2 cut(s) 686, 726
BspEI TCCGGA 1 cut(s) 728
BspLI GGNNCC 7 cut(s) 30, 269, 382, 409, 442, 463, 511
BspPI GGATC 8 cut(s) 165, 354, 402, 415, 435, 448, 483, 700
BsrI ACTGG 7 cut(s) 229, 323, 358, 391, 400, 529, 698
BssECI CCNNGG 2 cut(s) 636, 688
BssNI GRCGYC 1 cut(s) 609
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 118, 566
Bst4CI ACNGT 1 cut(s) 689
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 609
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 673, 713
BstDSI CCRYGG 1 cut(s) 688
BstEII GGTNACC 1 cut(s) 617
BstF5I GGATG 2 cut(s) 536, 725
BstMAI GTCTC 1 cut(s) 221
BstNI CCWGG 2 cut(s) 118, 566
BstNSI RCATGY 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 2 cut(s) 116, 564
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 4 cut(s) 188, 330, 600, 652
BstV1I GCAGC 3 cut(s) 86, 304, 721
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 7 cut(s) 157, 210, 359, 407, 440, 488, 692
BstXI CCANNNNNNTGG 1 cut(s) 77
BstYI RGATCY 7 cut(s) 157, 210, 359, 407, 440, 488, 692
BsuRI GGCC 1 cut(s) 430
BtgI CCRYGG 1 cut(s) 688
BtsCI GGATG 2 cut(s) 536, 725
BtsIMutI CAGTG 2 cut(s) 330, 384
Cac8I GCNNGC 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 381, 428, 462
CsiI ACCWGGT 1 cut(s) 116
Csp6I GTAC 2 cut(s) 114, 351
CviAII CATG 4 cut(s) 94, 239, 331, 653
CviQI GTAC 2 cut(s) 114, 351
DdeI CTNAG 2 cut(s) 673, 713
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Ecl136II GAGCTC 2 cut(s) 7, 712
Eco24I GRGCYC 3 cut(s) 9, 286, 714
Eco47I GGWCC 2 cut(s) 381, 462
Eco53kI GAGCTC 2 cut(s) 7, 712
Eco57I CTGAAG 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 617
EcoICRI GAGCTC 2 cut(s) 7, 712
EcoO65I GGTNACC 1 cut(s) 617
EcoRII CCWGG 2 cut(s) 116, 564
EcoT38I GRGCYC 3 cut(s) 9, 286, 714
FaeI CATG 4 cut(s) 97, 242, 334, 656
FaiI YATR 6 cut(s) 95, 168, 234, 240, 332, 654
FatI CATG 4 cut(s) 93, 238, 330, 652
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 75, 318, 735
FokI GGATG 2 cut(s) 523, 712
FriOI GRGCYC 3 cut(s) 9, 286, 714
Fsp4HI GCNGC 3 cut(s) 75, 318, 735
FspBI CTAG 3 cut(s) 339, 468, 742
GluI GCNGC 3 cut(s) 75, 318, 735
GsuI CTGGAG 5 cut(s) 117, 203, 306, 546, 681
HaeIII GGCC 1 cut(s) 430
HapII CCGG 1 cut(s) 729
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 4 cut(s) 97, 242, 334, 656
HinfI GANTC 3 cut(s) 124, 147, 202
HpaII CCGG 1 cut(s) 729
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 4 cut(s) 384, 465, 598, 650
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 6 cut(s) 134, 206, 271, 287, 707, 729
Hpy8I GTNNAC 4 cut(s) 384, 465, 598, 650
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 1 cut(s) 689
HpyCH4IV ACGT 2 cut(s) 276, 609
HpyCH4V TGCA 3 cut(s) 544, 598, 650
HpyF3I CTNAG 2 cut(s) 673, 713
HpySE526I ACGT 2 cut(s) 276, 609
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 4 cut(s) 97, 242, 334, 656
Kpn2I TCCGGA 1 cut(s) 728
LmnI GCTCC 4 cut(s) 4, 12, 325, 731
Lsp1109I GCAGC 3 cut(s) 86, 304, 721
MabI ACCWGGT 1 cut(s) 116
MaeI CTAG 3 cut(s) 339, 468, 742
MaeII ACGT 2 cut(s) 276, 609
MaeIII GTNAC 2 cut(s) 617, 680
MboII GAAGA 2 cut(s) 572, 637
MflI RGATCY 7 cut(s) 157, 210, 359, 407, 440, 488, 692
MhlI GDGCHC 7 cut(s) 9, 188, 286, 330, 600, 652, 714
MluCI AATT 3 cut(s) 373, 421, 454
MroI TCCGGA 1 cut(s) 728
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 3 cut(s) 77, 223, 434
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 2 cut(s) 118, 566
MvaI CCWGG 2 cut(s) 118, 566
NlaIII CATG 4 cut(s) 97, 242, 334, 656
NlaIV GGNNCC 7 cut(s) 30, 269, 382, 409, 442, 463, 511
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 3 cut(s) 124, 147, 202
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 3 cut(s) 76, 319, 736
Psp124BI GAGCTC 2 cut(s) 9, 714
Psp6I CCWGG 2 cut(s) 116, 564
PspEI GGTNACC 1 cut(s) 617
PspGI CCWGG 2 cut(s) 116, 564
PspN4I GGNNCC 7 cut(s) 30, 269, 382, 409, 442, 463, 511
PspPI GGNCC 3 cut(s) 381, 428, 462
PsuI RGATCY 7 cut(s) 157, 210, 359, 407, 440, 488, 692
PvuII CAGCTG 3 cut(s) 77, 223, 434
RsaI GTAC 2 cut(s) 115, 352
RsaNI GTAC 2 cut(s) 114, 351
SacI GAGCTC 2 cut(s) 9, 714
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 75, 318, 735
Sau96I GGNCC 3 cut(s) 381, 428, 462
ScrFI CCNGG 2 cut(s) 118, 566
SduI GDGCHC 7 cut(s) 9, 188, 286, 330, 600, 652, 714
SexAI ACCWGGT 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 381, 462
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 152, 285, 707
SmoI CTYRAG 3 cut(s) 152, 285, 707
SpeI ACTAGT 2 cut(s) 338, 467
Sse9I AATT 3 cut(s) 373, 421, 454
SsiI CCGC 2 cut(s) 17, 678
SspMI CTAG 3 cut(s) 339, 468, 742
SstI GAGCTC 2 cut(s) 9, 714
StyD4I CCNGG 2 cut(s) 116, 564
TaaI ACNGT 1 cut(s) 689
TaiI ACGT 2 cut(s) 279, 612
TaqI TCGA 2 cut(s) 286, 414
TasI AATT 3 cut(s) 373, 421, 454
TfiI GAWTC 3 cut(s) 124, 147, 202
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 330, 391
TseI GCWGC 3 cut(s) 74, 317, 734
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 330, 391
Van91I CCANNNNNTGG 1 cut(s) 437
VneI GTGCAC 2 cut(s) 596, 648
VpaK11BI GGWCC 2 cut(s) 381, 462
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 3 cut(s) 339, 468, 742
ZraI GACGTC 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.