Rh4BG017100

F-box protein At5g07610-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
2717686 .. 2736664
18979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG017100.1

Sequence Viewer

Length: 1326 bp
ATGGAATTCTCCGGTCCGGTGTTCACATGGAGTAATGGAACAGTACATGAACGACTTGATCGGGGATTTATGAATACTATGGCCGCTGATGAATTCCCTCGAGCTCATGAGTTCCATGTGGAGGTGGGAGCGAGTGATCACTTGCCTTTAGTTTTTGATTTGGAAGGGACTGGTCTACAGAGGAAAGTTGGGGGAAATAGACGTTTTATGTTTGAGAATTTTTGGGTCAAGGAGCAGAGATGTGGGGAAATTGTGAAGGAGGTGTGGGAGAATCAATCCATGATGGACAACAACCTGTTGGGTAAAGTCACTAAATGTGCCGAGGACTTATCTCTTTGGAATAAAACGATCATCGGGCATGTCCCTAGAAAAATTGCCGAACTTAAAGCCTCTCTACAGCAATTTCCAATTGATGTGCAAAGTGACCATGATAGAAAGCAACGTGCTGTGATTAAAACAGAACTGGAAAAGTATGTCGAGATGGAGGAAAATCATTATGATGGGGGGCACCACGAGATAGACATATATTCATCAGAGACTGGAAAGTGGAAGCATCTTGATACTCCTTTCTTCCCCAGCCCCTCTGACGAGGGCGCAAACCATGATTGCAAGGAGATGGCCATGCACTTTGACTACAGGAGCAGGAAAGGCATTGTATACTGCAATGCCGCAGTTCATTGGATAAGAGGCAGTCGTGAAGCAAGATTGCCATTCTGCACATTTGGGGATGGTAGGAATGAGTTCATAAGAAACGAAAGTGATGTGCTGCACTACTTTGACGTAGGCGAAGAACGTTTGCTGCTAGCCTCCGCTACCCCTCCTGTCCCCTTGGTTGTCAAAAAAATTCCATTAATTTCCTCCCCTAGCCCTCATTATTCCTTTAAGTCTCCCTCTGAGTATCCCAGATTGGCTCGTAGATATTTTGGGGAGTGCTGTGGCCGTTTGTACTTGATTGAGACTTACCAGCATTGTAGCACTGAATTTGAGGTCATGGAGATGGAGAAAGACTACTCTGGCTGGTTTGTCAAGTATAATGTTGATCTGAGCCCAGTATTAACAGCTCTTCCTAGACAGGATTGGAATGCTTTTGTTATCTTGTGCCTTTCTCAGGAGGAGGAAACCTCCCTAGAAAGGCATGATGAGGTTGAGGATTCTTCAACTGTTTTGTTGTTGCATATTCCTAGTAAGGTCATATCTTATAATCTTAGGAATAAGACATTCAAGACATCGGTTGAGTTAGCCAACAAGGAACTTTTTCTAGGTTTTGAAAATCGTAGGGAAGACGATGTTAACTATCCTTACGTGAAGTCTTCAGCTTGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

441

Amino Acids

51.08

Weight (kDa)

5.56

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1200
AccB1I GGYRCC 1 cut(s) 507
AccI GTMKAC 2 cut(s) 175, 657
AciI CCGC 3 cut(s) 84, 669, 810
AclI AACGTT 1 cut(s) 793
AcoI YGGCCR 3 cut(s) 81, 618, 937
AcsI RAATTY 5 cut(s) 5, 92, 217, 843, 980
AcuI CTGAAG 1 cut(s) 1296
AfaI GTAC 2 cut(s) 45, 947
AfiI CCNNNNNNNGG 3 cut(s) 121, 1108, 1131
AgsI TTSAA 3 cut(s) 1158, 1222, 1268
AluBI AGCT 3 cut(s) 104, 1061, 1316
AluI AGCT 3 cut(s) 104, 1061, 1316
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 3 cut(s) 530, 891, 950
AlwNI CAGNNNCTG 1 cut(s) 539
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 3 cut(s) 81, 618, 937
ApeKI GCWGC 2 cut(s) 766, 799
ApoI RAATTY 5 cut(s) 5, 92, 217, 843, 980
AseI ATTAAT 1 cut(s) 851
Asp700I GAANNNNTTC 2 cut(s) 740, 1254
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 1 cut(s) 14
AsuNHI GCTAGC 1 cut(s) 802
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 510
BalI TGGCCA 1 cut(s) 620
BanI GGYRCC 1 cut(s) 507
BanII GRGCYC 2 cut(s) 106, 1049
BauI CACGAG 1 cut(s) 512
BbsI GAAGAC 2 cut(s) 1287, 1302
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 753, 786
BccI CCATC 6 cut(s) 277, 475, 494, 610, 722, 991
BceAI ACGGC 1 cut(s) 924
BciVI GTATCC 1 cut(s) 909
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 3 cut(s) 530, 891, 950
BfaI CTAG 7 cut(s) 366, 803, 864, 1068, 1127, 1182, 1259
BfmI CTRYAG 3 cut(s) 176, 395, 634
BfuI GTATCC 1 cut(s) 909
BisI GCNGC 4 cut(s) 84, 669, 767, 800
BlsI GCNGC 4 cut(s) 85, 670, 768, 801
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 509
BmrI ACTGGG 1 cut(s) 1043
BmsI GCATC 1 cut(s) 562
BmtI GCTAGC 1 cut(s) 806
BmuI ACTGGG 1 cut(s) 1043
BpiI GAAGAC 2 cut(s) 1287, 1302
BplI GAGNNNNNCTC 2 cut(s) 1106, 1138
BsaAI YACGTR 1 cut(s) 1303
BsaJI CCNNGG 2 cut(s) 321, 828
BsaWI WCCGGW 2 cut(s) 11, 16
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 1108, 1131
Bse1I ACTGG 4 cut(s) 175, 468, 544, 1049
Bse3DI GCAATG 1 cut(s) 670
BseDI CCNNGG 2 cut(s) 321, 828
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 3 cut(s) 121, 1108, 1131
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 3 cut(s) 885, 1034, 1121
BseNI ACTGG 4 cut(s) 175, 468, 544, 1049
BseRI GAGGAG 1 cut(s) 1127
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 2 cut(s) 753, 786
BseYI CCCAGC 1 cut(s) 575
BsgI GTGCAG 2 cut(s) 700, 752
BshFI GGCC 3 cut(s) 83, 620, 939
BshNI GGYRCC 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 2 cut(s) 12, 17
BslFI GGGAC 3 cut(s) 181, 347, 809
BslI CCNNNNNNNGG 3 cut(s) 121, 1108, 1131
BsmAI GTCTC 3 cut(s) 530, 891, 950
BsmFI GGGAC 3 cut(s) 181, 347, 809
BsmI GAATGC 1 cut(s) 1087
BsnI GGCC 3 cut(s) 83, 620, 939
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 3 cut(s) 106, 510, 1049
Bsp143I GATC 4 cut(s) 58, 136, 348, 1039
BspACI CCGC 3 cut(s) 84, 669, 810
BspANI GGCC 3 cut(s) 83, 620, 939
BspCNI CTCAG 3 cut(s) 886, 1035, 1120
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 509
BspOI GCTAGC 1 cut(s) 806
BspQI GCTCTTC 1 cut(s) 1068
BspT107I GGYRCC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 670
BsrI ACTGG 4 cut(s) 175, 468, 544, 1049
BssECI CCNNGG 2 cut(s) 321, 828
BssMI GATC 4 cut(s) 58, 136, 348, 1039
BssNAI GTATAC 1 cut(s) 658
BssSI CACGAG 1 cut(s) 512
BssT1I CCWWGG 1 cut(s) 828
Bst1107I GTATAC 1 cut(s) 658
Bst2BI CACGAG 1 cut(s) 512
Bst4CI ACNGT 2 cut(s) 43, 1162
Bst6I CTCTTC 1 cut(s) 1068
BstBAI YACGTR 1 cut(s) 1303
BstC8I GCNNGC 1 cut(s) 804
BstDEI CTNAG 4 cut(s) 894, 1043, 1107, 1205
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstF5I GGATG 1 cut(s) 733
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 4 cut(s) 61, 139, 351, 1042
BstMAI GTCTC 3 cut(s) 530, 891, 950
BstMBI GATC 4 cut(s) 58, 136, 348, 1039
BstMWI GCNNNNNNNGC 1 cut(s) 648
BstNSI RCATGY 1 cut(s) 362
BstSFI CTRYAG 3 cut(s) 176, 395, 634
BstSLI GKGCMC 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 753, 786
BstV2I GAAGAC 2 cut(s) 1287, 1302
BstZ17I GTATAC 1 cut(s) 658
BsuI GTATCC 1 cut(s) 909
BsuRI GGCC 3 cut(s) 83, 620, 939
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 1 cut(s) 975
Cac8I GCNNGC 1 cut(s) 804
CaiI CAGNNNCTG 1 cut(s) 539
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 596
Cfr13I GGNCC 1 cut(s) 14
CpoI CGGWCCG 1 cut(s) 14
Csp6I GTAC 2 cut(s) 44, 946
CspI CGGWCCG 1 cut(s) 14
CviQI GTAC 2 cut(s) 44, 946
DdeI CTNAG 4 cut(s) 894, 1043, 1107, 1205
DpnI GATC 4 cut(s) 60, 138, 350, 1041
DpnII GATC 4 cut(s) 58, 136, 348, 1039
EaeI YGGCCR 3 cut(s) 81, 618, 937
Eam1104I CTCTTC 1 cut(s) 1068
EarI CTCTTC 1 cut(s) 1068
Ecl136II GAGCTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 828
Eco24I GRGCYC 2 cut(s) 106, 1049
Eco47I GGWCC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 1296
Eco88I CYCGRG 1 cut(s) 99
EcoICRI GAGCTC 1 cut(s) 104
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoRI GAATTC 2 cut(s) 5, 92
EcoT14I CCWWGG 1 cut(s) 828
EcoT38I GRGCYC 2 cut(s) 106, 1049
ErhI CCWWGG 1 cut(s) 828
FaqI GGGAC 3 cut(s) 181, 347, 809
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 2 cut(s) 175, 657
Fnu4HI GCNGC 4 cut(s) 84, 669, 767, 800
FokI GGATG 1 cut(s) 740
FriOI GRGCYC 2 cut(s) 106, 1049
Fsp4HI GCNGC 4 cut(s) 84, 669, 767, 800
FspBI CTAG 7 cut(s) 366, 803, 864, 1068, 1127, 1182, 1259
GlaI GCGC 1 cut(s) 595
GluI GCNGC 4 cut(s) 84, 669, 767, 800
GsaI CCCAGC 1 cut(s) 579
HaeIII GGCC 3 cut(s) 83, 620, 939
HapII CCGG 2 cut(s) 12, 17
HhaI GCGC 1 cut(s) 596
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 1 cut(s) 1291
HindII GTYRAC 1 cut(s) 1291
HinfI GANTC 2 cut(s) 271, 1151
HpaI GTTAAC 1 cut(s) 1291
HpaII CCGG 2 cut(s) 12, 17
Hpy166II GTNNAC 4 cut(s) 24, 176, 658, 1291
Hpy188I TCNGA 4 cut(s) 535, 586, 895, 1044
Hpy188III TCNNGA 6 cut(s) 107, 478, 557, 695, 1109, 1222
Hpy8I GTNNAC 4 cut(s) 24, 176, 658, 1291
HpyAV CCTTC 2 cut(s) 158, 250
HpyCH4III ACNGT 2 cut(s) 43, 1162
HpyCH4IV ACGT 5 cut(s) 202, 442, 780, 793, 1302
HpyCH4V TGCA 7 cut(s) 418, 609, 625, 663, 717, 769, 1174
HpyF10VI GCNNNNNNNGC 1 cut(s) 648
HpyF3I CTNAG 4 cut(s) 894, 1043, 1107, 1205
HpySE526I ACGT 5 cut(s) 202, 442, 780, 793, 1302
HspAI GCGC 1 cut(s) 594
Ksp22I TGATCA 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 1291
Kzo9I GATC 4 cut(s) 58, 136, 348, 1039
LguI GCTCTTC 1 cut(s) 1068
LmnI GCTCC 3 cut(s) 128, 232, 639
Lsp1109I GCAGC 2 cut(s) 753, 786
LweI GCATC 1 cut(s) 562
MaeI CTAG 7 cut(s) 366, 803, 864, 1068, 1127, 1182, 1259
MaeII ACGT 5 cut(s) 202, 442, 780, 793, 1302
MaeIII GTNAC 2 cut(s) 307, 422
MalI GATC 4 cut(s) 60, 138, 350, 1041
MboI GATC 4 cut(s) 58, 136, 348, 1039
MboII GAAGA 6 cut(s) 562, 800, 1055, 1146, 1292, 1302
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 106, 510, 1049
MlsI TGGCCA 1 cut(s) 620
MluNI TGGCCA 1 cut(s) 620
Mox20I TGGCCA 1 cut(s) 620
MroXI GAANNNNTTC 2 cut(s) 740, 1254
MscI TGGCCA 1 cut(s) 620
MseI TTAA 6 cut(s) 384, 453, 851, 882, 1055, 1290
MslI CAYNNNNRTG 2 cut(s) 498, 995
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 12, 17
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 1087
MwoI GCNNNNNNNGC 1 cut(s) 648
NdeII GATC 4 cut(s) 58, 136, 348, 1039
NheI GCTAGC 1 cut(s) 802
NlaIV GGNNCC 1 cut(s) 509
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 2 cut(s) 307, 422
NspI RCATGY 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 99
PagI TCATGA 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 1068
PctI GAATGC 1 cut(s) 1087
PdmI GAANNNNTTC 2 cut(s) 740, 1254
PfeI GAWTC 2 cut(s) 271, 1151
PkrI GCNGC 4 cut(s) 85, 670, 768, 801
Ppu21I YACGTR 1 cut(s) 1303
PshBI ATTAAT 1 cut(s) 851
PsiI TTATAA 1 cut(s) 1200
Psp124BI GAGCTC 1 cut(s) 106
Psp1406I AACGTT 1 cut(s) 793
PspFI CCCAGC 1 cut(s) 575
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 539
RsaI GTAC 2 cut(s) 45, 947
RsaNI GTAC 2 cut(s) 44, 946
RseI CAYNNNNRTG 2 cut(s) 498, 995
Rsr2I CGGWCCG 1 cut(s) 14
RsrII CGGWCCG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 1068
SaqAI TTAA 6 cut(s) 384, 453, 851, 882, 1055, 1290
SatI GCNGC 4 cut(s) 84, 669, 767, 800
Sau3AI GATC 4 cut(s) 58, 136, 348, 1039
Sau96I GGNCC 1 cut(s) 14
SduI GDGCHC 3 cut(s) 106, 510, 1049
SfaNI GCATC 1 cut(s) 562
SfcI CTRYAG 3 cut(s) 176, 395, 634
Sfr274I CTCGAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 498, 995
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SsiI CCGC 3 cut(s) 84, 669, 810
SspMI CTAG 7 cut(s) 366, 803, 864, 1068, 1127, 1182, 1259
SstI GAGCTC 1 cut(s) 106
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 2 cut(s) 43, 1162
TaiI ACGT 5 cut(s) 205, 445, 783, 796, 1305
TaqI TCGA 2 cut(s) 100, 477
TatI WGTACW 2 cut(s) 43, 945
TauI GCSGC 2 cut(s) 86, 671
TfiI GAWTC 2 cut(s) 271, 1151
Tru1I TTAA 6 cut(s) 384, 453, 851, 882, 1055, 1290
Tru9I TTAA 6 cut(s) 384, 453, 851, 882, 1055, 1290
TscAI CASTG 1 cut(s) 982
TseFI GTSAC 2 cut(s) 307, 422
TseI GCWGC 2 cut(s) 766, 799
Tsp45I GTSAC 2 cut(s) 307, 422
TspDTI ATGAA 6 cut(s) 63, 86, 105, 519, 665, 733
TspRI CASTG 1 cut(s) 982
VpaK11BI GGWCC 1 cut(s) 14
VspI ATTAAT 1 cut(s) 851
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 5 cut(s) 5, 92, 217, 843, 980
XceI RCATGY 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 99
XmiI GTMKAC 2 cut(s) 175, 657
XmnI GAANNNNTTC 2 cut(s) 740, 1254
XspI CTAG 7 cut(s) 366, 803, 864, 1068, 1127, 1182, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.